Typing tool
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Typing tool
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Complete norovirus genomes
| PQ373119 | GII.17 | |
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| GII.P17 |
ORF1: 4..5112
ORF2: 5093..6709
ORF3: 6709..7488
LOCUS PQ373119 7550 bp RNA linear VRL 30-SEP-2024
DEFINITION Norovirus GII isolate RIVM-NL-NoV15-05 nonstructural polyprotein
(ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION PQ373119
VERSION PQ373119.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7550)
AUTHORS Vennema,H., Cremer,J., Jaarsma,R., van der Veer,B., Schmitz,D.,
Zwagemaker,F. and Kroneman,A.
TITLE Direct Submission
JOURNAL Submitted (25-SEP-2024) Centre for Infectious Disease Control,
National Institute for Public Health and the Environment, Antonie
Van Leeuwenhoeklaan, Bilthoven, Utrecht 3721 MA, Netherlands
COMMENT ##Assembly-Data-START##
Assembly Method :: Jovian v. 2.0.1
Sequencing Technology :: Sanger dideoxy sequencing; Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7550
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="RIVM-NL-NoV15-05"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Netherlands"
/collection_date="31-Jan-2015"
/note="genotype: GII.17"
gene 4..5112
/gene="ORF1"
CDS 4..5112
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="XHF05678.1"
/translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGAR
PKQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPKVVYKVGEGVSGLPNLTTVA
QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGYVLGVHKPPA
AISLAKIELTPLSLYWRVVYTPQYLIAPETLKNLSGETFPYTAFDNNCYAFCCWVLEL
NDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI
IGKLRPLNILNVLATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHVTILLKDKDSLATYMRTLDLEEEKARK
LSTKSASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAVNKYGLMDTLRVGNQLKSV
KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRSKVVVEKAQNATVQTNNELVGALH
HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDK
GGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTT
KLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHGDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 4..1002
/gene="ORF1"
/product="p48"
mat_peptide 1003..2100
/gene="ORF1"
/product="NTPase"
mat_peptide 2101..2637
/gene="ORF1"
/product="p22"
mat_peptide 2638..3036
/gene="ORF1"
/product="VPg"
mat_peptide 3037..3579
/gene="ORF1"
/product="Pro"
mat_peptide 3580..5109
/gene="ORF1"
/product="RdRp"
gene 5093..6709
/gene="ORF2"
CDS 5093..6709
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XHF05679.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDNDFQLQPTKFTPVGIND
DGDHPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6709..7488
/gene="ORF3"
CDS 6709..7488
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XHF05680.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAISQKIDFENNRQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSVYSMSTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKGVLDSWTPAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 tgaatgaaga tggcgtctaa cgacgcttcc gctgccgttg ctggcaaaaa caacaacaac
