Typing tool
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Typing tool
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Complete norovirus genomes
| PQ100943 | GII.7 | |
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| GII.P7 |
ORF1: 1..460
ORF2: 441..2063
ORF3: 2063..2836
LOCUS PQ100943 2909 bp RNA linear VRL 03-AUG-2024
DEFINITION Norovirus GII isolate GII/Hu/RU/2024/GII.7[P7]/Nizhny_Novgorod20
nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds;
and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION PQ100943
VERSION PQ100943.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 2909)
AUTHORS Epifanova,N.V., Oparina,S.V., Sashina,T.A., Alekseeva,A.E.,
Morozova,O.V., Kashnikov,A.Y. and Novikova,N.A.
TITLE The predominance of a previously rare genotype GII.7[P7] in Russia
in 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2909)
AUTHORS Epifanova,N.V., Oparina,S.V., Sashina,T.A., Alekseeva,A.E.,
Morozova,O.V., Kashnikov,A.Y. and Novikova,N.A.
TITLE Direct Submission
JOURNAL Submitted (28-JUL-2024) Laboratory of Molecular Epidemiology of
Viral Infections, I.N. Blokhina Nizhny Novgorod Research Institute
of Epidemiology and Microbiology, Malaya Yamskaya, 71, Nizhny
Novgorod 603950, Russia
COMMENT ##Assembly-Data-START##
Assembly Method :: Unipro UGENE v. 42.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2909
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII/Hu/RU/2024/GII.7[P7]/Nizhny_Novgorod20"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Russia: Nizhny Novgorod"
/collection_date="11-Jan-2024"
/note="genotype: GII.7[P7]"
gene <1..460
/gene="ORF1"
CDS <1..460
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="XDI41428.1"
/translation="TQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGW
LGKLYQDSILRQLCWTRGPNHENPYESMVPHSQRDTQLMALLGEASLHGPQFYKKVSK
MVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..457
/gene="ORF1"
/product="RdRp"
gene 441..2063
/gene="ORF2"
CDS 441..2063
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XDI41429.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
gene 2063..2836
/gene="ORF3"
CDS 2063..2836
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XDI41430.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPMQSASYVNNQNRQLFKVDPSPSSSSGSSVSSVKTQ
STALSGTSRVDSSSQSTLSTRPSSRTSDWVRSQNERLSPFMNGALQTAYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gacacagaaa ctcagggagt atggtctggt ccccacccgg cctgataaaa ctgaaggccc
61 cctcgtcata actgaagacc tcaccggcct gacattcctc cgtaggtcga ttgctcgaga
121 cccagctggt tggcttggga aactgtacca agactcaatt ctcagacaac tatgctggac
181 aagggggcct aaccatgaga acccgtacga gagtatggtt cctcattctc agcgggatac
241 acagctcatg gcccttcttg gtgaggcctc gctgcatggt ccacagtttt acaagaaagt
301 tagcaagatg gtcatcaatg agattaaaag tggtggtctg gagttttatg tgcccagaca
361 agaggccatg ttcaggtgga tgagattctc tgacctcagc acatgggagg gcgatcgcaa
421 tcttgctccc gaaggtgtga atgaagatgg cgtcgaatga cgcagctcca tctaatgatg
