Typing tool
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Typing tool
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Complete norovirus genomes
| OR793084 | GII.17 | |
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| GII.P17 |
ORF1: 1..5109
ORF2: 5090..6712
ORF3: 6712..7491
LOCUS OR793084 7491 bp RNA linear VRL 01-DEC-2025
DEFINITION Norovirus GII isolate SDJN201714 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION OR793084
VERSION OR793084.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7491)
AUTHORS Li,C., Song,S., Huang,X., Liu,X., Lv,H., Shen,Y., Wei,X., Zhang,W.
and Xu,Y.
TITLE Direct Submission
JOURNAL Submitted (10-NOV-2023) school of public health, Shandong
university, 44 Wenhua West Road, Jinan, Shandong 250000, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7491
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="SDJN201714"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="2017-05-26"
/note="genotype: GII.17[P17]"
gene 1..5109
/gene="ORF1"
CDS 1..5109
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WPB15448.1"
/translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR
SKQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVV
QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRKMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI
IGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK
LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGPDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV
KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQNNNELVGALH
HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEGGDEPEDR
GGCPKPRDEDDLIIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYMYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP
ILGPGSAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGRIKKRLLWG
SDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVVSEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 1..999
/gene="ORF1"
/product="p48"
mat_peptide 1000..2097
/gene="ORF1"
/product="NTPase"
mat_peptide 2098..2634
/gene="ORF1"
/product="p22"
mat_peptide 2635..3033
/gene="ORF1"
/product="VPg"
mat_peptide 3034..3576
/gene="ORF1"
/product="Pro"
mat_peptide 3577..5106
/gene="ORF1"
/product="RdRp"
gene 5090..6712
/gene="ORF2"
CDS 5090..6712
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WPB15449.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGTDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6712..7491
/gene="ORF3"
CDS 6712..7491
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WPB15450.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLTPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPYMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgttgctg gcaaaaacaa caacaacgac
61 aaggaaaaat cttcaagtga cagcttgttt gctaacatgt ctgtcacttt taagaaggcc
121 ctcggggcgc ggtctaaaca accgcccccg ggagaaacaa aacaaataca aaaaccacca
