Typing tool
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Typing tool
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Complete norovirus genomes
| PQ273191 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 3..5102
ORF2: 5083..6705
ORF3: 6705..7511
LOCUS PQ273191 7610 bp RNA linear VRL 02-JAN-2025
DEFINITION Norovirus GII isolate BMH-22-153 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION PQ273191
VERSION PQ273191.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7610)
AUTHORS Harlow,J., McLeod,M., Flint,A., Blondin-Brosseau,M., Weedmark,K.
and Nasheri,N.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2024) Bureau of Microbial Hazards, Health Canada,
251 SIR FREDERICK BANTING, Ottawa, ON K1Y 0M1, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: Megahit v. 1.2.9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7610
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BMH-22-153"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Canada: Regina, Saskatchewan"
/collection_date="2022"
/note="genotype: GII.4 Sydney_2016"
gene 3..5102
/gene="ORF1"
CDS 3..5102
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="XFE80673.1"
/translation="MKMASNDASAAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KKSAPRDEPQEPPRPPIPELVKRIPPPPPNGEEEREPVIRYEVKSGISGLPELTTVPQ
PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA
ISLARVELAPLSLYWRVVYTPQYLISPDTLRRLNGEAFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMVQRTTGFFRPYQEWNRKPLPTVDDSKIKKVANIFLCSLSTLFTRPIKDLI
GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGVGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDMEEEKARKL
STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAR
EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV
EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK
TMEELKQAIRNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH
LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE
ALKTEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRRRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPASITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGNEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPYHVRKNEFW
NGETFTGKLADQASKANLMYEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSETTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTTKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide 3..998
/gene="ORF1"
/product="p48"
mat_peptide 999..2096
/gene="ORF1"
/product="NTPase"
mat_peptide 2097..2627
/gene="ORF1"
/product="p22"
mat_peptide 2628..3026
/gene="ORF1"
/product="VPg"
mat_peptide 3027..3569
/gene="ORF1"
/product="Pro"
mat_peptide 3570..5099
/gene="ORF1"
/product="RdRp"
gene 5083..6705
/gene="ORF2"
CDS 5083..6705
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XFE80674.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQLNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDITHTTGSRNYTMNLASQNWNNYDPTEDIPAPLGTPDFVGKIQGML
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAV"
gene 6705..7511
/gene="ORF3"
CDS 6705..7511
