Typing tool
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Typing tool
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Complete norovirus genomes
| OL336388 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5051
ORF2: 5032..6654
ORF3: 6654..7416
LOCUS OL336388 7416 bp RNA linear VRL 19-NOV-2021
DEFINITION Norovirus GII isolate 21161049 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION OL336388
VERSION OL336388.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7416)
AUTHORS Li,W., Yan,H., Shen,L., Liu,B., Tian,Y., Wang,Y., Jia,L., Gao,Z.
and Wang,Q.
TITLE Emergence of GII.4[P16] Noroviruses Associated Gastroenteritis in
Beijing, China, 2019-2021
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7416)
AUTHORS Li,W., Yan,H., Shen,L., Liu,B., Tian,Y., Wang,Y., Jia,L., Gao,Z.
and Wang,Q.
TITLE Direct Submission
JOURNAL Submitted (02-NOV-2021) Institute for Infectious Disease and
Endemic Disease Control, Beijing Center for Disease Prevention and
Control, Dongcheng District, No. 16 Hepingli Middle Street,
Beijing, Beijing 100013, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7416
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="21161049"
/isolation_source="stool specimen"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="May-2021"
/note="genotype: GII.P16-GII.4"
gene <1..5051
/gene="ORF1"
CDS <1..5051
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UEA14133.1"
/translation="NDKEKSSGEGLFTNMSSTLKKALGARPKQPAPRDEPQKPPRPPT
PELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFSVPPLSLRE
NREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVELTPLSLYWRV
VYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFR
PYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLNILNILATCDW
TFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGL
VLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRAIE
DAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSASPDIVGTINALL
ARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKVASTLTGDQRVG
LIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCDRIENKGKV
FDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKDA
FKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERMDEFELQG
PTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELKQAIRNVTIKRC
RIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKHARIRYYVKCVQEAV
YSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKSEDDEFVISSKDIK
EEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEE
LAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRRRNPDDFKPKG
KLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVIPAGITEA
FGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLIKRPTGELMPL
AARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGNDYIVIG
VHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLSTKTKFWRSS
NTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRGKPPRPSVLEAAKQTI
INVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGETFTGKLADQASKAN
LMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFGGLMDEM
KAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVR
FSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSITHWLLTLCALS
EVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDKTEGPLI
ISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPI
QLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGD
RNLAPNFVNEDGVE"
mat_peptide <1..947
/gene="ORF1"
/product="p48"
mat_peptide 948..2045
/gene="ORF1"
/product="NTPase"
mat_peptide 2046..2576
/gene="ORF1"
/product="p22"
mat_peptide 2577..2975
/gene="ORF1"
/product="VPg"
mat_peptide 2976..3518
/gene="ORF1"
/product="Pro"
mat_peptide 3519..5048
/gene="ORF1"
/product="RdRp"
gene 5032..6654
/gene="ORF2"
CDS 5032..6654
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UEA14134.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6654..>7416
/gene="ORF3"
CDS 6654..>7416
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UEA14135.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNSGHFSTPQPSGALPGRANLRDAVPARGPSTKSS
NSSAATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQ"
ORIGIN
1 acaacgacaa ggaaaaatct tcaggtgaag gcttattcac aaatatgtct tccactctaa
61 agaaagccct cggggctagg cccaaacagc ctgccccgag agacgaacca caaaagcccc
121 caagaccacc aactcccgag ttggtcaaga ggataccccc tcctccacct aatggcgagg
181 aagaagaaga accagtcatt aggtatgagg ttaagagtgg gatctctggc ctgcccgagc
241 tcacaacagt tccccaaccg gacgtggcca acacagcatt tagtgttcca ccactgagct
301 tgagggaaaa cagggaggcc aaggaaccgc taacaggggc aatactagag atgtgggatg
361 gagagatata ccactatggc ctgtacgtgg agaaaggctt agtgttgggt gtgcacaaac
421 cacctgcagc cataagcatg gcaagagtgg agttgacgcc gctgtcattg tactggcgtg
481 tggtgtacac tccccaatac ctcatctccc ctgaaactct caggaggctc aacggagagg
541 cgtttcctta caccgctttc gacaacaact gctatgcctt ttgctgctgg gtgttagacc
601 tcaatgactc atggcttagc aggaggatgg tgcaaagaac aacgggcttc ttcaggcctt
661 accaagagtg gaatagaaaa cccttgccta ctatggatga ctccaaaata aagaaggtag
721 caaatatatt cctatgctca ttgtccacat tattcaccag acccataaaa gacctcatag
781 gaaaaatcaa accactaaac atattgaaca tcttggcaac gtgtgactgg acgtttgccg
841 gaatagtgga gtctctgata ttgcttgccg agctcttcgg agttttctgg acacccccag
901 atgtgtctgc tatgatcgct cccttactcg gggactacga gttacaaggg ccagaagacc
961 tcgccgttga actcgtacct gtggtaatgg gagggattgg tttggtgttg ggattcacca
1021 aagagaaaat cggcaaaatg ttgtcctcag cagcatcaac actcagggct tgtaaagacc
1081 ttggtgccta tggcttagag atactcaaat tggtcatgaa gtggttcttc ccaaagaaag
1141 aggaggccaa tgagctagcc atggtgaggg ccatagaaga tgccgtgcta gatcttgagg
1201 caatagagaa taaccacatg acaaccctgt tgaaagacaa agacagctta gcaacataca
1261 tgaaaacact ggacatggag gaggagaaag ccagaaggtt atccacaaaa tctgcatccc
1321 ctgacatagt tgggacaatc aacgccctgc tggctcgaat agcagccgcc aggtcattgg
1381 tccacagggc caaggaagag ctgtctagca ggataagacc agtagttgtt atgatatctg
1441 gcaaaccagg aataggcaaa actcatctgg ccagggaggt ggcaagaaag gtggcatcca
1501 ctctcacagg ggaccaaaga gtcggactca taccaagaaa cggtgtggac cattgggatg
1561 catacaaagg tgagagagtc gtgctgtggg acgactatgg catgagtaac cccattcatg
1621 atgctctccg catacaagaa ttggctgata cgtgtcccct caccttaaat tgtgatagaa
1681 ttgaaaataa gggaaaagtt tttgacagtg aagtcataat aattacaaca aaccttgcca
1741 acccagcccc acttgattat gtcaactttg aggcctgttc caggagaatt gatttcctgg
1801 tgtacgctga ggcaccagaa gtagaaaagg caaaacggga ttttcctggt cagccagata
1861 tgtggaagga cgccttcaag ccggactttt cacacatcaa gctacagctt gcacctcagg
1921 gcggctttga caagaatggc aataccccac atgggaaagg agtgatgaag accctcacta
