Typing tool
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Typing tool
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Complete norovirus genomes
| OR793097 | GII.14 | |
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| GII.P7 |
ORF1: 1..5094
ORF2: 5075..6685
ORF3: 6685..7479
LOCUS OR793097 7479 bp RNA linear VRL 01-DEC-2025
DEFINITION Norovirus GII isolate SDJN201835 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION OR793097
VERSION OR793097.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7479)
AUTHORS Li,C., Song,S., Huang,X., Liu,X., Lv,H., Shen,Y., Wei,X., Zhang,W.
and Xu,Y.
TITLE Direct Submission
JOURNAL Submitted (10-NOV-2023) school of public health, Shandong
university, 44 Wenhua West Road, Jinan, Shandong 250000, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7479
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="SDJN201835"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="2018-01-21"
/note="genotype: GII.14[P7]"
gene 1..5094
/gene="ORF1"
CDS 1..5094
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WPB15487.1"
/translation="MKMASNDATAALGSQKSVNDSNNATPSNKEEVGTFSNIKVGFKK
MLGAVPKGTKAPSSDQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRHISRTTGFFKPYQSWNRKPLPTIDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKS
VKTLEDLKVALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDNASQTVNEVHSAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETQEVNEPEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDARSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGIKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSVLVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRG
KPPRPAILEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 1..1002
/gene="ORF1"
/product="p48"
mat_peptide 1003..2100
/gene="ORF1"
/product="NTPase"
mat_peptide 2101..2619
/gene="ORF1"
/product="p22"
mat_peptide 2620..3018
/gene="ORF1"
/product="VPg"
mat_peptide 3019..3561
/gene="ORF1"
/product="Pro"
mat_peptide 3562..5091
/gene="ORF1"
/product="RdRp"
gene 5075..6685
/gene="ORF2"
CDS 5075..6685
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WPB15488.1"
/translation="MKMASNDATPSDDGAAGLVPEINNEVMALEPVAGASIAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD
IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP
TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT
ILQSVSICNFKGTMQAKLNEEPRYQLQITNLDGSPIDPTDDMPAPLGTPDFQAMLYGV
ASQRSSRDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNVDD
QHPFRQWSLPSYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP
QEWIEHFYQEAAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMPTN
GYFRFEAWVNPFYTLAPVGTGSGRRRIQ"
gene 6685..7479
/gene="ORF3"
CDS 6685..7479
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WPB15489.1"
/translation="MAGAFLAGLAGDVVASSLGSLVGAGANAINQKVEYDFNRQLQEA
SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVKAPMTQILDWNG
SRYWAPNSMKTTGYSGTFASQGIRSSPHLSNQIQNTAKSTRPLPSISSSSSVYSSPST
APSQSTQSTTLSAGTGSSRPNTVSTKTSTLSRTSDWVRDQNEMLGPFMSGALQTAYVT
PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 atgaagatgg cgtctaacga cgctaccgct gcccttggca gtcaaaaatc tgtcaatgac
61 agtaataatg ccaccccttc taacaaagaa gaggttggta cattctccaa cattaaagtt
121 ggattcaaga aaatgctggg tgccgtaccc aaaggtacca aggcacccag cagtgatcaa
181 cattgcccca cagttaagat cgggcctaaa acattgacaa tcccccccga gcccccaaat
241 ggtgaagaca ccgtacaatt tgatgcaaaa tcagaaacta taatcgggct accggacttg
301 acaacggtgc aaaacgaaca cgaaaatact ccatacactg tccccccatt aagtgagagg
361 gagcacagac cggccactga accacttcct ggcacaatac tggagatgtg ggatggtgag
421 ttttaccatt actccgtgta cgtcagcgat ggcaaagctc tgggggtcca caaaccaccg
481 gcggctataa gtctcgcgac gatagaactc acccccatat cactctactg gagacccgtc
541 tacaccccca actacttggt ctccccagac acattaaagg gcctcgctgg tgagaagttt
601 ccctacacgg ccttcagtaa caactgttac aacttctgct gttgggtgct tgagctcaat
661 gacacgtggc ttaacagaag acacatctcc agaaccaccg gcttctttaa accataccag
721 tcttggaata ggaaacctct cccaactatt gatgatggaa agatcaaaaa ggtggccaac
781 gcgatcctct gtgcactcgg ttcgctgttc tcaaaaccaa tcaaggatct attaggtaaa
841 ctcaagccac tgaatctact acacttgctc gcgtcctgtg attggacgtt tgcgggtata
901 gtggagacag tcatcttaat ggcagagctt tttaatgtct tctggacccc gccagatgtc
961 tctaatttta tagcctccct gataggtgat tttgaattgc aaggtcctga agacttggct
1021 gtggagctcg ttcccgtggt tatgggtggc atagggatgg ttctcggctt caccgctgag
1081 aagataggcc gcatgctgtc gtccgctgca tcaacgttac gggcgtgcaa agacctaggg
1141 aactatgccc ttgatatact caaattggtt atgaaatggt tcttcccaaa gaaggaagag
1201 aaagctgaga tggagacctt gagggcgatt gaagatgctg tccttgatat ggaagctata
1261 gggaataacc acctcacaac ccttctcaag gacaaagaca gcctcacggc tttcatgaaa
1321 accctggatc tagaagagga gaaagcgagg aaactgtcca ctaaatcatc ttcaccagac
1381 atagtcggca ccattaacgc catactagct aggatagctg ctgctagatc cctactacat
1441 aaggccaaag aggagatgtt cagcaggatc agaccagtag tcgtcatgat ctcaggcaga
1501 cctggcattg ggaaaaccca catggcaagg cacttggcta agagcatcgc caacaccatg
1561 agtggcgatc agagggttgg actcgtccca cgtaatggtg tcgatcactg ggacgcctac
1621 aggggagaga gagtggtctt gtgggacgac tatggtatgg ggagccctgt caaagacgct
1681 ctgacactgc aagaattggc cgacacatgt ccagtcactt taaattgtga taggattgag
1741 aacaaaggga agatgtttga tagtgatgtt attataatca cgaccaacct agtcaacccc
1801 gcgcccctcg actatgtgaa cttcgaggcg tgttccagga gagttgactt cttggtctat
1861 gcagagtcac cagaaattga aaaggtcaag agagatttcc ctggccagcc tgacatgtgg
1921 aaagatcatt ttaagccaga cttttcccac attaagttaa ctctagcccc ccagggtgga
1981 tttgacaaga atggcaacac cccacacggc aagggcacta tgcggtccct aacccagggg
2041 tctctaaccg cgagggttgc aggccttgtc catgagagga aggacgagtt ccagctccaa
2101 ggaaatgacc ttcaaacata caactttgac accaacagag tctccgcatt tagaaaattg
2161 gccgcagaca acaagtatgg gatcatggag acgatgagag ttggcgcagc gctcaagagt
2221 gtgaagacct tagaagatct taaagttgca ttgagggatg taaaattcaa tgagtgtgaa
2281 ataatttaca agaattctaa gtaccgagtc tcttccaacg gtaaaggctc agtctctgtt
2341 gacaaagttg aagataatgc ttcccagact gtgaacgagg tgcattcagc actcctcaga
2401 ctcaggcagg cgagggccag atactacgtt agctgcttcc aagacctcgt ctacactctc
