Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| PP645198 | GII.8 | |
|
|---|---|---|---|
| GII.P8 |
ORF1: 1..4929
ORF2: 4910..6523
ORF3: 6523..7296
LOCUS PP645198 7315 bp RNA linear VRL 16-APR-2024
DEFINITION Norovirus GII isolate GII/Hu/TH/2023/GII.8/NoV34 nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION PP645198
VERSION PP645198.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7315)
AUTHORS Kongjorn,S., Phatsamarn,T., Roychoudhury,P., Sereewit,J.,
Singchai,P., Sobolik,E.B., Greninger,A.L., Tacharoenmuang,R. and
Rojanawiwat,A.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2024) Virology, University of Washington, 850
Republican St, Seattle, WA 98109, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 2023; metaspades v. 2024
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7315
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII/Hu/TH/2023/GII.8/NoV34"
/isolation_source="Rectal Swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Thailand"
/collection_date="2023-06-10"
/note="genotype: GII.8"
gene <1..4929
/gene="ORF1"
CDS <1..4929
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WZD51299.1"
/translation="VKTKDQPRVLVNGKALEVPPPPPNGEDVVYYNSKDDTVYGLPNL
TTVSCEGENLPYTVPPLSEREHRAAPEPLPGTILEMWDGEFYHYAIYVSGGKAIGVHK
PPAAISLATIQLTPISLYWRPVYVPNYLVHPDTLKSLAGEKFPYTAFNNNCYNFCCWV
LDLKDSWLNRRSITRTTGFFKPYQSWNKKPLPTVDDGKIKKVANAVLCALGSLFSKPI
KDLIGKLKPLNFLNLLASCDWTFSGVVETVILVAELFGVFWTPPDVSNFIASLVGDFE
LQGPEDLAVELVPIIMGGVGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLV
MKWFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTALLKDRDSLLTYMKTLDLEEEK
ARKLSTKSSSPDIVGTINAILARIAAARSLLHRAKEEMYSRPRPVVVMISGRPGVGKT
HMARHLAKSVAGTMSGDQRVGLIPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALALQ
ELADTCPVTLNCDRIENKGKMFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAE
APTIEKAKKDFPGQPDMWKEHFKADFSHLKLTLAPQGGFDKNGNTPHGKGTMKTLTQG
SLTARVAGLVHERKDEFQLQGGELQVYNFDTNKVSAFRKLAADNNYGFLETMRVGSSL
KDVKTVEDLKCALKSVSFKECEIIYRNVKYRVSSDGCGKVSIEKLADNNSQTTREIIT
AVTRLRQARARYYISCFQDLVYTLLQVAGASFVINRIVKKFNWERWVKAPETDEPTPS
NDKPDTEEEWEIAPKDVDSEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRLREEKQ
GRYTIEEYLQDRDRYYEELAVARATEENFCEEEEIKIRQRIFRPTKKQRKEERGVLGL
VTGADIRKRKPDDFQPKGRLWADDSRSVDYNEKIEFEAPPSVWSRIVPLGTGWGFWVS
SNLLITTTHVLPKGVKELFGVDIKQVQVHKSGEFCRFRFPKPVRPDVSGLVLEEGAPE
GTVCSVLIKRSTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPG
DCGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGPDGEAVLEGGEDHGTYCGAPIL
APGKAPKLSTKTKFWRSSPDSLPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTE
PRGKPPRPSVLEEAKKTVMNVLEQTIEPAKPWTYSQACASLDKTTSSGSPHHVRKNEH