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XFE80675.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGALPGRANLRDTVPARGPSTKPS
NSSIATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 gaatgaagat ggcgtctaac gacgcttccg ctgccgttgc ttgcaacaac aacaacgaca
61 aggaaaaatc ttcaggtgaa ggcttattca caaatatgtc ttccacctta aagaaagccc
121 tcggggctag gcccaaaaag tctgccccga gagacgagcc acaagaaccc ccaaggccac
181 caattcccga gttggtcaag aggatacccc ctcctccacc taatggcgaa gaagaaagag
241 aacctgtcat taggtatgag gttaagagtg ggatctctgg cctgcccgag ctcacaacag
301 tccctcaacc ggacgtggcc aacacagcat ttagtgttcc accactgagt ttgagagaaa
361 acagggaggc caaggaaccg ctgacagggg caatactaga gatgtgggac ggagagatat
421 accactatgg cctgtatgtg gagaaaggct tagtgttggg cgtgcacaaa cctcctgcag
481 ccataagctt agcaagagtg gagctggcgc cgctgtcatt gtactggcgt gtggtgtaca
541 ctccccaata cctcatctcc cctgatactc tcaggaggct caacggagaa gcgttccctt
601 acaccgcctt cgacaacaac tgctatgcct tttgctgctg ggtgttggac ctcaatgatt
661 catggcttag cagaaggatg gtgcaaagaa caacgggctt cttcagacct tatcaagagt
721 ggaacagaaa acccttgcct accgtggatg actctaaaat aaagaaggta gcaaatatat
781 tcctatgctc attgtccaca ttgttcacca gacccataaa agaccttata ggaaaaatta
841 aaccattaaa catattgaac atcctggcaa cgtgtgactg gacgtttgcc ggaatagtgg
901 agtctctgat attgcttgcc gaactcttcg gagttttctg gacaccccca gatgtgtctg
961 ctatgatcgc tcccttactc ggggactacg agttgcaagg gccagaagat cttgccgttg
1021 agctcgtacc tgtggtaatg ggaggggttg gtttggtgtt gggattcacc aaagagaaaa
1081 ttggcaaaat gttgtcctca gcagcatcaa cactcagggc ttgtaaagac cttggtgcct
1141 atggcttaga gatactcaaa ttggtcatga agtggttctt cccaaagaaa gaggaggcca
1201 atgagctagc catggtgaga gccatagagg acgccgtgct ggacctggag gcaatagaaa
1261 acaaccacat gacagccctg ttgaaagaca aagacagcct ggcaacatac atgaaaacat
1321 tggacatgga ggaggagaaa gccagaaagt tgtccacgaa atctgcatcc cctgacatag
1381 ttgggacaat caacgccctg ctggctcgaa tagcagcggc caggtcatta gtccacaggg
1441 ccaaggaaga gctgtctagc aggataagac cagtagttgt tatgatatct ggcaaaccag
1501 gaataggaaa aactcacctg gctagggagg tggcaagaaa ggtggcatcc actctcacag
1561 gggatcaaag agtcggactc ataccaagaa acggtgtgga ccattgggat gcatacaaag
1621 gtgagagagt cgtgctgtgg gacgactatg gcatgagcaa ccccattcat gatgcccttc
1681 gcatacaaga actggctgat acgtgccccc ttaccttaaa ttgtgacaga attgaaaata
1741 agggaaaagt ttttgacagt gaagtcataa taatcacaac aaaccttgcc aacccagccc
1801 cacttgatta tgtcaacttt gaggcctgtt ccaggagaat tgatttcctg gtgtacgctg
1861 aggcaccaga agtagaaaag gcaaaacggg attttcctgg tcagccagat atgtggaagg
1921 acgccttcaa gccggacttt tcacacatca agctacagct tgcacctcag ggcggcttcg
1981 acaagaatgg taacacccca catgggaagg gagtgatgaa gaccctcact accggttctc
2041 tgattgcccg tgcatcaggc ctactgcatg agaggatgga tgaattcgaa ctccaaggcc
2101 ccacaatcac cactttcaat ttcgaccgga acagaatcac agcattcaga caattggctg
2161 cagaaaataa gtatggattg gtggacacca tgaaagttgg caatcaacta aaaggagtga
2221 aaaccatgga agaacttaag caagcaatca ggaatgtgat cattaagagg tgccggatca
2281 tctacggcgg ctccacgtat gatcttgaat ctgatggcaa gggcaaggtt ttagtggaaa
2341 aggtcaagaa cacctctgta cagaccaaca acgagttggc cggggccctg caccatctta
2401 aacacgcccg gatcaggtat tatgtcaaat gtgtgcaaga agcagtctac tccatcatac