181 aggccaccga caccggaatt ggtgaagaga atacctccac ccccacccaa tggcgaggat
241 gaaccaggga tagtgtacaa ggtgggagag ggtgtgtctg ggctgcccga cctaacaact
301 gtggtacaac ctgacgcaca aaacacagct tatagtgttc ccccacttag ccagagagaa
361 gtcggcgaag ctaaagaacc gctgcctggc tccattctgg aaatgtggga tggtgagatc
421 taccactatg ggctgtatgt tgagcggggg catgtgctcg gagtacacaa accacctgct
481 gcaataagcc ttgccaaaat tgaaataaca ccgctgtctc tctactggag agtggtctac
541 actccccagt atttgataga tccaggaact cttaagaact tgagtggaga gactttccca
601 tacacggcct ttgacaacaa ctgttatgcc ttctgttgtt gggtcctaga cctcaacgac
661 tcctggctta gcaggaaaat gatccaaaga acaactggat tcttcaaacc ttatcaggat
721 tggaacagga aacccttacc aaccatggat gaaccgaaaa tcaagaaggc cgcgaatgct
781 gtcctatgcg ctctctcctc actcttcact agacccatta aggacatcat tggaaagctt
841 agaccactga acattcttaa tatactggca acctgcgatt ggacttttgc aggcatagtg
901 gaatccttga tccttcttgc tgaactcttt ggggtgttct ggacaccccc agatgtgtct
961 gcgatgattg ctcccttact cggtgactac gagatgcaag gccccgaaga cctggccgtg
1021 gaacttgtgc ccgtggtgat gggaggaata ggtttggtgt taggattcac caaagaaaag
1081 atcggcaaga tgctttcatc agctgcgacc acacttaggg cctgcaagga tctaggatct
1141 tatggattgg agatactcaa attggtcatg aagtggttct tccccaagaa ggaggaggct
1201 aacgaactag ccatggtgag ggccattgag gatgcagtcc tggatttgga ggcaatagaa
1261 aacaatcaca tgaccaccct tctcaaggat aaagacagcc tggccacata catgaggact
1321 cttgacttgg aagaagagaa agcaaggaaa ctgtcaacca aatcggcgtc acctgacatc
1381 gtgggtacaa taaacgcatt attggctagg atagcagccg ccaggtcact ggtccacaag
1441 gctaaggagg agctctcgag cagacagaga cctgttgttg taatgatatc aggtagacca
1501 ggtataggaa agacccatct ggccagagag ctagccaaga aagttgcgtc aacactgtca
1561 ggcgaccaaa ggattggact ggtacctaga aatggcgtcg accattggga cgcctataag
1621 ggagaaaggg tggttctgtg ggatgattat ggtatgagca accctataca ggacgcactg
1681 aggctccaag agttggctga cacctgtcct ctgaccctaa attgtgatag gattgaaaac
1741 aaaggaaaag tgttcgacag tgatgccata attataacaa ccaaccttgc aaacccagca
1801 ccactagact atgtcaactt tgaggcctgc tctagacgca tagacttctt ggtgtatgca
1861 gacgcacctg atattgagaa ggctaagcgt gacttccctg gccaaccaga tatgtggaaa
1921 gaccatttca gaccagactt ctcacacatt aaacttcagc tggcaccaca gggaggtttt
1981 gacaaaaatg gcaacacccc acatggcaaa ggtgtggtga agtccctgac gattggttct
2041 ctgatcgcca gggcctccgg cttgctccat gagagaatgg atgaattcga gctccaaggc
2101 cctgacctgc caaccttcaa ttttgaccgc aacaaagtcg ccgccttcag acaattagca
2161 gctgaaaaca aatatggtct tatggacaca ctgagggtcg gcaaccaact gaaaagtgtt
2221 aagaccctgg atgagctgaa gcaggccata aagaacatca gtatcaagaa gtgtcagata
2281 gtgtataatg gatgcaccta taccatggaa tctgatggga gaggcaaggt tgtggttgaa
2341 aaggtacaaa acgcaacagt tcaaaacaac aatgaacttg taggggcgct ccaccacctg
2401 aggtctgcaa ggataagata ctatgttaaa tgtttccaag aagccattta ctctctactc
2461 caaattgctg gtgcagcctt cgtcacctca cgcatcgtga ggcgcatgaa catatcaaac
2521 ctctggtcga agccacccat cgaggggggt gatgagcctg aagacagagg aggatgcccc
2581 aagcccaggg atgaagatga cctcattatt gactctagag acattaaagt ggaagggaag
