Typing tool
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Typing tool
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Complete norovirus genomes
| PQ100944 | GII.7 | |
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| GII.P7 |
ORF1: 1..530
ORF2: 511..2133
ORF3: 2133..2906
LOCUS PQ100944 2979 bp RNA linear VRL 03-AUG-2024
DEFINITION Norovirus GII isolate GII/Hu/RU/2024/GII.7[P7]/Nizhny_Novgorod113
nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds;
and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION PQ100944
VERSION PQ100944.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 2979)
AUTHORS Epifanova,N.V., Oparina,S.V., Sashina,T.A., Alekseeva,A.E.,
Morozova,O.V., Kashnikov,A.Y. and Novikova,N.A.
TITLE The predominance of a previously rare genotype GII.7[P7] in Russia
in 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2979)
AUTHORS Epifanova,N.V., Oparina,S.V., Sashina,T.A., Alekseeva,A.E.,
Morozova,O.V., Kashnikov,A.Y. and Novikova,N.A.
TITLE Direct Submission
JOURNAL Submitted (28-JUL-2024) Laboratory of Molecular Epidemiology of
Viral Infections, I.N. Blokhina Nizhny Novgorod Research Institute
of Epidemiology and Microbiology, Malaya Yamskaya, 71, Nizhny
Novgorod 603950, Russia
COMMENT ##Assembly-Data-START##
Assembly Method :: Unipro UGENE v. 42.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2979
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII/Hu/RU/2024/GII.7[P7]/Nizhny_Novgorod113"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Russia: Nizhny Novgorod"
/collection_date="10-Feb-2024"
/note="genotype: GII.7[P7]"
gene <1..530
/gene="ORF1"
CDS <1..530
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XDI41431.1"
/translation="ACFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPL
VITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRA
TQLMALLGEASLHGPQFYKRVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEG
DRNLAPEGVNEDGVE"
mat_peptide <1..527
/gene="ORF1"
/product="RdRp"
gene 511..2133
/gene="ORF2"
CDS 511..2133
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XDI41432.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
gene 2133..2906
/gene="ORF3"
CDS 2133..2906
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XDI41433.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVSAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPMQSASYVNNQNRQLFKVDPSPSSSSGSSVSSVKTQ
STALSGTSRVDSSSQSTLSIRPSSRTSVWVRSQNERLSPFMNGALQTAYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 acgcctgttt ttcgttttac ggggacgatg agatcgtcag tactgacatc aatctcgacc
61 ctatgaagtt gacacagaaa ctcagggagt atggtctggt ccccacccgg cctgataaaa
121 ccgaaggccc cctcgtcata actgaagacc tcaccggcct gacattcctc cgtaggtcga
181 tcgctcggga cccagctggt tggtttggga aactggacca agactcaatt ctcagacagc
241 tatactggac aagggggcct aaccatgaga acccgtacga gagtatggtt cctcattctc
301 agcgggctac acagctcatg gcccttcttg gtgaggcctc gctgcatggt ccacagtttt
361 acaagagagt tagcaagatg gtcatcaatg agattaaaag tggtggtctg gagttttatg