2461 atacaggttg ccggggcatc atttgttgtc agtaggatct ccagaaggtt ctgctgggaa
2521 aggtgggtca aaccgaccga gacacaggag gtgaatgagc ccgaaaagga agtggcccaa
2581 ggcagatggg aaattgaacc caaggacaca gaaccagaag gcaagaaggg taaaaacaag
2641 aaaggaaggg gcaagaaaca cacagccttc tctagcaaag gtctgagtga tgaagagtat
2701 gacgagttca agaggatcag ggaagaaaga aatggaaagt actccattga ggaatacctg
2761 caggaccgtg accgctatta tgaagaagta gcagttgctc gggcaacaga ggaggacttc
2821 tgtgaagagg aagaggctaa gataagacaa agaatcttcc gcccgacaag gaaacagagg
2881 aaggaggaaa ggggcgtgct tggtttggtc actggctcag acatcagaaa gagaagacca
2941 gacgatttcc aaccaaaagg caatctatgg gcagatgacg ccagaagtgt ggattacaat
3001 gagaggcttg attttgaagc acccccgagt gtctggtcaa gaatagttcc attaggcact
3061 ggttggggtt tttgggtttc atccaacctt ctgatcacaa cgacacacgt cctgcctaaa
3121 gggattaagg agctctttgg agttgaaatc aaacaaatcc aaattcataa gtctggagag
3181 ttttgcaggt ttagattccc aagacctatc aggccagatg tcacagggct cgtgctggag
3241 gagggcgccc cagagggcac tgtctgttct gtactcgtga aaagacccac gggtgaaatg
3301 atcccccttg cagtgaggat gggtacacac gcatccatga aaatacaggg caggactgtt
3361 ggtggccaga tgggaatgct ccttacagga gcaaacgcaa agaacatgga ccttggcacc
3421 ggccccggtg actgcggctg cccctacatc tacaagcgtg gcaacgacat tgttgttgcg
3481 ggcgtccaca ccgcagcagc ccggggaggc aacactgtaa tatgtgccac ccaagggcaa
3541 gatggggaag cagtccttga gggaaatgag gaccttggca cctactgtgg cgccccaatt
3601 ttgggccctg gcaaggcgcc taaactcagt acgaagacca agttttggcg ctcatcacca
3661 gatgccctgc cacctggcac atatgaacct gcttacctag gaggcaaaga ccctagagtg
3721 gaaaaaggtc catccctgca gcaagtcatg agagaccagt tgaggccctt cacagaaccc
3781 agaggcaaac cgcctagacc tgcaatttta gaggaagcca aaaagacagt gatgaatgtt
3841 ctagagcaaa ccattgaccc cgccaagcca tggtcctatt cgcaggcatg tgcctcattg
3901 gacaaaacca cctctagtgg tagtccccac catgttaaga agaatgacca ctggaatggg
3961 gagtccttca ctggtcccct tgcagaccag gcttctaaag ccaacctcat gtatgagcag
4021 gctaaacatg tgcagcccgt gtatacggct gcgcttaaag atgagcttgt taagactgac
4081 aagatctaca agaagataaa gaaaaggctc ctatgggggt cagaccttgg cacaatgatc
4141 aggtgcgcca gggcttttgg cggtcttatg gacagcatga aggcaagttg tatagctctt
4201 ccttgcaggg taggaatgaa catgaatgaa gatggcccca tcatatttga caaacactct
4261 aagtacaggt atcactacga tgctgattat tctaggtggg actcaaccca acaaaggagc
4321 atcctctctg ccgccatgga agtgatggtg cggttttctg ctgaaccaga attggcacaa
4381 gtggttgcag aggacctttt ggcacctagc cagcttgatg tcggcgactt tgtcatctca
4441 gtccaggaag gcctgccatc aggagtccca tgcacatcac aatggaattc aatagcacac
4501 tggattctca ctttgagtgc aatggcagaa gtgtcaggcc tctcaccaga tgttatccaa
4561 gctcactctt gtttttcatt ttatggggac gacgagatcg tcagcactga tatcaacctc
4621 gaccccatga agttaacaca aaaactcagg gagtatggcc tggttcccac ccggcctgac
4681 aaaactgaag gtcccctcgt cataactgaa gacctcaccg gcctgacatt cctccgtagg
4741 tcgattgctc gggatccagc tggctggttt ggaaaactag accaggattc aatcctcagg
4801 caactgtact ggacaagggg gcctaaccat gagaacccgt acgagagcat ggttcctcat
4861 tcccagcggg ccacacaact catggccctt cttggcgagg cctcgctgca cggtcctcag
4921 ttttacaaga aagtcagcaa aatggtcatc aatgaaatta agagtggtgg tctggagttt
