Typing tool
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Typing tool
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Complete norovirus genomes
| OR793098 | GII.17 | |
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| GII.P17 |
ORF1: 1..5109
ORF2: 5090..6712
ORF3: 6712..7491
LOCUS OR793098 7491 bp RNA linear VRL 01-DEC-2025
DEFINITION Norovirus GII isolate SDLY201837 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION OR793098
VERSION OR793098.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7491)
AUTHORS Li,C., Song,S., Huang,X., Liu,X., Lv,H., Shen,Y., Wei,X., Zhang,W.
and Xu,Y.
TITLE Direct Submission
JOURNAL Submitted (10-NOV-2023) school of public health, Shandong
university, 44 Wenhua West Road, Jinan, Shandong 250000, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7491
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="SDLY201837"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="2018-08-09"
/note="genotype: GII.17[P17]"
gene 1..5109
/gene="ORF1"
CDS 1..5109
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WPB15490.1"
/translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR
SKQPPPGETKQIQRPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVV
QPNAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI
IGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARR
LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKGV
KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGKGKVVVEKVQNATVQTNNELVGALH
HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDR
GGCPKPRDEDGLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTT
PGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 1..999
/gene="ORF1"
/product="p48"
mat_peptide 1000..2097
/gene="ORF1"
/product="NTPase"
mat_peptide 2098..2634
/gene="ORF1"
/product="p22"
mat_peptide 2635..3033
/gene="ORF1"
/product="VPg"
mat_peptide 3034..3576
/gene="ORF1"
/product="Pro"
mat_peptide 3577..5106
/gene="ORF1"
/product="RdRp"
gene 5090..6712
/gene="ORF2"
CDS 5090..6712
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WPB15491.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSINLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6712..7491
/gene="ORF3"
CDS 6712..7491
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WPB15492.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPRSKPAKPRSLAPSSSSSSVYSMYTQST
HLASGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgttgctg gcaaaaacaa caacaacgac
61 aaggaaaaat cttcaagtga cagcttgttt gctaacatgt ctgtcacttt taagaaagcc
121 ctcggggcgc ggtctaaaca accgcccccg ggagaaacaa aacaaataca aagaccacca
181 aggccaccga caccggaatt ggtgaagaga atacctccac ccccacccaa tggcgaggat
241 gaaccaggga tagtgtacaa ggtgggagag ggtgtgtctg ggctgcccga cctaacaact
301 gtggtacaac ctaacgcaca aaacacagct tatagtgttc ccccacttag ccagagagaa