WNGESFTGPLADQASKANLMYEEGKHMDPMYTAALKDELVKTDKIYKKIKKRLLWGSD
LGTMVRCARAFGGLLDSMKESCISLPCRVGMNINEDGPLIFEKHSKYTYHYDADYSRW
DSTQQRAVLSAAMEVMVKFSAEPELAQVVAEDLLAPSRLDVGDFVISVQEGLPSGVPC
TSQWNSIAHWILTLSAMSEVSGLSPEVVQANSCFSFYGDDEIVSTDINLDPEKLTRKL
REYGLVPTRPDKTEGPLVITQDLNGLTFLRRTIVRDPAGWFGKLDRDSILRQLYWTRG
PNHENPFESMIPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQ
EAMFRWMRFSDLSTWEGDRNLAPENVNEDGVE"
mat_peptide <1..834
/gene="ORF1"
/product="p48"
mat_peptide 835..1932
/gene="ORF1"
/product="NTPase"
mat_peptide 1933..2454
/gene="ORF1"
/product="p22"
mat_peptide 2455..2853
/gene="ORF1"
/product="VPg"
mat_peptide 2854..3396
/gene="ORF1"
/product="Pro"
mat_peptide 3397..4926
/gene="ORF1"
/product="RdRp"
gene 4910..6523
/gene="ORF2"
CDS 4910..6523
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WZD51300.1"
/translation="MKMASNDAAPSNDGAAGLVPEINHEVMAIEPVAGASLAAPVVGQ
LNIIDPWIRNNFVQAPAGEFTVSPRNAPGEFLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAVIPPGFPYENLSPAQLTMCPHVVVDVRQLEPILLPMPD
IRNTFFHYNQSNGPKLRLVAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFEFNFLVPP
SVESKTKAFTLPILKISEMTNSRFPIPVDQMYTSRNENIVVQPQNGRVTLDGELQGTT
TLQPVSICGFRGTLQTRLADQPNYTYQVHLENLDGSPVDPTDEVPAPLGTPDFQAQLF
GVVSQRSSDNATRAHEARVNTNDPTFAPQIAQVRFKSPSHDFFDNEPIKFTPVGISVD
SENGYNQWLLPRYGGHLTNNTHLAPSVSPMFPGEQILFFRSFMPGASGHTDGAIDCLL
PQEWVAHFYQEAATAQTDVALIRFVNPDSGRVLFEGKLHKQGFITISNSGDHPIVMPA
NGYFRFEAWVNQFYSLAPVGTGSGRRRVQ"
gene 6523..7296
/gene="ORF3"
CDS 6523..7296
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WZD51301.1"
/translation="MAGAFLAGLAGDVVSSGIGSLINAGANAVNQKVEYDFNRQLQEA
SFKHDKEMLNAQINATTKLQRDMIAIKQGVLTAGGFSPTDAARGSINAPTTKILDWNG
SRYWAPGSMRTTAYSGNFTSQGVKQPTPIVRSVKPQVQQSPAPSSVYSVGSVRSQSTQ
STQLTGSGTVSRAPTPSTTTTLSRTSEWVRSQNDRLSPFMGGALQTAFITPPSSKASS
SSGTVSTVPKEILDSWTPAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 gtgaaaacca aagatcagcc cagggtgctg gtcaatggta aggccttgga ggtaccgccc
61 ccaccaccaa atggtgaaga cgtggtctac tataacagca aggatgacac cgtgtacggt
121 ctaccaaatc taacaacagt cagctgtgaa ggtgaaaacc ttccgtacac agtcccccct
181 ctcagcgaga gagagcacag ggcagcacca gaaccattac ctggtaccat actagagatg
241 tgggatggtg aattctacca ttatgcgata tatgtctctg gtggcaaggc cataggggtg
301 cacaaacccc cagctgcaat cagccttgcc actatccagc ttacgcctat atcgctttac
361 tggaggcccg tttatgtccc taattacttg gtccaccctg acacactcaa gagcttagcc
421 ggtgaaaaat tcccatacac cgcatttaac aacaactgtt acaatttctg ttgctgggtt
481 cttgacctga aagattcgtg gctcaaccgc agatcaataa ctagaacaac cggtttcttc
541 aagccttatc agtcctggaa caagaaacca cttccgacgg tggatgatgg aaaaatcaag
601 aaagtcgcca atgcagtcct atgtgccctt ggttcactat tctcaaaacc tattaaggac
