Typing tool
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Typing tool
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Complete norovirus genomes
| PQ195941 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..905
ORF2: 886..2508
ORF3: 2508..3314
LOCUS PQ195941 3329 bp RNA linear VRL 01-JAN-2025
DEFINITION Norovirus GII isolate Hu/GII.4 Sydney[P31]/Sandusky0376/2014/USA
nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds;
and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION PQ195941
VERSION PQ195941.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3329)
AUTHORS Barclay,L., Montmayeur,A.M., Cannon,J.L., Mallory,M.L., Reyes,Y.I.,
Lindesmith,L., Wall,H., Baric,R.S., Vinje,J. and Chhabra,P.
TITLE Norovirus GII.4 evolution in the United States since emergence of
GII.4 Sydney
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3329)
AUTHORS Brandt,E., Barclay,L., Montmayeur,A.M., Vinje,J. and Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2024) Viral Gastroenteritis Branch, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. v. 11.1.2; SPAdes v. v. 3.6
Sequencing Technology :: Sanger dideoxy sequencing; Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3329
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.4 Sydney[P31]/Sandusky0376/2014/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA"
/collection_date="14-Jul-2014"
/note="genotype: GII.4 Sydney[P31]"
gene <1..905
/gene="ORF1"
CDS <1..905
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XEJ39135.1"
/translation="VTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDV
LAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIA
HWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPT
RPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFE
TMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMR
FSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..902
/gene="ORF1"
/product="RdRp"
gene 886..2508
/gene="ORF2"
CDS 886..2508
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XEJ39136.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 2508..3314
/gene="ORF3"
CDS 2508..3314
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XEJ39137.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLIDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gtgtcacact tcctgtcaga gttggtatga acatgaatga ggatggcccc atcatctttg
61 agaagcactc cagatataga taccactatg atgctgatta ttcccggtgg gactcaacac
121 aacaaaggga tgtgctagca gcagcactag aaatcatggt taagttctct ccagaaccac
181 acctggccca gatagttgca gaagacctcc tttcccctag cgtgatggat gtaggtgact
241 ttcaaatatc aataagtgag ggtctcccct ctggggtacc ttgtacctcc cagtggaatt
301 ccatcgccca ctggctcctc actctgtgcg cactctctga agtcacggac ctgtcccctg
361 atatcattca ggccaactcc cttttctcct tctatggtga tgatgagatt gtaagcacag
421 acataaagtt ggacccagag aagctgacag caaaactcaa ggagtacggg ctgaagccaa
481 cccgccccga caaaactgaa ggaccccttg ttatctctga agacctggat ggcctgacat
541 tcctccggag aactgtgacc cgtgatccag ctggctggtt tggaaaattg gaacaaagct
601 caattctcag gcaaatgtac tggaccaggg gtcccaacca tgaagatcca tttgaaacaa
661 tgataccaca ctcccaaaga cccatacaat tgatgtcctt gctgggcgag gctgcactcc
721 acggcccggc attctatagc aaaattagca aattggtcat tgcagagttg aaggaaggtg
781 gcatggactt ttacgtaccc agacaagagc caatgttcag atggatgaga ttctcagatc
841 tgagcacgtg ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg
901 agtgacgcca acccatctga tgggtccgca gccaacctcg tcccagaggt caacaatgag
961 gttatggctc tggagcccgt tgttggtgcc gccattgcgg cacctgtagc gggccaacaa
1021 aatgtaattg acccctggat tagaaataat tttgtacaag cccctggtgg agagtttaca
1081 gtatccccta gaaacgctcc aggtgaaata ctatggagcg cgcccttggg ccctgatcta
1141 aatccctacc tatcccattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg
1201 caggtaattc tcgcggggaa cgcgttcacc gccgggaagg tcatatttgc agcagtccca
1261 ccaaattttc caactgaagg cttgagcccc agccaggtca ctatgttccc ccatatagta
1321 gtagatgtta ggcaactaga acctgtgttg attcccttac ccgatgttag gaataatttc
1381 tatcattaca atcaatcaaa tgaccccacc attaagttga tagcaatgtt gtatacacca
1441 cttagggcta ataatgctgg ggatgatgtc ttcacagttt cttgccgagt tctcacgaga
1501 ccatcccccg attttgattt catatttcta gtgccaccca cagttgagtc aagaactaaa
1561 ccattctctg tcccagtttt aactgttgag gagatgacca attcaagatt ccccattcct
1621 ttggaaaagt tgttcacggg tcccagcagt gcctttgttg tccaaccaca aaacggtagg
1681 tgcacgactg atggcgtgct cctaggcacc acccaactgt ctccagtcaa catctgcacc
1741 ttcagaggag atgtcaccca tatcacaggt agtcgtaact acacaatgaa tttggcttct
1801 caaaattgga gcaattatga cccaacagaa gaaatcccag cccctctagg aactccagat
1861 tttgtgggga agattcaagg cgtgctcacc caaaccacaa ggacagatgg ctcaacacgc
1921 ggccataaag ccacagtgta cactgggagc gccgactttg ctccaaaact gggtagagtt
1981 caatttgaaa ctgacacaga ccatgatttt gaagctaacc aaaacacaaa gttcacccca
2041 gttggtgtca tccaagatgg tagcaccacc caccgaaatg aaccccaaca gtgggtgctc
2101 ccaagttact caggcagaaa tactcctaat gtgcatctgg cccccgctgt agcccccact
2161 tttccgggtg agcaacttct cttcttcaga tccaccatgc ccggatgcag cgggtacccc
2221 aacatggatt tggactgtct gctcccccag gaatgggtgc agtactttta ccaagaggca
2281 gccccagcac aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt
2341 ttgtttgagt gtaagcttca taaatcaggc tatgttacag tggctcacac tggccaacat
2401 gatctggtta tcccccccaa tggttatttt aggtttgatt cctgggtcaa ccagttttac
2461 acgcttgccc ccatgggaaa tggaacgggg cgtagacgtg cactataatg gctggagctt
2521 tctttgctgg attggcatct gatgtccttg gctctggact tggttccctt atcaatgctg
2581 gggctggggc catcaaccaa aaagttgagt ttgaaaataa cagaaaattg caacaagcat
2641 ccttccaatt tagcagcaat ctacaacagg cttcctttca acatgacaaa gagatgctcc
2701 aagcacaaat tgaggccacc aaaaggctac aacaggaaat gatgaaagtt aagcaggcaa
2761 tgctcctaga gggtgggttc tctgagacag atgcggcccg cggggcaatc aacgccccca
2821 tgacaaaagc tttggactgg agcgggacaa ggtactgggc tcccgatgct aggactacaa
2881 catacaatgc aggccgcttt tccacccctc aaccatcggg ggcactgcca ggaagagcta
2941 atcttataga tgctgtccct gctcggggtt cctccagtaa gtcttctaat tcttccactg
3001 ctacttctgt gtactcaaat caaaccactt caacgagact tggttctaca gctggttctg
3061 gtaccagtgt ctcgagcctc ccgtcaactg caaggactag gagctgggtt gaggatcaaa
3121 gtaggaattt gtcacctttc atgagggggg cccacaacat atcgtttgtc accccaccat
3181 ctagcagatc ctctagccaa ggcacagtct caaccgtgcc taaagagatt ttggactcct
3241 ggactggcgc tttcaacacg cgcaggcagc cactcttcgc tcacattcgt aagcgagggg
3301 agtcacgggt gtaatgtgaa aagacaaaa
//