481 gtgcagcagg cctcgtgcca gagatcaaca atgaggtcat gccccttgag cccgtggctg
541 gtgcatcgct ggcgacacca gttgtcgggc aacaaaacat aattgatccc tggataagaa
601 ataattttgt acaagctcct gcaggtgagt tcacagtttc tcctagaaat tcccctggtg
661 aaattttgct tgatttggag ttgggaccag agttgaaccc ctatcttgct catcttgccc
721 gtatgtacaa tgggcacgct ggtggcatgg aagtgcaaat tgtgttggct gggaacgcgt
781 tcacagctgg caagatcata tttgctgcca tccctccagg gttcccatat gaaaatttgt
841 caccttcaca aattacaatg tgcccccatg ttataattga tgttagacaa ttagagccag
901 tcttattacc tatgccagat atcagaaata atttcttcca ttataatcag ggtaatgatc
961 caaaattaag actggtagct atgctctata ctcctttaag ggctaataat tctggtgatg
1021 atgtgttcac ggtttcttgt agggttctca ctaaaccatc acctgatttt gaattcacat
1081 ttttggtccc ccctacagtt gaatccaaga ccaagcaatt cacattgccc atccttaaaa
1141 tatcagagat gaccaactca agattcccag tgcctgtgga aatgatgtac acagcaagga
1201 atgagaatca agttgtccag ccacagaatg gtagggtcac actcgatggc gagctattgg
1261 gcaccacgcc cttgttggct gtcaacatct gcaaattcaa gggagaggtc atagctaaga
1321 atggagatgt gagatcctat aggatggaca tggaaatcac caacactgat ggcaccccaa
1381 ttgaccccac tgaagataca cctggtccca ttggatcacc tgactttcaa ggtatactct
1441 ttggcgttgc cagtcagcgc aacaaaaatg agcagaatcc tgctaccaga gcccatgaag
1501 ccaacatcaa tactggtggg gaccaatatg cccccaaatt ggcccaagtg aaattctttt
1561 cagagtccca ggatttcgag gtgcaccaac ccacagtttt caccccagtt ggcgtggcag
1621 gtgatacttc ccaccctttc agacagtggg ttctgcctcg atatggtgga catctcacca
1681 acaacactca cttggctcca gcagtggccc ccctattccc aggtgagcag attctgttct
1741 ttagatcaca aatacctagt tcaggcggcc atgaattggg ttacatggac tgccttgtcc
1801 cgcaggaatg ggtccaacac ttctaccaag aagctgccac agctcagtct gaggtggcgc
1861 tcataaggtt cattaaccct gacactggca gagtcctctt tgaggccaag ctacacaagc
1921 aaggctttat aactgtggct cacaccggtg acaacccaat tgtcatgcca ccaaatgggt
1981 acttcagatt tgaagcctgg gtcaatcagt tttactcact cgcccccgtg ggaactggga
2041 atgggcgtag gaggatccaa taatggccag tgctttcttt gcaaatttgg cagggggcgt
2101 cgcctccaat ggaatcagtt cactcataaa tgctggggct aatgctatta accaaaaggt
2161 tgagtttgat tataataaac aactccaaaa tgcatccttc tcccacgata aagaaatgct
2221 ccaagcccaa attgaagcca ctaaacgttt gcaacaagag atgattgaca taaaacaagg
2281 ggtgctgacg gctgcgggat tctctcccac ggatgccgcg aggggttctg ttggcgcgcc
2341 aatgacaaaa ttagttgatt ggagtggtac cagatattgg gctcctggtg ccatgaggac
2401 aacaggatat tcaggaactt ttactcactt gcctcctatg cagtctgctt catatgttaa
2461 taatcagaat agacagcttt ttaaagtaga tccttctcct tcttcttcaa gtggctcttc
2521 agtttcttct gttaaaacac aatcaactgc tctctccggc acttcaaggg tggactcttc
2581 atctcagtca accctgtcga ccaggccgag ctcaaggaca tctgactggg tacgtagcca
2641 aaatgaaagg ttgagcccct tcatgaatgg agcgttgcaa acagcgtatg taacgccacc
2701 atctagtagg gcatcaagtg tcagcacagt ctcgaccgtg ccgaaagagg ttttggactc
2761 ctggacgcct atgtttaaca ctcacaggca gccgctcttc gcccacttgc gtaggcgagg
2821 ggagtcacag atttagtgaa aagatcaatt gggaaagttt gattagtttt cttttctatt
2881 attcctttaa tttttctttt aaaaaaaaa
//