661 ttgatcggga agctgaaacc actgaatttc ttgaatctcc tcgcctcgtg cgactggacc
721 ttctccggag tggttgagac cgtcatacta gttgctgagc tgtttggtgt gttttggacc
781 ccccccgacg tgtcgaattt catcgcgtca ctcgtcgggg attttgagct gcaaggtcca
841 gaggatttag ctgtggagtt ggtgccgatc atcatgggcg gtgtcgggat ggtgctggga
901 ttcaccgccg agaagatcgg ccgaatgcta tcatcggctg catcgaccct tagggcctgt
961 aaagacctag gtaactacgc ccttgacata cttaaattgg tcatgaagtg gttcttccca
1021 aagaaggagg aaaaggcaga gatggaaacc ttgagggcta tagaggatgc tgtcttagac
1081 atggaggcga ttgggaataa ccacctcact gctctgttga aagacaggga cagcctccta
1141 acttacatga agactctaga ccttgaagaa gaaaaggcga gaaagctatc cacaaaatca
1201 tcgtcccctg acattgtggg tactatcaat gccatactag ccagaattgc tgcggctagg
1261 tctctcctgc acagagccaa agaagaaatg tacagcagac ctaggcctgt cgtggtgatg
1321 atatcaggga gaccaggggt tggtaaaacc catatggcta gacacctcgc caagagtgtg
1381 gcgggcacca tgagtggtga ccaaagggtg ggcctcatcc cccgcaatgg agttgaccat
1441 tgggatgcct ataggggaga acgagtcgtc ttgtgggacg actatggtat gggcaaccca
1501 gtgaaggacg ccctcgctct gcaagaacta gcagacactt gtccagtcac tctcaattgt
1561 gacaggatag agaacaaagg gaagatgttt gacagcgagg taataatcat aacaactaat
1621 ttggccaacc ccgccccgct tgattatgtc aactttgaag cttgttcccg tagaatcgac
1681 ttcctcgtct acgcagaagc cccaactatt gagaaggcga agaaggattt tcccgggcaa
1741 ccagacatgt ggaaggagca cttcaaagca gacttctccc acctcaaact cacactggcc
1801 ccgcaaggcg gttttgacaa gaacggcaac acgccacatg ggaaggggac tatgaagacc
1861 ttaacacagg gttccctcac agcaagagtg gctgggctcg tgcacgaaag gaaagatgag
1921 tttcagttac agggtggaga gttgcaggtc tacaattttg acacaaacaa ggtatcggct
1981 ttcaggaagc ttgctgcaga taacaactat gggttcctgg agacaatgag agtcggctcc
2041 tcactcaagg acgtcaagac agtggaagat cttaaatgtg ctcttaagag tgtcagtttc
2101 aaagaatgtg aaataatcta caggaatgtc aagtaccgcg tatcatcaga cggttgcggt
2161 aaggtcagca tagagaaact ggcagataac aactcccaaa caaccagaga gattatcacg
2221 gccgtcacta gactacgaca ggctcgtgct aggtactaca tcagttgctt ccaagaccta
2281 gtctacacac tcttgcaggt tgccggagcc tcatttgtca ttaacagaat agtcaagaag
2341 ttcaactggg aacgatgggt caaagctcca gaaacagatg aacccacacc aagtaatgac
2401 aagcccgaca ctgaagagga atgggagatc gcccccaaag atgtggactc tgagggtaaa
2461 aagggaaaga acaagaaggg caggggacgt aagcacactg cgttctccag caaagggctc
2521 agtgatgagg agtatgatga attcaaaaga ctaagggaag agaaacaggg ccgctacaca
2581 atagaggagt acctccagga cagggaccgg tactatgaag agctggcagt ggcccgggcc
2641 actgaggaga acttctgtga agaggaagag ataaagatca ggcaaaggat attccgcccc
2701 accaaaaagc agaggaagga ggagcgtggg gttctgggac tcgtcacagg agcagacatc
2761 aggaaacgga aacccgatga cttccaacca aaaggaagat tgtgggcaga tgactctagg
2821 agcgtcgact acaatgagaa gatcgagttt gaggctcctc ctagcgtctg gtcaagaatc