2461 aaatcgccgg cgctgcgttt gttaccacgc gcattgcacg ccgcatgaac atacaagaac
2521 tctggtcgaa gccacaattg gatcaaaatg aatcagagac taaggaagag gccctcaaga
2581 cagaagatga cgagttcatc atatcttcta aggacatcaa ggaggaagga aagaagggca
2641 aaaacaaaac tggccgtggc aagaaacaca ctgcattctc cagcaagggc ttgagcgatg
2701 aagagtatga cgagtacaag aggataagag aagagagaaa tgggaagtac tctatagagg
2761 aatatcttca agacagagac aggtactatg aggagctcgc cattgccaag gctacggaag
2821 aagacttctg tgaagaggag gaaatcaaaa tccgtcaaag aattttccgt cccaccagga
2881 aacaaagaaa ggaagagagg gccacattag ggctggtaac aggttcagaa atcaggagaa
2941 gaaaccctga tgatttcaaa cccaaaggga agctgtgggc cgatgacaac agaagtgttg
3001 actacaacga gaaactggac tttgaggccc ccccaagcat atggtctagg attgtgagct
3061 ttggttctgg ctggggcttc tgggtatcac caagcctgtt cataacatca actcatgtaa
3121 tccccgcaag tataacagaa gcatttggag tccctatcaa acaaattcag atccacaaat
3181 caggtgaatt ttgccgattc agattcccaa aaccaattag accagatgtg acaggaatga
3241 tcttggaaga aggagcgcct gaaggcaccg tggcaactgt gctcatcaaa cgccccaccg
3301 gagagctcat gcctcttgca gccagaatgg gaacacacgc aaccatgaag attcaaggcc
3361 gcatggttgg cggacagatg ggtatgttgc tcactgggtc aaatgctaaa ggaatggact
3421 tgggaacaac tcctggtgac tgtggctgcc cttacatcta taaaaggggc aatgactata
3481 tagtcattgg ggtgcacact gcagcggccc gtggtggaaa caccgtcatc tgtgccacac
3541 agggaaatga gggtgaggca actcttgagg gtggagatga caaaggaaca tactgtgggg
3601 cacccattct aggtcctggg ggtgcaccaa aattgagcac taaaaccaaa ttttggaggt
3661 catcgaacac gccccttcca ccagggacat atgagcccgc ctacctcggt ggccgtgatc
3721 cgcgtgttaa gggtgggccc tccttgcagc aggtaatgag agaccagttg aagccattta
3781 ctgaacccag gggcaaacct ccaagaccaa gtgttttgga agcagccaaa caaaccatta
3841 tcaatgtcct cgaacagacc ctggatcctc cacaaaaatg gacatacgca caggcgtgtg
3901 cctcacttga caaaaccacc tccagcgggc acccctacca cgtccgaaag aatgaattct
3961 ggaatggtga gaccttcact ggtaaattgg cagaccaagc atcaaaagca aacctaatgt
4021 atgaggaagg gaaacacatg acaccagtgt acacagcagc actcaaggac gagctagtca
4081 agactgagaa aatctatgga aagatcaaga agagactgct ctggggctct gacttgtcca
4141 ccatgatccg gtgcgctagg tcatttggtg ggctcatgga cgagatgaaa gcacactgca
4201 tatcactccc agtgcgagtc ggcatgaata tgaatgaaga tggcccaata atatttgaga
4261 aacattccag atacaaatat cactatgatg cagactactc tcgttgggat tcaacacaac
4321 agagggcagt actagcagca gccttggaaa tcatggtcag gttctctgca gaaccacaat
4381 tggcacaaat agtcgctgag gatctactgg cccctagtgt ggtagatgta ggagacttta
4441 agatcacaat aaatgagggg ctcccatctg gcgtgccatg cacttctcaa tggaactcca
4501 tcgcacactg gctgctaact ctctgtgcct tgtctgaaac caccaaacta tcccctgaca
4561 ttatacaagc aaactccatg ttctcatttt acggtgatga cgagattgtc agcaccgaca
4621 taaaattgga ccctgaacag ttgaccacca agttgaagga gtacggtctg aagccaaccc
4681 gcccagacaa gaccgaggga cccctgatca tcagtgaaga tttgaacgga ctcactttcc
4741 tccgaaggac ggtgactcgt gacccagctg gctggtttgg aaaactggac caaagttcaa
4801 ttttgaggca gatgtactgg actagaggac caaatcatga agaccctagt gagacaatga
4861 taccccattc tcagagaccc atacagctca tggcactgct tggtgaagcc tctcttcacg
4921 gaccctcttt ctacagtaga atcagtaaat tggttataac tgagcttaaa gaaggtggaa
4981 tggattttta cgtgccaagg caggaaccaa tgttcaggtg gatgaggttt tccgacttga