1981 ccggttctct gattgcccgt gcatcaggcc tactgcatga gaggatggat gaatttgaac
2041 tccaaggtcc cacaatcacc actttcaatt tcgaccggaa tagaatcaca gcattcagac
2101 aattggctgc agaaaacaag tatggactgg tggacaccat gaaagttggc aatcaactaa
2161 aaggagtgaa aaccatggaa gaactcaaac aagcaatcag aaatgtgacc atcaagaggt
2221 gccggatcat ctacggtggt tccacgtatg accttgaatc tgatggcaag ggcaaagttt
2281 tagtggaaaa ggtcaagaac acctctatac agaccaacaa cgagttggcc ggggccctgc
2341 accatcttaa acatgcccga atcagatact atgtcaaatg tgtgcaagaa gcagtctatt
2401 ccatcataca aattgccggc gctgcgtttg tcaccacacg cattgcacgc cgcatgaaca
2461 tacaagaact ctggtcgaaa ccacaattag accaaaatga atcagagact aaggaagagg
2521 cccccaagtc agaagatgac gagttcgtca tatcttctaa ggatatcaag gaggaaggaa
2581 agaagggcaa aaacaaaact ggccgtggca agaaacacac tgcattctcc agcaagggct
2641 tgagcgatga ggagtatgac gagtacaaga ggataagaga agagagaaac gggaagtact
2701 ctatagagga atatcttcaa gacagagaca ggtactatga ggagctcgcc attgccaagg
2761 ccacggaaga agacttctgt gaagaggagg aaatcaaaat ccgtcagaga attttccgtc
2821 ccaccaggaa acaaagaaag gaagagaggg ccacattagg gctggtaaca ggttcagaaa
2881 tcagaagaag aaaccctgat gatttcaaac ccaaagggaa gctgtgggcc gatgacaaca
2941 gaagtgttga ctacaatgag aaactggact ttgaggcccc cccaagcata tggtctagaa
3001 ttgtgagctt tggctctggc tggggcttct gggtatcacc aagcctgttc ataacatcaa
3061 cccatgttat ccctgcaggc ataacagaag catttggagt ccccatcaaa caaattcaga
3121 ttcacaaatc aggtgaattt tgccgattca gattcccaaa accaattaga ccagatgtga
3181 caggaatgat cttggaagaa ggtgcgcctg aaggcaccgt ggcaactgtg ctcatcaaac
3241 gccccaccgg agagctcatg cctcttgcag ccagaatggg aacacacgca accatgaaga
3301 ttcaaggccg catggttggc ggacagatgg gtatgttgct cactggatca aatgctaaag
3361 gaatggattt gggaacaact cctggtgact gtggctgccc ttacatctat aaaaggggca
3421 atgactatat agtcattggg gtacacactg cagcagcccg tggtggaaac accgtcatct
3481 gtgccacaca gggaagtgag ggtgaggcaa ctcttgaggg tggagatgac aaaggaacat
3541 actgtggggc acccattcta ggccctgggg gtgcaccaaa attgagcacc aaaaccaaat
3601 tttggaggtc atcgaacacg ccccttccac cagggacata tgagcctgcc tacctcggtg
3661 gccgtgaccc gcgtgttagg ggtgggccct ccttacagca ggtaatgaga gaccagttga
3721 agccattcac tgaacccagg ggcaaacctc caagaccaag tgttttggaa gcagccaaac
3781 aaaccattat caatgtcctc gaacaaaccc tggatcctcc acaaaaatgg acatacgcac
3841 aggcgtgtgc ctcacttgac aaaaccacct ccagcgggca tccacaccac gcccgaaaga
3901 atgaattctg gaatggtgag accttcactg gtaaattggc agaccaagca tcaaaagcaa
3961 acctaatgtt tgaggaaggg aaacacatga caccagtgta tacagcagca ctcaaggacg
4021 agctagtcaa gactgagaaa atctatggaa agatcaagaa gagactgctc tggggctctg
4081 acttgtccac catgatccgg tgcgctaggt catttggtgg gctcatggac gagatgaagg
4141 cacactgcat atcacttcca gtacgagttg gcatgaatat gaatgaagat ggcccaataa
4201 tatttgagaa acattccaga tacaaatacc actatgatgc agactactct cgctgggatt
4261 caacacaaca gagggcagta ttagcagcag ccttggaaat catggtcaga ttctctgcag
4321 aaccacaatt ggcacaaata gtcgctgagg atctactggc ccctagtgta gtagatgtag
4381 gagactttaa aatcacaata aatgaagggc tcccatctgg tgtgccatgc acttctcaat
4441 ggaactccat aacacactgg ctgctaactc tctgtgcctt gtctgaagtc accaaactgt
4501 cccctgacat tatacaagca aattccatgt tctcatttta cggtgatgac gagattgtca
4561 gcaccgacat aaaattggac cctgaacagt tgaccgccaa gttgaaggag tacggcctga
4621 aaccaactcg cccagacaag accgagggac ccctgatcat cagtgaagat ttgaacggac
4681 tcactttcct ccgaaggacg gtgactcgtg acccagctgg ctggtttgga aaactggacc