2881 gtcccgcttg gaactggttg ggggttctgg gtctcatcca acttattaat taccaccaca
2941 catgttctgc ccaaaggtgt taaagagctt tttggggtgg atatcaaaca agtccaagtt
3001 cacaaatcag gcgaattttg cagattcagg ttcccaaaac cagtgaggcc agatgtctct
3061 gggttggtgt tagaagaagg ggcccccgaa ggcacagtgt gctctgttct catcaagagg
3121 tctacaggag agatgatccc cctcgcagtt aggatgggca cccacgcctc tatgaagatt
3181 caggggcgca ctgttggcgg ccagatgggc atgctgctca ctggagccaa cgctaagaac
3241 atggatttgg gtaccggccc cggggattgt ggttgcccgt acatatacaa gaggggcaat
3301 gacatcgtag tggccggcgt ccacacagca gcggcgcgcg ggggcaacac agtcatctgc
3361 gcaacccaag gacctgatgg tgaggcagtg ttggaagggg gagaggacca cggtacttac
3421 tgtggagccc caatactggc ccctggcaaa gcgccgaagc tcagcacaaa gaccaagttt
3481 tggcgctcat cccctgattc ccttccccct gggacgtatg aaccagctta ccttgggggc
3541 aaggaccccc gtgtggagaa agggccgtca ctccaacaag tgatgcgaga ccaactcaaa
3601 cccttcacag aacccagggg caagccacct aggccgtcag tgctggagga agccaagaag
3661 acagtcatga atgtactgga gcagaccata gaaccagcta agccatggac ctactctcaa
3721 gcctgtgctt cactggataa aacaacatcc agtggcagtc ctcaccatgt cagaaagaat
3781 gaacactgga acggggagtc ttttactggg cctcttgcag atcaagcctc aaaagccaac
3841 ctaatgtatg aggaaggtaa acatatggac cctatgtaca cagcagccct caaagacgag
3901 ctggtaaaaa ccgacaaaat ctacaagaaa atcaagaaga ggttgttgtg ggggtctgat
3961 ctggggacaa tggtgaggtg tgctcgagcg tttggaggat tgctcgacag catgaaagag
4021 agttgcatct ccttaccttg tagggttggc atgaacataa atgaagatgg accactcata
4081 tttgaaaaac actccaaata cacctatcac tatgatgctg attactctag gtgggactca
4141 acacaacaga gggccgtact gagtgcagct atggaggtaa tggtgaagtt ctctgctgag
4201 ccggaactgg ctcaggtggt tgccgaagac ctccttgcac ccagccgtct tgacgtgggt
4261 gactttgtca tctccgttca agaaggtctc ccatcgggtg tcccctgcac atcacagtgg
4321 aactcaattg ctcattggat tttgactctt agtgctatgt ctgaggtctc tggtctttcc
4381 cctgaggttg tgcaagccaa ctcctgtttc tcattctatg gggatgatga gatagtcagc
4441 acagacataa atctggaccc agaaaaactc accaggaaac tgagggagta tggcctcgtc
4501 ccaacaaggc cagataaaac tgaaggccca cttgtgatta ctcaggattt gaatggtctc
4561 acatttctga ggcgaaccat agtgcgggac cccgcaggct ggtttggaaa actggaccgt
4621 gactccattc taaggcagtt atactggact agaggaccca accatgagaa cccctttgaa
4681 agcatgattc ctcactccca gagagcaacc cagttaatgg cccttcttgg agaagcctcg
4741 ctgcatggtc cccagtttta caagaaggtg agtaaaatgg taatcaacga gatcaagagt
4801 ggtggtctgg agttttacgt gcccagacag gaggccatgt ttagatggat gagattttca
4861 gacctcagca cgtgggaggg cgatcgcaat ctggctcccg agaatgtgaa tgaagatggc
4921 gtcgaatgac gcagctccat cgaatgatgg cgcggctggc ctcgtaccag agatcaacca
4981 tgaggtcatg gccatagagc ctgtagcagg agcttcttta gcagctcctg ttgtaggaca
5041 acttaatata attgatccct ggattagaaa taactttgta caagcccctg ctggagaatt