5041 gcacgtggga gggcgatcgc aatctggctc ccaattttgt gaatgaagat ggcgtcgagt
5101 gacgccaacc catctgatgg gtccgcagcc aacctcgtac cagaggtcaa caatgaggtt
5161 atggctttgg agcccgttgt tggtgccgct attgcggcac ctgtagcagg ccaacaaaat
5221 gtaattgacc cctggattag aaataatttt gtacaagccc ctggtgggga gtttacagta
5281 tcccctagaa atgctccagg tgaaatacta tggagcgcgc ccctaggccc tgacctaaat
5341 ccctacctat cccatttggc cagaatgtac aatggttatg caggtggttt tgaagtgcag
5401 gtaattctcg cggggaatgc gttcaccgcc gggaagatca tatttgcagc agtcccacca
5461 aactttccaa ctgaaggctt aagtcctagc caggttacta tgttccccca tataatagta
5521 gatgttagac aattagaacc tgtgctgatt cccttacccg atgttaggaa taatttctat
5581 cattataatc agttaaatga ttccactatt aagttgatag caatgttgta cacaccactt
5641 agggctaata atgctgggga tgatgttttc acagtttcgt gccgagttct cacgagacca
5701 tctcccgatt ttgattttat atttttagtg ccacccacag ttgagtcaag aactaaacca
5761 ttttctgtcc cagttttaac tgttgaggag atgaccaatt caagattccc catccctttg
5821 gaaaagctgt tcacaggccc cagcagtgca tttgttgttc aaccacaaaa cggcagatgc
5881 acaactgatg gtgtgctcct aggtaccacc caactttctc ctgtcaacat ctgtaccttc
5941 agaggggata tcacccacac cacaggtagt cgcaactaca caatgaattt ggcttctcaa
6001 aattggaaca actatgaccc aacagaagac atcccagccc ctctaggaac tccagatttt
6061 gtggggaaga tccaaggcat gcttacccag actacaaggg cagatggttc aacacgcggc
6121 cacaaagcta cagtgtacac tgggagtgcc gactttgcac caaaactggg tagagttcaa
6181 tttgaaactg acacagacca tgattttgaa gctaatcaaa acacaaagtt caccccagtc
6241 ggtgtcatcc aagatggtag caccacccac cgaaacgaac cccaacagtg ggtgctccca
6301 agttactcag gcagaaacac tcacaatgta catttggccc ccgctgtggc ccccaccttt
6361 ccaggtgagc agcttctctt cttcagatcc accatgcccg gatgcagcgg gtaccccaac
6421 atggacttgg actgcctact cccccaggaa tgggtgcaat acttctacca agaggcagcc
6481 ccagcacaat ctgatgtggc tctgctaaga tttgtgaatc cagacacagg tagggttttg
6541 tttgagtgca agcttcacaa atcaggctat gttacagtgg cccacactgg ccaacatgat
6601 ttagttatcc cccccaatgg ttactttagg tttgattcct gggtcaacca gttctacacg
6661 cttgccccca tgggaaatgg agcggggcgt agacgtgcag tataatggct ggggctttct
6721 ttgctggatt ggcatctgat gtccttggct ctggacttgg ttcccttatc aatgctgggg
6781 ctggggccat caaccaaaaa gttgagtttg aaaataatag aaaattgcaa caagcatcct
6841 ttcaatttag cagcaatttg caacaggctt cctttcaaca tgataaagaa atgctccaag
6901 cacagattga ggccaccaaa aagctacaac aggaaatgat gaaagttaag caggcaatgc
6961 tcctagaggg tggattctct gagacagatg cagcccgcgg ggcaatcaac gcccccatga
7021 caaaagcttt ggactggagc ggaacaaggt actgggctcc agatgccaga atcacaacat
7081 acaatgcagg ccacttttcc acccctcaac catcgggggc attgccagga agagctaatc
7141 ttagggatac tgttcctgct cgggggccct ccaccaaacc ttctaactct tctattgcta
7201 cttctgtgta ttcaaatcaa actgtttcaa cgagacttgg ttctacagct ggttctggaa
7261 ccagtgtctc gagcctcccg tcaactgcaa ggactaggag ctgggttgag gatcaaaata
7321 ggaatttgtc acctttcatg aggggggccc acaacatatc atttgtcacc ccaccatcta
7381 gcagatcctc cagccaaggc acagtctcaa ccgtgcctaa agaaattttg gactcctgga
7441 ctggcgcttt caacacgcgc aggcagcctc tcttcgctca cattcgtaag cgaggggagt
7501 cacgggcgta atgtgaaaag acaaaactga ttatttctct tttacttttc tttaatgtct
7561 tttaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//