61 gacaaggaga aatcttcaag tgacagcttg ttttctaaca tgactgttac ttttaagaaa
121 gccctcgggg cgcggcctaa acaaccgccc ccgggagaaa caaaacaaat acaaaaacca
181 ccaagaccac cgacaccgga attggtgaag agaatacccc cacccccacc caatggcgag
241 gatgaaccaa aggtagtgta taaggtggga gagggtgtgt ctgggctgcc caacctaaca
301 actgtggcac agcctgacgc acaaaacaca gcttatagtg ttcccccact tagccagaga
361 gaagtcggcg aagctaaaga accgctgcct ggctccattc tggaaatgtg ggatggtgag
421 atctaccact acgggctgta tgttgagcgg gggtatgtac tcggagtgca caaaccacct
481 gctgcaataa gccttgccaa aattgaatta acaccgctgt ctctctactg gagagtggtc
541 tacactcccc agtatttgat agctccagaa actcttaaga atttgagtgg agagactttt
601 ccatatacgg cctttgacaa caattgttat gccttctgtt gttgggtcct agaacttaac
661 gactcctggc ttagcaggag aatgatccaa agaacaactg gattcttcag accgtatcag
721 gattggaaca gaaaaccctt accaaccatg gatgaaccga aaatcaagaa ggccgcgaat
781 gctgttctgt gtgctctctc ctcactcttt actagaccca ttaaggacat cattggaaag
841 cttagaccac tgaacattct taatgtactg gcaacttgtg actggacttt tgcaggcata
901 gtggaatcca tgatccttct tgctgaactc tttggggtgt tctggacccc cccagatgtg
961 tctgcgatga ttgctccctt actcggtgat tacgagatgc aaggccccga agacctggcc
1021 gtggaacttg tgcccgtggt aatgggagga ataggtttgg tgttaggatt caccaaggaa
1081 aagatcggca agatgctttc atcagctgcg accacactta gggcctgcaa ggatctagga
1141 tcttatggat tggagatact caaattggtc atgaagtggt tcttccccaa gaaggaggag
1201 gctaatgaac tagccatggt gagggccatt gaggatgcag tcctggattt ggaggcaata
1261 gaaaacaacc acgtgaccat ccttctcaag gataaagata gcctggccac atacatgagg
1321 actcttgact tggaagaaga gaaagcaagg aaactgtcaa ccaaatcggc gtcacctgac
1381 atcgtgggta caataaactc attattggca aggatagcag ccgccaggtc actggtccac
1441 aaggctaagg aggagctctc gagcaggcag agacctgttg ttgtaatgat atcaggtaga
1501 ccaggtatag gaaagaccca cctggccaga gagctagcca agaaagttgc gtcaacactg
1561 tcaggcgacc aaaggattgg actgataccc agaaatggcg tcgaccattg ggacgcctac
1621 aagggagaaa gggtggttct gtgggatgat tatggcatga gcaaccctat acaggacgca
1681 ctgaggctcc aagaattggc tgacacctgt cctctgaccc taaattgtga caggattgaa
1741 aacaaaggaa aagtgttcga cagtgatgcc ataattataa caaccaacct tgcaaaccca
1801 gcaccactag actatgtcaa ctttgaggcc tgctctagac gcatagactt cttggtgtac
1861 gcagacgcac ctgacatcga gaaggctaag cgtgacttcc ctggccaacc agatatgtgg
1921 aaagaccatt acagaccaga ctttacacac atcaaacttc agctggcacc acagggaggt
1981 tttgacaaaa atggcaacac cccacatggc aaaggtgtgg tgaagtctct gacgattggt
2041 tctctgatcg ccagggcttc tggcttgctc cacgagagaa tggatgaatt cgagctccag
2101 ggctctgacc taccaacctt caattttgac cgcaacaaag ttgccgcctt tagacaatta
2161 gcagctgtaa acaaatatgg tcttatggac acactgaggg tcggcaacca actgaaaagt
2221 gtcaagacac tggatgagct gaagcaggcc ataaagaaca tcagtatcaa gaagtgccag
2281 atagtgtata atggatgcac ctataccatg gaatctgatg ggaggagcaa ggttgtggtt
2341 gaaaaggcac aaaatgcaac agttcaaacc aacaatgaac ttgtaggggc actccaccac
2401 ctgagatctg caaggataag atactatgtt aaatgtttcc aagaagccat ttactctcta
2461 ctccaaattg ctggtgcagc cttcgtcacc tcacgcatcg tgaggcgcat gaacatctca