361 gtcggcgaag ctaaagaacc gctgcctggc tccattctgg aaatgtggga tggtgagatc
421 taccactatg ggctgtatgt tgagcggggg catgtgctcg gagtacacaa accacctgct
481 gcaataagcc ttgccaaaat tgaaataaca ccgctgtctc tctactggag agtggtctac
541 actccccagt atttgataga tccaggaact cttaagaact tgagtggaga gactttccca
601 tacacggcct ttgacaacaa ctgttatgcc ttctgttgtt gggtcctaga cctcaacgac
661 tcctggctta gcaggagaat gatccaaaga acaactggat tcttcaaacc ttatcaggat
721 tggaacagaa aacccttacc aaccatggat gaaccgaaaa tcaagaaggc cgcgaatgct
781 gtcctatgcg ctctctcctc actcttcact agacccatta aggacatcat tggaaagctt
841 agaccactga acattctcaa tatactggca acctgcgatt ggacttttgc aggcatagtg
901 gaatccttga tccttcttgc tgaactcttt ggggtgttct ggacaccccc agatgtgtct
961 gcgatgattg ctcccttact cggtgactac gagatgcaag gccccgaaga cctggccgtg
1021 gaacttgtgc ccgtggtgat gggaggaata ggtttggtgt taggattcac caaagaaaag
1081 atcggcaaga tgctttcatc agctgcgacc acacttaggg cctgcaagga cctaggatct
1141 tatggattgg agatactcaa attggtcatg aagtggttct tccccaagaa ggaggaggct
1201 aacgaactag ccatggtgag ggccattgag gatgcagtcc tggatttgga ggcaatagaa
1261 aacaatcaca tgaccaccct tctcaaggat aaagacagcc tggccacata catgaggact
1321 cttgacttgg aagaagagaa agcaaggaga ctgtcaacca aatcggcgtc acctgacatc
1381 gtgggtacaa taaacgcatt gttggctagg atagcagccg ccaggtcact ggtccacaag
1441 gctaaggagg agctctcgag cagacagaga cctgttgttg taatgatatc aggtagacca
1501 ggtataggaa agacccatct ggccagagag ctagccaaga aagttgcgtc aacactgtca
1561 ggcgaccaaa ggattggact ggtacctagg aatggcgtcg accattggga cgcctacaag
1621 ggagaaaggg tggtcctgtg ggacgattat ggtatgagca accctataca ggacgcactg
1681 aggctccaag aattggctga cacctgtcct ctgaccctaa attgtgatag gattgaaaac
1741 aaaggaaaag tgttcgacag tgatgccata attataacaa ccaaccttgc aaacccagca
1801 ccactagact atgtcaactt tgaggcctgc tctagacgca tagacttctt ggtgtatgca
1861 gacgcacctg acattgagaa ggctaagcgt gacttccctg gccaaccaga catgtggaaa
1921 gaccatttca gaccagactt ctcacacatc aaacttcagc tggcaccaca gggaggtttt
1981 gacaaaaatg gcaacacccc acatggcaaa ggtgtggtaa agtccctgac gattggttct
2041 ctgatcgcca gggcctccgg tttgctccac gagagaatgg atgaattcga gctccaaggt
2101 tctgacctgc caaccttcaa ttttgaccgc aacaaagtcg ccgccttcag acaattagca
2161 gctgaaaaca aatatggtct tatggacaca ttgagggtcg gcaaccaact gaaaggtgtt
2221 aagaccctgg atgagctgaa gcaggccata aagaacatca gtatcaagaa gtgtcagata
2281 gtgtataatg gatgcaccta taccatggaa tctgatggga agggcaaggt tgtggttgaa
2341 aaggtacaaa acgcaacagt tcaaaccaac aatgaacttg taggggcact ccaccacctg
2401 agatctgcaa ggataagata ctatgttaaa tgtttccaag aagccattta ctctctactc
2461 caaattgctg gtgcagcctt tgtcacctca cgcatcgtga ggcgcatgaa catatcaaac
2521 ctctggtcga agccacccat cgaggagggt gatgagcctg aagacagagg aggatgcccc
2581 aagcccaggg atgaagatgg cctcactatt gactctagag acattaaagt ggaagggaag
2641 aagggcaaga acaagtctgg ccggggcaag aaacacacag ccttctcttc caagggcctc
2701 agtgatgaag agtacgatga gtacaagaga atcagagagg agaggaatgg caaatactca