2641 aagggcaaga acaagtctgg ccggggcaag aaacacacag ccttctcttc caagggcctc
2701 agtgatgaag agtacgatga gtacaagaga atcagagagg agaggaatgg caaatactca
2761 atagaggaat acctccaaga tagggacaga tactatgaag agcttgccat tgctaaggcc
2821 actgaggagg acttctgtga ggaggaggag atcaaaatcc gccagagaat cttccgaccc
2881 accaggaagc agcggaaaga ggaaagggcc acgcttgggc ttgtcacagg atcggaaatc
2941 agaaagagga atccagatga ctttaaacca aaaggaaaat tgtgggctga tgacaacagg
3001 agcgtggatt acaatgagag gatagatttt gaggctcccc cgagtgtttg gtctaggata
3061 gtcaactttg gcacaggctg gggattctgg gtttctccaa gtctctttat aacttcaaca
3121 cacgtcatac caaaaggaat cactgaggcc tttggagtgc ccataaacca aatccaaatt
3181 cataaatctg gagaattttg ccgcttgcgg tttccaaagc caattagacc agacgtgagt
3241 gggatgatct tggaagaggg cgcccctgaa ggcactgttg tgtctattct catcaaaagg
3301 acaacagggg agctgatgcc tcttgcagtc agaatgggga ctcatgccac aatgaaaatc
3361 caaggtagga cggtgggtgg tcagatgggt atgcttctca ctggctcaaa cgctaaaagc
3421 atggatctag gcacaacgcc aggtgactgc ggatgtccat acatgtacaa aaggggcaat
3481 gaccttgtgg tcattggggt gcacactgca gcagcccgtg gaggcaacac ggtcatatgt
3541 gccacacagg gaagtgaagg tgaagccact cttgaaggag gtgacaacaa gggaacctat
3601 tgtggagccc ccattttggg acctggcagt gcaccaaaat tgagcacaaa gacaaaattc
3661 tggagatcct ctaacgcacc gcttccccca ggtacttatg aaccagcata ccttggtggg
3721 agagacccgc gcgtgaaggg aggcccatct ctgcaacaag ttatgagaga ccaacttaaa
3781 ccttttacag agcccagagg gaagccacca aacccaaatg tcttagagtc agcaaagaaa
3841 actatcatca atgttctgga acaaaccatt gacccccctc aaaaatggtc atacgcccaa
3901 gcttgtgcat ccctcgacaa gacaacctcc agtgggtacc cgcaccacgt ccggaagaat
3961 gactattgga gtggtgaatc cttcacagga aaacttgcag atcaggcttc aaaagcaaat
4021 ctcatgtatg aggaaggcaa gcacatgcaa ccagtttaca ccgcagcact caaagacgag
4081 ctcgtgaaaa ctgacaaaat ttatggcaga atcaagaaaa gactcctgtg gggttctgac
4141 ctctccacaa tgattcggtg cgccagagca tttggtggtc tcatggatga attcaaagca
4201 aattgcatta cactccctat cagagttggt atgaatatga atgaagatgg tcccataata
4261 tttgagaaac actccaggta caggtaccac tatgatgctg attactcccg ctgggactcc
4321 acgcaacagc gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag
4381 ccacagctgg cacaaatagt ggcagaggac ctgctgtcac caagtgtggt tgatgtgggc
4441 gacttcaaaa tcgctatcaa tgaaggccta ccatctggcg tgccttgcac ctcacaatgg
4501 aattctattg cccactggtt acttaccttg tgtgcccttt ctgaagtgac aggattaggc
4561 cctgacatca tacaagctaa ctccatgtac tctttctatg gtgatgatga gattgtgagc
4621 acagacataa aattggaccc agagaaattg accgcaaagc tcaaagaata tggccttaaa
4681 cccactcggc ccgacaaaac tgaggggccg ttggtggtta gtgaggacct gaatgggttg
4741 actttcctcc gccgaacagt cacccgtgat ccagcaggtt ggtttggaaa gttggaccaa
4801 aactccatcc tcaggcagtt gtactggaca agaggaccca accatgaaga ccccagtgag
4861 accatgatac cacacgcaca aagacctgtg cagctcatgg cactactagg agaatcctcc
4921 ctacatggac cctcatttta cagcaaggtt agcaaattag tcatatctga acttaaagag
4981 ggaggaatgg atttttatgt gcccagacaa gagtcaatgt tcagatggat gaggttctca
