Typing tool
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Typing tool
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Complete norovirus genomes
| PP587393 | GII.17 | |
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| GII.P17 |
ORF1: 5..5113
ORF2: 5094..6716
ORF3: 6716..7495
LOCUS PP587393 7561 bp RNA linear VRL 11-OCT-2024
DEFINITION Norovirus GII isolate NoV23-013, complete genome.
ACCESSION PP587393
VERSION PP587393.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7561)
AUTHORS Andon,P., Kongjorn,S., Phatsamarn,T., Rojanawiwat,A.,
Roychoudhury,P., Sereewit,J., Singchai,P., Sobolik,E.B.,
Greninger,A.L. and Tacharoenmuang,R.
TITLE Direct Submission
JOURNAL Submitted (04-APR-2024) Virology, University of Washington, 850
Republican St, Seattle, WA 98109, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 2023; revica v. 2024
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7561
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NoV23-013"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Thailand"
/collection_date="28-Feb-2023"
/note="genotype: GII"
gene 5..5113
/gene="ORF1"
CDS 5..5113
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WYV83704.1"
/translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR
SKQPPPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVA
QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISFAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI
IGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEELAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTILLKDKDSLATYMRTLDLEEEKARK
LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV
KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALH
HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEESDEPEDR
GGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGTEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTT
PGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..1003
/gene="ORF1"
/product="p48"
mat_peptide 1004..2101
/gene="ORF1"
/product="NTPase"
mat_peptide 2102..2638
/gene="ORF1"
/product="p22"
mat_peptide 2639..3037
/gene="ORF1"
/product="VPg"
mat_peptide 3038..3580
/gene="ORF1"
/product="Pro"
mat_peptide 3581..5110
/gene="ORF1"
/product="RdRp"
gene 5094..6716
/gene="ORF2"
CDS 5094..6716
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WYV83705.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGIN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6716..7495
/gene="ORF3"
CDS 6716..7495
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WYV83706.1"
/translation="MAGAFIAGLAGDLLTSSVGSLVNAGANAINQKVDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSPVPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa
61 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaat atgtctgtca cttttaagaa
121 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc
181 accaaggcca ccgacaccgg aattggtgaa gaaaatacct ccacccccac ccaatggcga
241 ggatgaacca gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac
301 aactgtggca caacctgacg cacagaacac agcttacagt gttcccccac ttagccagag
361 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga
421 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc
481 tgctgcaata agctttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt
541 ctacactccc cagtatttga tagatccagg aactcttaag aacttgagtg gggagacttt
601 cccatacacg gcctttgaca ataactgcta tgccttctgt tgctgggtcc tagacctcaa
661 cgactcctgg cttagcagga gaatgatcca aagaacaact ggatttttca aaccttatca
721 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aagccgcgaa
781 tgctgtccta tgcgctctct cctcactctt cactagaccc attaaggaca tcattgggaa
841 gcttagacca ctgaacattc ttaatatact ggcaacctgc gattggactt ttgcaggcat
901 agtggaatcc ttgatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt
961 gtctgcgatg attgctccct tactcggcga ctacgagatg caaggccccg aggaactggc
1021 tgtggaactt gtacccgtgg tgatgggggg aataggtttg gtgttaggat tcaccaaaga
1081 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgca aggatttagg
1141 atcttatgga ttggagatac tcaaattggt catgaagtgg ttcttcccca aaaaggagga
1201 ggctaacgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat
1261 agaaaacaat cacatgacca tccttctcaa ggataaagac agcctggcca catacatgag
1321 gactcttgac ttggaagaag agaaagcaag gaaactgtcg accaaatcgg cgtcacctga
1381 catcgtgggt acaataaacg cactgctggc taggatagca gccgccagat cactggtcca
1441 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag
1501 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagtcg cgtcaacact
1561 gtcaggcgac caaagaatcg gactggtacc taggaatggt gtcgaccatt gggacgccta
1621 caagggagaa agggtggtcc tgtgggatga ttatggtatg agcaacccta tacaggacgc
1681 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg ataggattga
1741 aaacaaagga aaagtgttcg acagtgacgc cataattata acaaccaacc ttgcaaaccc
1801 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta
1861 tgcagacgca cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg
1921 gaaagaccat ttcagaccag atttctcaca cattaaactt cagctggcac cacagggagg
1981 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtaaagtccc taacgattgg
2041 ttccctgatc gccagggcct ccggcttgct ccacgagaga atggatgagt tcgagctcca
2101 aggctctgac ctgccaacct tcaattttga ccgcaataaa gtcgctgcct tcagacaatt
2161 ggcagctgaa aacaaatatg gtcttatgga cacattgagg gtcggcaacc aactgaaaag
2221 tgttaagacc ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca
2281 aatagtgtat aatggatgca cctatactat ggaatctgat gggaggggca aggttgtggt
2341 tgaaaaggta caaaacgcaa cagttcaaac caacaatgaa ctcgtagggg cactccacca
2401 cctgagatct gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct
2461 actccaaatt gctggcgcag cctttgtcac ctcacgcatc gtgaggcgca tgaatatatc
2521 aaacctctgg tcgaagccac ccattgagga gagtgatgag cctgaggaca gaggagggtg