2521 aacctctggt cgaagccacc catcgaggag ggtgatgagc ctgaagacaa aggaggatgc
2581 cccaagccca gggatgaaga tgacctcact attgactcta gagacattaa agtggaaggg
2641 aagaagggta agaacaagtc tggccggggc aagaaacaca cagccttctc atccaagggc
2701 ctcagtgatg aagagtacga tgagtacaag aggatcagag aggagaggaa tggcaaatac
2761 tcaatagagg aatacctcca agatagggac agatactatg aagagcttgc cattgctaag
2821 gccactgagg aggacttctg tgaagaggag gaaatcaaaa tccgccaaag aatcttccga
2881 cccaccagga agcagcggaa agaggaaagg gccacgcttg ggcttgtcac aggatcggaa
2941 atcagaaaga ggaatccaga tgactttaaa ccaaaaggaa aattgtgggc tgatgacaac
3001 aggagcgtgg attacaatga gaggatagat tttgaggctc ctccgagtgt ttggtctagg
3061 atagtcaact ttggcacagg ctgggggttc tgggtttctc caagtctctt tataacttca
3121 acacacgtca taccaaaagg aatcactgag gcttttggag tgcccataaa ccagatccaa
3181 attcacaaat ctggagaatt ttgccgcttg cggtttccaa agccaatcag accagacgtg
3241 agtgggatga tcttggaaga gggtgcccct gaaggcactg ttgtgtctat tctcatcaaa
3301 aggacaacag gggagctgat gcctcttgca gtcagaatgg ggactcatgc cacaatgaaa
3361 atccaaggta gaacggtggg tggtcagatg ggtatgcttc tcactggctc aaatgctaaa
3421 agcatggatc taggcacaac gccaggtgac tgcgggtgtc catacatata caaaaggggc
3481 aatgacttcg tggccattgg ggtgcacact gcagcagcac gtggaggcaa cacggtcata
3541 tgtgccacac agggaagtga aggtgaagcc actcttgaag gaggtgacaa caagggcacc
3601 tattgtggag cccccatttt gggacctggc aatgcaccaa aattgagcac aaaaacaaaa
3661 ttctggagat cctctaacgc accgcttccc ccaggtactt atgaaccagc ataccttggt
3721 gggagagacc cgcgcgtgaa gggaggccca tccctgcaac aagttatgag agaccaacta
3781 aaacctttta cagagcctag agggaagcca ccaaacccaa acgtcctaga gtcagcaaag
3841 aagactatca tcaatgttct ggaacaaacc attgaccccc ctcaaaagtg gtcatatgcc
3901 caagcttgtg catccctcga caagacaact tccagtggat acccgcacca cgtccggaag
3961 aatgactatt ggagtggtga atccttcaca gggaaacttg cagaccaggc ttcaaaagca
4021 aatctcatgt atgaggaagg caagcacatg caaccagttt acaccgcagc actcaaagac
4081 gagctcgtga aaactgacaa aatttatggc aagatcaaga aaagactcct gtggggttct
4141 gacctctcca ccatgattcg atgcgccaga gcatttggtg gtctcatgga tgagctcaaa
4201 gcaaactgta ttacactccc tattagagtt ggtatgaaca tgaatgaaga cggtcccata
4261 atatttgaga aacactccag gtacaggtac cactatgatg ctgattactc ccgctgggac
4321 tccacacaac agcgggcagt gctggaagcg gcacttgaaa tcatggtgag attttctgct
4381 gagccgcagc tggcacaaat agtggcagag gacctgctgt caccaagtgt ggttgatgtg
4441 ggcgatttca aaatcgctat caacgaaggc ctaccatctg gcgtgccttg cacctcacaa
4501 tggaattcta ttgcccactg gttgctcacc ctgtgtgccc tttctgaagt gacaggacta
4561 ggtcctgaca tcatacaagc caactccatg tactctttct atggtgatga tgagattgtg
4621 agcacagaca taaaactgga cccagagaaa ttgactacaa agctcagaga atatggtctt
4681 aaacccactc ggcccgacaa aaccgagggg ccgctggtga ttagtgaaga cctgaatggg
4741 ttgactttcc tccgccgaac agtcacccgt gatccagcag gttggtttgg aaagttggac
4801 caaaactcca ttctcaggca gttgtactgg acaagaggac ccaaccatgg agaccccagt
4861 gagaccatga taccacacgc acagagacct gtgcagctca tggcactact aggagaatcc
4921 tccctacatg gaccctcatt ttacagcaag gttagcaaac tggtcatatc tgaacttaaa
4981 gagggaggaa tggattttta tgtgcccaga caagagtcaa tgttcagatg gatgaggttc