4741 aaagttcaat tttgaggcag atgtactgga ctagagggcc aaatcatgaa gaccccaatg
4801 agacaatgat accccactct cagagaccca tacagctcat ggcactgctt ggtgaagcct
4861 ctcttcacgg accctctttc tacagtagaa tcagtaaatt ggtcataact gaacttaaag
4921 aaggtgggat ggacttttac gtgccaaggc aggaacccat gtttaggtgg atgaggtttt
4981 ctgacttgag cacgtgggag ggcgatcgca atctggctcc caattttgtg aatgaagatg
5041 gcgtcgagtg acgccaaccc atctgatggg tccgcagcca acctcgtacc agaggtcaac
5101 aatgaggtta tggctttgga gcccgttgtt ggtgccgcta ttgcggcacc tgtagcgggc
5161 caacaaaatg taattgaccc ctggattaga aataattttg tacaagcccc tggtggggag
5221 ttcacagtat cccctagaaa tgctccaggt gagatactat ggagcgcgcc cctaggccct
5281 gacctaaatc cctacctatc ccatttagcc agaatgtaca atggttatgc aggtggtttt
5341 gaagtgcagg taattctcgc ggggaacgcg ttcaccgccg ggaagattat atttgcagca
5401 gtcccaccaa attttccaac tgaaggttta agccctagcc aggtcactat gttcccccac
5461 ataatagtag atgttagaca attggaacct gtgctgatcc ccttacctga tgttaggaat
5521 aatttctatc attacaatca gtcaaatgat tccactatta agttgatagc aatgttgtac
5581 acaccactta gggctaataa tgctggggat gatgttttca cagtttcgtg ccgagttctc
5641 acgagaccat cccccgattt tgatttcata tttttagtac cacccacagt tgagtcaaga
5701 actaaaccat tctctgtccc agttttaact gttgaggaga tgaccaattc aagattcccc
5761 atccctttgg aaaagttgtt tacaggcccc agcagtgcat ttgtcgttca accacaaaac
5821 ggcagatgca caactgatgg cgtgcttcta ggcactaccc aactttctcc tgtcaacatc
5881 tgcaccttca gaggggatgt cactcacatc acaggtagtc acaactacac tatgaatttg
5941 gcttctcaaa attggaacaa ctatgatcca acagaagaaa tcccagcccc tctaggaact
6001 ccagattttg tggggaagat tcaaggcatg ctcacccaga ccacaaggac agatggttca
6061 acacgcggtc acaaagctac agtgtacact gggagcgccg actttgctcc aaaactgggt
6121 agagttcaat ttgaaactga cacaaaccat gattttgaag ccaatcaaaa cacaaagttc
6181 accccagtcg gtgtcatcca agatggtagc accacccatc gaaacgaacc ccagcagtgg
6241 gtgctcccaa gttactcagg cagaaatacc cacaatgtac atttggcccc cgctgtagcc
6301 cccacctttc cgggtgagca acttctcttc ttcagatcca ccatgcccgg atgcagcggg
6361 taccccaaca tggatttgga ctgtctgctc ccccaggaat gggtgcagta cttctaccaa
6421 gaggcagccc cagcacaatc tgatgtggct ctgctaagat ttgtgaatcc agacacaggt
6481 agggttttgt ttgagtgcaa gcttcacaaa tcaggctatg ttacagtggc tcacactggc
6541 caacatgatt tggttatccc ccccaatggt tactttaggt ttgattcctg ggtcaaccag
6601 ttctacacgc ttgcccccat gggaaatgga acggggcgta gacgtgcagt ataatggctg
6661 gagctttctt tgctggattg gcatctgatg tccttggctc tggacttggt tcccttatca
6721 atgctggggc tggggccatc aaccaaaagg ttgagtttga aaataacaga aaattgcaac
6781 aagcatcctt tcaatttagc agcaatttgc aacaggcttc ctttcaacat gataaagaga
6841 tgctccaagc acaaattgag gccaccaaaa agctacaaca ggaaatgatg agagttaagc
6901 aggcaatgct cctagagggt gggttctctg agacagatgc agcccgcggg gcaattaacg
6961 cccccatgac aaaggctttg gactggagcg ggacaaggta ctgggctcca gatgctagaa
7021 ttacaacata caattcaggc cacttttcca cccctcaacc atcgggggca ctgccaggaa
7081 gagctaatct tagggatgct gtccctgctc ggggaccctc caccaaatct tctaactctt
7141 ctgctgccac ttctgtgtac tcaaatcaaa ctacttcaac gagacttggt tctacagctg
7201 gttctggaac cagtgtctcg agcctcccgt cgactgcaag gactaggagc tgggttgagg
7261 atcaaaatag gaatttgtca cctttcatga ggggggccca caacatatca tttgtcaccc
7321 caccatctag cagatcctct agccaaggca cagtctcaac cgtgcctaaa gaaattttgg
7381 actcctggac tggcgctttc aacacgcgca ggcagc
//