2581 ccccaagccc agggatgaag atgacctcac tattgactct agagacatta aagtggaagg
2641 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg
2701 cctcagtgat gaagagtacg acgagtacaa gagaatcaga gaggagagga atggcaagta
2761 ctcaatagag gaatacctcc aagacaggga caggtactat gaagagcttg ccattgctaa
2821 ggccactgag gaagacttct gtgaagagga ggagatcaaa atccgccaga gaatcttccg
2881 acccaccagg aagcaacgga aagaggaaag ggccacgctc gggcttgtca caggaacgga
2941 aatcagaaag aggaatccag atgattttaa accaaaagga aaattgtggg ctgatgacaa
3001 caggagcgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag
3061 gatagtcaac tttggcacag gctggggatt ctgggtctct ccaagtctct ttataacttc
3121 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtgcccataa accaaatcca
3181 aatccacaaa tctggagaat tttgccgctt gcggtttcca aagccaatta gaccagacgt
3241 gagtgggatg atcttggaag agggcgcccc tgaaggcact gttgtgtcta ttctcatcaa
3301 aaggacaaca ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa
3361 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa
3421 aggcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaaaagggg
3481 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat
3541 atgtgccaca cagggaagtg agggtgaagc cactcttgaa ggagatgaca acaagggcac
3601 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaagacaaa
3661 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg
3721 tgggagggac ccgcgcgtga agggaggccc atctctgcaa caagttatga gagatcaact
3781 caaacctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa
3841 gaagactatc atcaatgttc tggaacagac cattgaccct cctcaaaagt ggtcatatgc
3901 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgttcggaa
3961 gaatgactac tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc
4021 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga
4081 cgagctcgtg aaaactgaca aaatttatgg caaaatcaag aaaagactcc tatggggctc
4141 tgacctctcc acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaactcaa
4201 agcaaattgt atcacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat
4261 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga
4321 ctccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc
4381 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt
4441 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca
4501 atggaattct attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacgggatt
4561 aggtcctgac atcattcaag ctaactccat gtactctttc tatggtgatg atgagattgt
4621 gagcacagac ataaaattgg acccagagaa attaaccgca aagctcaaag aatatggcct
4681 taaacccact cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg
4741 gttaactttc cttcgccgga cagtcacccg tgatccagca ggttggtttg gaaagttgga
4801 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag
4861 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagagtc
4921 ctctctacat ggaccctcat tttacagcaa ggttagcaag ttagtcatat ctgaacttaa
4981 agagggagga atggattttt atgtgcccag acaagaatca atgttcagat ggatgaggtt
5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga
5101 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca
5161 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg
5221 gccaaaacaa tataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag
5281 agttcacagt gtcacccaga aactctcctg gagaaatttt attaaattta gagttgggcc
5341 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag
5401 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg
5461 ccgtcccgcc aaattttcca gtggaattct taagcccagc ccagatcaca atgctcccac
5521 acttaatagt agacgttagg actcttgaac caatcatgat cccactccct gatgttagga
5581 atacattctt ccattataat aatcagccta acagccgcat gagattagtg gctatgctct
5641 ataccccact cagatctaat ggttcaggtg atgacgtctt tactgtctct tgtagggttt
5701 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta
5761 aaaccaagcc tttttcccta cctattttaa ccctttctga gctcacaaat tcgaggtttc
5821 cagtccccat cgattcgctt tttaccgccc agaataatgt gttgcaggtg cagtgtcaaa
5881 atggcaggtg tacacttgat ggtgagctac aaggcacaac ccagttgctc ccaaccggca
5941 tctgtgcatt cagaggacgg gtgacagcac aaatcaacca acgtgacagg tggcacatgc
6001 aactgcaaaa cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg
6061 gtacacctga cttcaagggc gtcgtgtttg gaatggtaag ccaaagaaat gtgggtagtg
6121 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg
6181 tccccaaatt aggttctgtc aatcttagaa ttagtaataa tgatgacttc caattccagc
6241 caacaaaatt cacaccagtg ggcatcaatg atgatgatga tgatcacccg ttcagacagt
6301 gggagctacc aaattattca ggggagctta ccttgaacat gaatcttgcc cccccagttg
6361 ctccaaattt tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag
6421 gttataacca aggtattata gattgtctta tcccccaaga atggatccaa catttctatc
6481 aggaatcagc accctcccag tcagatgtgg ccctaatcag gtatgtcaac cccgatacgg
6541 gacgtacact gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg
6601 gagattatcc tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc
6661 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc
6721 tggggctttc attgcaggat tggcaggcga cttgctcacg tcatctgtgg gctcccttgt
6781 gaacgcaggg gcaaacgcca tcaaccaaaa ggtagacttt gaaaacaata aacaactcca
6841 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca
6901 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc
6961 cactgatgca gcaaggggat ccattggtgc acccatgaca aaggtgcttg actggtctgg
7021 cactcgatac tgggcaccca attccacaaa gacaactggc tattcgggac aattcacctc
7081 ttcacctgtg catatgtcca gcccaaatgc tccacaatca aaacctgcaa agcctaggtc
7141 tccagttcct tcatcctctt ctagtagtgt ttatagtatg tatactcaat ctactcattt
7201 gacatctggc tcttctagta atgcttcttc tgcctccaca aagttgacaa atttaagctc
7261 tggctcctct caaaacagaa cagcagaatg ggtgaatcaa cagagaagtc ttagcccttt
7321 catgagtggc gcacttaaca tctcacatgt tacgccaccc tcaagtaggg cttccagttc
7381 tgggacggtc tcaaccgtgc caaaggaagt tttggactcc tggacgtctg cgtttaacac
7441 acacagacag ccgctcttcg cacacctcag ggtgaggggg gagtcacgtg tttagtgaaa
7501 agaaataatt ggctataatg tgatttcttt ctgaatttgg ctaatttgca tcttttaaaa
7561 a
//