421 tgcccagaca agaggccatg ttcaggtgga tgagattctc tgacctcagc acatgggagg
481 gcgatcgcaa tcttgctccc gaaggtgtga atgaagatgg cgtcgaatga cgcagctcca
541 tctaatgatg gtgcagcagg cctcgtgcca gagatcaaca atgaggtcat gccccttgag
601 cccgtggctg gtgcatcgct ggcgacacca gttgtcgggc aacaaaacat aattgatccc
661 tggataagaa ataattttgt acaagctcct gcaggtgagt tcacagtttc tcctagaaat
721 tcccctggtg aaattttgct tgatttggag ttgggaccag agttgaaccc ctatcttgct
781 catcttgccc gtatgtacaa tgggcacgct ggtggcatgg aagtgcaaat tgtgttggct
841 gggaacgcgt tcacagctgg caagatcata tttgctgcca tccctccagg gttcccatat
901 gaaaatttat caccttcaca aattacaatg tgcccccatg ttataattga tgttagacaa
961 ttagagccag tcttattacc tatgccagat atcagaaata atttcttcca ttataatcag
1021 ggtaatgatc caaaattaag actggtagct atgctctaca ctcctttaag ggctaataat
1081 tctggtgatg atgtgttcac agtttcttgt agggttctca ctaaaccatc acctgatttt
1141 gaattcacat ttttggtccc ccctacagtt gaatccaaga ccaagcagtt cacattgccc
1201 atccttaaaa tatcagagat gaccaactca agattcccag tgccggtgga aatgatgtac
1261 acagcaagga atgagaatca agttgtccag ccacagaatg gtagggtcac actcgatggc
1321 gagctattgg gcaccacgcc cttgttggct gtcaacatct gcaaattcaa gggagaggtc
1381 atagctaaga atggagatgt gagatcctat aggatggaca tggaaatcac caacactgat
1441 ggcaccccaa ttgaccccac tgaagataca cctggtccca ttggatcacc tgactttcaa
1501 ggtatactct ttggcgttgc cagtcagcgc aacaaaaatg agcagaatcc tgctaccaga
1561 gcccatgaag ccaacatcaa tactggtggg gaccaatatg cccccaaatt ggcccaagtg
1621 aaattctttt cagagtccca ggatttcgag gtgcaccaac ccacagtttt caccccagtt
1681 ggtgtggcag gtgatacttc ccaccctttc agacagtggg tcttgcctcg atatggtgga
1741 catctcacca acaacactca cttggctcca gcagtggccc ccctattccc aggtgagcag
1801 attctgttct ttagatcaca aatacctagt tcaggcggcc atgaattggg ttacatggac
1861 tgccttgtcc cacaggaatg ggtccaacac ttctaccaag aagctgccac agctcagtct
1921 gaggtggcac tcataaggtt cattaaccct gacactggca gagtcctctt tgaggccaag
1981 ctacacaagc aaggctttat aactgtggct cacaccggtg acaacccaat tgtcatgcca
2041 ccaaatgggt acttcagatt tgaagcctgg gtcaatcagt tttactcact cgcccccgtg
2101 ggaactggga atgggcgtag gaggatccaa taatggccag tgctttcttt gcaaatttgg
2161 cagggggcgt tgcctccaat ggaatcagtt cacttataaa tgctggggct aatgctatta
2221 accaaaaggt tgagtttgat tataataaac aactccaaaa tgcatccttc tcccacgata
2281 aagaaatgct ccaagcccaa attgaagcca ctaaacgttt gcaacaagag atgattgaca
2341 taaaacaagg ggtgctgacg gctgcgggat tctctcccac ggatgccgcg aggggttctg
2401 ttagcgcgcc aatgacaaaa ttagttgatt ggagtggtac cagatattgg gctcctggtg
2461 ccatgaggac aacaggatat tcaggaactt ttactcactt gcctcctatg cagtctgctt
2521 catatgttaa taatcagaat agacagcttt ttaaagtaga tccttctcct tcttcctcaa
2581 gtggctcttc agtttcttct gttaaaacac aatcaactgc tctctccggc acttcaaggg
2641 tggactcttc atctcagtca accctgtcga tcaggccgag ctcaaggaca tctgtctggg
2701 tacgtagcca aaatgaaagg ttgagcccct tcatgaatgg agcgttgcaa acagcgtatg
2761 taacgccacc atctagtagg gcatcaagtg tcagcacagt ctcgaccgtg ccgaaagagg
2821 ttttggactc ctggacgcct atgtttaaca ctcacaggca gccgctcttc gcccacttgc
2881 gtaggcgagg ggagtcacag atttagtgaa aagatcaatt aggaaagttt gattagtttt
2941 cttttctatt attcctttaa tttttctttt aaaaaaaaa
//