5041 gatctaagca catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc
5101 gtcgaatgac gccgctccat ctaatgatgg tgctgctggt ctcgtaccag agggcaacaa
5161 cgagaccctt cccctagaac cagttgcggg cgcagctata gccgcacccg tcactggcca
5221 aaataacata attgacccct ggattagaac aaattttgtg caagcaccaa atggagagtt
5281 cacagtgtca cccagaaact ctcctggaga aattttatta aacttagagt taggtcctga
5341 tttgaaccct tatttggctc atttgtcaag gatgtacaat gggtatgctg gtggagtgga
5401 agttcaggtt ctcctggcag ggaacgcgtt cactgccgga aagatcctct tcgccgccgt
5461 cccgccaaat ttcccagtgg aattcttaag cccagcccag atcacaatgc tcccacattt
5521 aatagtagat gttaggactc ttgaaccaat tatgatccca ctccctgatg ttaggaatac
5581 attctttcat tatagtaacc agcctaatag ccgcatgaga ttagtggcta tgctctatac
5641 cccactcaga tctaatggct caggtgatga tgtctttact gtctcttgca gggttttgac
5701 taggcctact cctgattttg agttcactta tttagtgcca ccttctgttg aatctaaaac
5761 taagcctttt tccttaccta ttttaaccct ttctgagctc acaaattcga ggttcccagt
5821 ccccatcgat tcgcttttca ccgcccagaa taatgtgttg caggtgcagt gtcaaaatgg
5881 caggtgtaca cttgatggtg agttacaagg cacaacccag ttgctcccat ctggcatctg
5941 tgcattcaga ggacgggtga cagcacaaat taaccaacgt gacaggtggc acatgcaact
6001 gcaaaacctc aatggtacaa catatgaccc aactgatgat gtgccagccc cgctgggaac
6061 acctgatttc aagggcgtcg tgtttgggat ggtgagccaa agaaatgtgg gtactgacgc
6121 gcctggctca accagagccc aacaggcgtg ggtttcaacc tatagccccc aatttgtccc
6181 caaattaggt tctgtcaatc ttagaattag tgataatgat gatttccagt tccagccgac
6241 aaaattcaca ccagtgggcg tcaatgatga cgatgatggc cacccgttca gacaatggga
6301 actaccaaac tattcagggg agcttacctt gaatatgaat cttgcccccc cagttgctcc
6361 aaattttcct ggtgaacaat tgttattctt cagatctttc gtgccatgct caggaggtta
6421 caaccaaggt attatagatt gtcttattcc tcaagaatgg atccaacact tctatcagga
6481 atcagcaccc tctcagtcag acgtggccct aatcaggtat gttaaccccg atacgggacg
6541 tacactgttt gaagcaaaat tgcacagatc tggttacatt actgtggctc actctggaga
6601 ctatcctctt gttgttccgg ctaatggaca ctttagattt gattcttggg taaatcagtt
6661 ttactcactc gccccaatgg gaactgggaa tgggcgaagg agggctcagt aatggctggg
6721 gctttcattg caggattggc aggcgacatg ctcacgtcat ctgtgggctc ccttgtgaac
6781 gcaggggcaa acgctatcaa ccaaaagata gactttgaaa acaataaaca actccagtct
6841 gcttcctttc agcatgataa agagatgctc caagcgcagg tgagggcaac caagcagctg
6901 caatctgaaa tgatagccct aaaacagggg gttttggccg caggcggctt ttcccccact
6961 gatgcagcaa ggggatccat tggtgcaccc atgacaaagg tgcttgactg gtctggcact
7021 cgatactggg cgcccaattc cacaaagaca actggttatt cgggacaatt cacctcttca
7081 cctgtgcata tgtctagccc aaatgctcca caatcaaaac ctgcaaagcc taggtctcta
7141 actccttctt cttcttctag cagtgtctac agtatgtata ctcaatctac tcatttaaca
7201 tctggctctt ctagtaatgc ttcttctgcc tctacaaaat tgacaaattt aagctctggc
7261 tcctctcaaa acagaacagc agagtgggta aatcaacaga ggagtcttag cccttacatg
7321 agtggcgcac ttaacatctc acatgtcacg ccaccctcaa gtagggcttc cagttctggg
7381 acggtctcga ccgtgcccaa ggaagttttg gactcctgga cgtctgcgtt taacacacac
7441 agacagccgc tcttcgcaca cctcagagtg aggggggagt cacgtgttta g
//