4981 tacgtgccca gacaagaggc catgttcaga tggatgagat tctctgacct cagcacgtgg
5041 gagggcgatc gcaatcttgc tcccgaaggt gtgaatgaag atggcgtcga atgacgctac
5101 tccatctgat gatggtgcag ccggcctcgt accagagatc aacaatgagg ttatggctct
5161 tgaacccgtc gctggggcct ccattgcagc ccccgtagtc ggtcaacaga atataattga
5221 tccctggatt agaaacaatt ttgtacaagc ccctgctggt gaatttacag tttcccctag
5281 aaactctcct ggagaacttc tacttgattt ggaattgggt cctgaactca acccctatct
5341 tgcacatttg gctaggatgt ataatgggca cgcaggagga atggaagtgc agatagtact
5401 ggctgggaat gcgttcacag ctggtaagat cctatttgcc gccatcccac ctagcttccc
5461 ttatgaaaat ttgtcacccg cccaattaac tatgtgcccc catgtgatag tggatgtgag
5521 acaattagag ccagtgcttt tgccaatgcc agatataaga aatgttttct atcattataa
5581 tcagaataac agtcccaaac tcaggcttgt agctatgctc tatactcctc tgagggctaa
5641 caattcaggt gatgatgtgt tcacggtgtc ttgccgcgtt ttaacgcgcc cttctccaga
5701 tttccagttc actttcctgg tcccacctac agttgagtct aaaactaaga atttcaccct
5761 ccccgttctc agagtttcag agatgacaaa ttcaaggttc cccgttgtct tggaccaaat
5821 gtacacaagc aggaatgaaa acattattgt ccaaccccaa aacggcagat gcacaactga
5881 tggtgagctg cttggtacca ctattttaca atctgtgtct atttgcaact tcaaaggaac
5941 aatgcaggca aagctgaatg aagagccacg ataccaattg caaatcacca acttggatgg
6001 ttcacccata gatccaacag atgatatgcc tgcccctctt ggcacaccag acttccaggc
6061 catgttatat ggtgttgcaa gccaacgctc ttccagagac aatgccacca gggcacatga
6121 tgcacagatt gataccgcgg gtgacacgtt cgccccgaag attggccagg ttcgatttaa
6181 atcaagctcc aatgattttg atctacatga ccctacaaaa ttcacaccta ttggtgtcaa
6241 tgtggatgac caacaccctt ttagacagtg gtccctgcca agctacggtg gtcaccttgc
6301 cctgaacaat catttagccc cagctgtgac accactcttc cctggcgagc aaatcttgtt
6361 ctttaggtca tacattccaa gcgccggagg ccacacagac ggtgctatgg actgtttgct
6421 gccccaagag tggatagagc acttctacca ggaggcggct ccttcccaat ctgacatcgc
6481 actggtgagg ttcatcaacc ctgacacagg aagagtgctc tttgaagcta aattgcacaa
6541 acaaggtttc ctcacaattg cagcatctgg agaccaccct attgtgatgc ccactaatgg
6601 ttactttagg tttgaagctt gggtcaaccc tttctatact ctcgcccccg tgggaactgg
6661 gtctgggcgc aggaggattc aataatggct ggagctttcc ttgcaggctt ggcaggtgac
6721 gttgtggctt ccagcttggg ctcacttgtg ggtgctggag ccaacgccat caaccaaaaa
6781 gtggagtatg acttcaacag gcagctccag gaggcatctt ttagacatga taaggatatg
6841 ctcaaagccc aggttgcagc aacagcaggc cttcaacagg ctatgataga catcaagcgg
6901 gaggcattga ccgcaggcgg cttttccccc gctgatgctg caagaggtgc agttaaagca
6961 cctatgacgc agatccttga ttggaatggt tctagatact gggctccaaa ctccatgaag
7021 acaactggct attcaggtac atttgcttcc caaggcatta gaagttcccc ccatctgtct
7081 aatcaaattc aaaatactgc taaatctact agacctttac cttctatatc tagttcttct
7141 agtgtataca gttctccttc tactgccccc tcacaatcaa cacaatcaac aacgctgtct
7201 gcagggacag ggtcctccag acctaacact gtgtccacaa agacttccac attgtcgagg
7261 acaagtgatt gggtcagaga tcaaaatgag atgcttggcc cgttcatgag tggtgcactc
7321 caaactgctt atgtcacacc accatcgagt agggcctcat cacaagggac agtctcgacc
7381 gtacccaagg ctgttttgga ctcctggact cccatgttta acactcacag gcagcctctc
7441 ttcgcccact tgcgtaggcg aggggagtca cagatttag
//