5041 tcagatctaa gcacatggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat
5101 ggcgtcgaat gacgccgctc catctaatga tggtgctgct ggtctcgtac cagagggcaa
5161 caacgagacc cttcccctag aaccagttgc gggcgcagct atagccgcac ccgtcactgg
5221 ccaaaacaac ataattgacc cctggattag aacaaatttt gtacaagcac caaatggaga
5281 gttcacagtg tcacccagaa actcccctgg agaaatttta ctaaacctag agttgggccc
5341 tgatttgaac ccttatttgg ctcatttgtc aaggatgtac aatgggtatg ctggtggggt
5401 ggaagttcag gttctcctgg cagggaacgc gttcactgcc ggaaagatcc tcttcgccgc
5461 cgtcccgcca aatttcccag tggaattctt aagcccagcc cagattacaa tgctcccaca
5521 tttaatagta gatgtcagga ctcttgaacc aattatgatc ccactccctg atgttaggaa
5581 tacattcttc cattataaca accagcctaa cagccgcatg agattagtgg ctatgctcta
5641 tacccccctt agatctaatg gctcaggtga tgatgtcttt actgtttctt gcagggtttt
5701 gactaggccc actcctgatt ttgagtttac ttatttagtg ccaccttctg ttgaatctaa
5761 gactaagcct ttttccttac ccattttaac cctttctgag ctcacaaatt cgaggttccc
5821 agtccccatc gattcgcttt tcaccgccca gaataatgtg ttgcaggtgc agtgtcaaaa
5881 tggcaggtgc acacttgatg gagagttaca aggcacaacc cagttgctcc catctggcat
5941 ctgtgcattc agaggacggg tgacagcaga aactgaccat cgtgacaagt ggcacatgca
6001 actgcaaaac ctcaatggca caacatatga cccaactgat gatgtgccag ccccactggg
6061 tacacctgac ttcaagggcg tcgtgtttgg ggtagcaagt caaagaaatg tgggtaatga
6121 tgcgcctggc tcgaccaggg cccatgaggc ggtgatttca acctatagcc cccagtttgt
6181 ccccaaatta ggttctgtca attttagaag taatgataat gacttccaat tgcagcctac
6241 aaaattcaca ccagtgggca tcaatgacga tggtgaccac ccgttcagac aatgggaact
6301 accagactat tcaggggtgc ttaccttgaa tatgaacctt gcccccccgg ttgctccaaa
6361 tttccctggt gaacaattat tattcttcag atcttttgtg ccatgctcag gaggttataa
6421 ccaaggcatt gtagattgtc ttattcccca ggaatggatc caacacttct atcaggaatc
6481 agcgccctcc caatcagacg tggccctgat caggtatgtt aaccccgaca cggggcgcac
6541 actgtttgaa gcaaaattgc acagatctgg ttacattact gtggctcact ctggagacta
6601 tcctcttgtt gttccggcta atggatactt tagatttgat tcttgggtaa atcagtttta
6661 ctcactcgcc ccaatgggaa ctgggaatgg gcgaaggagg gctcagtaat ggctggagct
6721 ttcattgcag gattggcagg cgacatgctc acgtcatctg tgggctccct ggtgaatgca
6781 ggggcaaacg ccatcagcca aaagatagac tttgaaaaca acagacaact ccagtctgct
6841 tcctttcagc atgataaaga gatgctccaa gcgcaggtga aggcaaccaa gcagctgcaa
6901 tctgaaatga tagccctaaa acagggagtt ttggccgcag gcggcttttc ccccactgat
6961 gcagcaaggg gagccattgg tgcgcccatg acaaaggtgc ttgactggtc tggcactcga
7021 tactgggcac ccaattccac aaagacaact ggttattcgg gacaattcac ctcttcacct
7081 gtgcacatgc ctagcccaaa tgctccacaa tcaaaacctg caaagcctag gtctctagct
7141 ccttcctctt cttctagtag tgtctatagt atgtctactc aatcaactca tttaacatct
7201 ggctcttcta gtaatgcttc ctctgcctct acaaaattga caaacttaag ctctggctcc
7261 tctcaaaaca ggacggcaga gtgggtgaac caacagagaa gtcttagccc tttcatgagt
7321 ggcgcactca atatctcaca tgtcacgcca ccctcaagta gggcttccag ttctgggacg
7381 gtctcgaccg tgcccaaggg agttttggac tcctggacgc ctgcgtttaa tacgcacaga
7441 cagccgctct tcgcacacct cagagtgagg ggggagtcac gtgtttagtg aaaagaaata
7501 attggctata atgtgatttc tttttaaaat ttggctaatt tgtatctttt
//