5101 cactgtttcg cctaggaatg ctccaggtga atttttatta gatttagagt taggtccaga
5161 attgaatcct taccttgctc accttgcacg catgtataat gggcatgcag gtggtatgga
5221 ggtgcagata gtgcttgctg ggaatgcgtt cacagcgggc aaaatattgt ttgcagttat
5281 accgcctgga ttcccctatg aaaatttgtc acctgcacaa ttgaccatgt gcccacatgt
5341 agtggtggat gtgaggcagc ttgaaccaat cttgctgccc atgccagaca tccgcaacac
5401 attcttccat tacaaccaga gcaacgggcc aaaacttaga ttagtagcta tgctttacac
5461 acccctaagg gctaataatg ctggtgatga tgtcttcaca gtttcctgca gggttttgac
5521 tcgcccatca ccagattttg aatttaattt tcttgtcccc ccatccgttg aatctaagac
5581 taaagctttc acccttccaa ttcttaagat atctgagatg acaaattcaa gatttcccat
5641 accagttgac cagatgtaca ctagtaggaa tgaaaatata gttgttcaac cacaaaatgg
5701 tagagtgaca cttgatggag agttacaggg cacaaccaca ctccaaccgg tgtccatttg
5761 tggcttccga gggacgctgc agaccaggct ggcagatcaa ccaaattaca cataccaagt
5821 gcatcttgag aatttggacg gctcacccgt tgacccgaca gatgaagttc cagcccccct
5881 ggggacacca gattttcagg cccagctatt tggagttgtc agccaaagga gtagtgataa
5941 tgccaccagg gcacatgagg ccagggtcaa caccaacgat cctaccttcg cgccccagat
6001 cgcccaggtg cgtttcaaat caccatccca cgacttcttt gacaatgagc ccatcaaatt
6061 cacaccagtt ggaatcagtg ttgatagcga aaatggttac aaccaatggc tcctacccag
6121 gtatggtgga cacctgacaa acaacaccca cctggccccc tctgtgtccc caatgttccc
6181 cggcgagcag attctcttct tccgctcgtt catgccaggt gccagtggtc acactgatgg
6241 tgctattgac tgccttttac cacaagagtg ggttgcccac ttctatcagg aggccgcaac
6301 tgcgcaaaca gatgtggctc tgatcagatt tgtgaacccc gactcaggca gagtgctatt
6361 tgaagggaag ttgcacaagc agggttttat aaccatctcc aacagtgggg accaccccat
6421 tgttatgcct gctaatggat acttcagatt tgaggcatgg gtcaaccaat tttactctct
6481 cgcccccgtg ggaactggaa gtgggcgcag aagagttcaa taatggctgg agcttttctt
6541 gctggtctgg ctggtgatgt ggtgtcctct ggcatcgggt cactcatcaa tgcaggtgct
6601 aatgcagtga accaaaaggt tgaatatgac ttcaataggc aactccaaga agcttctttt
6661 aaacatgaca aggagatgtt gaatgctcaa attaatgcca caaccaaatt gcaaagggac
6721 atgattgcca ttaagcaggg ggttttgacc gctggcggct tttcccccac tgacgctgca
6781 aggggttcca tcaatgctcc aaccaccaaa attcttgact ggaacgggtc taggtactgg
6841 gcaccaggat caatgagaac aacagcgtac tctggcaatt tcacatcaca gggagttaag
6901 cagcccacac ccattgttag gtctgtaaaa cctcaagtac agcaatctcc tgccccttct
6961 tctgtttatt ctgtaggttc tgttaggtca caatcaacac aatcaaccca actaacaggg
7021 tcagggactg tatcaagggc acccaccccc tcaacaacca caacattgtc cagaacaagt
7081 gagtgggtga ggagccagaa tgataggttg agccccttta tgggaggcgc actccagaca
7141 gctttcatca cgcccccatc gagtaaggct tcatcctcat caggaacagt ctcaaccgtt
7201 cctaaagaaa ttttggactc ctggactcct gcatttaaca cgcgcaggca gccgctcttc
7261 gctcacatac gtaagcgagg ggagtcacgg gcttagtgaa aagaatgatt tggtt
//