2761 atagaggaat acctccaaga tagggacaga tactatgaag agcttgccat tgctaaggcc
2821 actgaggagg acttctgtga ggaggaggag atcaaaatcc gccagagaat cttccgaccc
2881 accaggaagc agcggaaaga ggaaagggcc acgcttgggc ttgtcacagg atcggaaatc
2941 agaaagagga atccagatga ctttaaacca aaaggaaaat tgtgggctga tgacaacagg
3001 agcgtggatt acaatgagag gatagatttt gaggctcccc cgagtgtttg gtctaggata
3061 gtcaactttg gcacaggctg ggggttctgg gtttctccaa gtctctttat aacttcaaca
3121 cacgtcatac caaaaggaat cactgaggcc tttggagtgc ccataaacca aatccaaatt
3181 cacaaatctg gagaattttg ccgcttgcgg tttccaaagc caattagacc agacgtgagt
3241 gggatgatct tggaagaggg cgcccctgaa ggcactgttg tgtctattct catcaaaagg
3301 acaacagggg agctgatgcc tcttgcagtc agaatgggga ctcatgccac aatgaaaatc
3361 caaggtagaa cggtgggtgg tcagatgggt atgcttctca ctggctcaaa tgctaaaggc
3421 atggatctag gcacaacgcc aggtgactgc ggatgtccat acatatacaa aaggggcaat
3481 gaccttgtgg tcattggggt gcacactgca gcagctcgtg gaggcaatac ggtcatatgt
3541 gccacacagg gaagtgaagg tgaagccact cttgaaggag gtgacaacaa gggtacctat
3601 tgtggagccc ccattttggg acctggcaat gcaccaaaat tgagcacaaa gacaaaattc
3661 tggagatcct ctaacgcacc gcttccccca ggtacttatg aaccagcata ccttggtggg
3721 agagacccgc gcgtgaaggg aggcccatct ctgcaacaag ttatgagaga ccaacttaaa
3781 ccttttacag agcccagagg gaagccacca aacccaaatg tcttagagtc agcaaagaag
3841 actatcatca atgttctgga acaaaccatt gacccccctc aaaagtggtc atatgcccaa
3901 gcttgtgcat ccctcgataa gacaacctcc agtggatacc cgcaccacgt ccggaagaat
3961 gactattgga gtggtgaatc cttcacagga aaacttgcag atcaggcttc aaaagcaaat
4021 ctcatgtatg aggaaggcaa gcacatgcaa ccagtttaca ccgcagcact caaagacgag
4081 ctcgtgaaaa ctgacaaaat ttatggcaaa atcaagaaaa gactcctgtg gggttctgac
4141 ctctccacaa tgattcgatg cgccagagca tttggtggtc tcatggatga attcaaagca
4201 aattgtatta cactccctat cagagttggt atgaatatga atgaagatgg tcccataata
4261 tttgagaaac actccaggta caggtaccac tatgatgctg attactcccg ttgggactcc
4321 acacaacagc gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag
4381 ccacagctgg cacaaatagt ggcagaggac ctgctgtcac caagtgtggt tgatgtgggc
4441 gatttcaaaa tcgctatcaa tgaaggccta ccatctggcg tgccttgcac ctcacaatgg
4501 aattctattg cccactggtt acttaccttg tgtgcccttt ctgaagtgac aggattaggt
4561 cctgacatca tacaagctaa ctccatgtac tctttctatg gtgatgatga gattgtgagc
4621 acagacataa aattggaccc agaaaaattg accgcaaagc tcaaagaata tggccttaaa
4681 cccactcggc ccgacaaaac tgaggggccg ttggtgatta gtgaggacct gaatgggttg
4741 actttcctcc gccgaacagt cacccgtgat ccagcaggtt ggtttggaaa gttggaccaa
4801 aactccatcc tcaggcagtt gtactggaca agaggaccca accatgaaga ccccagtgag
4861 accatgatac cacacgcaca aagacctgtg cagctcatgg cactactagg agaatcctcc
4921 ctacatggac cctcatttta cagcaaggtt agcaaattag tcatatctga acttaaagag
4981 ggaggaatgg atttttatgt gcccagacaa gagtcaatgt tcagatggat gaggttctca
5041 gatctaagca catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc
5101 gtcgaatgac gccgctccat ctaatgatgg tgctgctggt ctcgtaccag agggcaacaa
5161 cgagaccctt cccctagaac cagttgcggg cgcagctata gccgcacccg tcactggcca
5221 aaataatata attgacccct ggattagaac aaattttgtg caagcaccaa atggagagtt
5281 cacagtgtca cccagaaact ctcctggaga aattttatta aatttagagt tgggccctga
5341 tttgaaccct tatttggctc atttgtcaag gatgtacaat gggtatgctg gtggagtgga
5401 agtccaggtt ctcctggcag ggaacgcgtt cacagccgga aagatcctct tcgccgccgt
5461 cccgccaaat ttcccagtgg aattcttaag cccagcccag atcacaatgc tcccacattt
5521 aatagtagat gttaggactc ttgaaccaat tatgatccca ctccctgatg ttaggaatac
5581 attcttccat tatagtaacc agcctaacag ccgcatgaga ttagtggcta tgctctacac
5641 cccactcaga tctaatggct caggtgatga tgtctttact gtctcttgca gggttttgac
5701 taggcctact cccgattttg agttcactta tttagtgcca ccttctgttg aatctaaaac
5761 taagcctttt tccttaccta ttttaaccct ttctgagctc acaaactcga ggtttccagt
5821 ccccatcgat tcgcttttca ccgcccagaa taatgtgttg caggtgcagt gtcaaaatgg
5881 caggtgtaca cttgatggtg agttacaagg cacaacccag ttgctcccaa ctggcatctg
5941 tgcattcaga ggacgggtga cagcacaaat taaccaacgt gacaggtggc acatgcaact
6001 gcaaaacctc aatggtacaa catatgaccc aactgatgat gtgccagccc cgctgggtac
6061 acctgacttc aagggcgtcg tgtttgggat ggtaagccaa agaaatgtgg gtaatgatgc
6121 gcctggctca accagagccc aacaggcgtg ggtttcaacc tatagccccc aatttgtccc
6181 caaattaggt tctatcaatc ttagaattag taataatgat gatttccaat tccagccgac
6241 aaaattcaca ccagtgggcg tcaatgatga cgatgatgac cacccgttca gacagtggga
6301 actaccaaac tattcagggg agcttacctt gaatatgaat cttgcccccc cagttgctcc
6361 aaattttcct ggtgaacaat tgttattctt cagatctttc gtgccatgct caggaggtta
6421 caaccaaggt attatagatt gtcttattcc ccaagaatgg atccaacatt tctatcagga
6481 atcagcaccc tcccagtcag acgtggccct aatcaggtat gtcaaccccg atacgggacg
6541 tacactgttt gaagcaaaat tgcacagatc tggttacatt actgtggctc actctggaga
6601 ctatcctctt gttgttccgg ctaatgggca ctttagattt gattcttggg taaatcagtt
6661 ttactcactc gccccaatgg gaactgggaa tgggcgaagg agggctcagt aatggctggg
6721 gctttcattg caggattggc aggtgacatg ctcacgtcat ctgtgggctc ccttgtgaac
6781 gcaggggcaa acgccatcaa ccaaaagata gactttgaaa acaacaaaca actccagtct
6841 gcttcctttc agcatgataa agagatgctc caagcgcagg tgagggcaac caagcagctg
6901 caatctgaaa tgatagccct aaaacagggg gttttggccg caggcggctt ttcccccact
6961 gatgcagcaa ggggatccat tggtgcaccc atgacaaagg tgcttgactg gtctggcact
7021 cgatactggg cgcccaattc cacaaagaca actggctatt cgggacaatt tacctcttca
7081 cctgtgcata tgcctagccc aaatgctcca cgatcaaaac ctgcaaagcc taggtctcta
7141 gctccttcct cttcttctag cagtgtctat agtatgtata ctcaatctac acatttggca
7201 tctggctctt ctagtaatgc ttcttctgcc tccacaaaat tgacaaattt aagctctggc
7261 tcctctcaaa acagaacagc agagtgggta aatcaacaga gaagtcttag ccctttcatg
7321 agtggcgcac ttaacatctc acatgtcacg ccaccctcaa gtagggcttc cagttctggg
7381 acggtctcga ccgtgcccaa ggaagttttg gactcctgga cgtctgcgtt taacacacac
7441 agacagccgc tcttcgcaca cctcagagtg aggggggagt cacgtgttta g
//