Typing tool
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Typing tool
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Complete norovirus genomes
| MK907792 | GII.17 | |
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| GII.P25 |
ORF1: 1..805
ORF2: 786..2408
ORF3: 2408..3187
LOCUS MK907792 3241 bp RNA linear VRL 02-NOV-2019
DEFINITION Norovirus GII isolate G19_026 nonstructural polyprotein, RdRp
region, (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION MK907792
VERSION MK907792.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3241)
AUTHORS Strubbia,S., Phan,M.V., Schaeffer,J., Koopmans,M., Cotten,M. and Le
Guyader,S.
TITLE Optimisation of agnostic metagenomic approaches to characterise
human enteric viruses in sewage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3241)
AUTHORS Le Guyader,S. and Strubbia,S.
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3241
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G19_026"
/isolation_source="sewage"
/db_xref="taxon:122929"
/geo_loc_name="France: Nantes"
/collection_date="20-May-2014"
/note="genotype: GII.17-GII.P22"
gene <1..805
/gene="ORF1"
CDS <1..805
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="QCO93075.1"
/translation="SRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLLAPSVVDV
GDFKITINEGLPSGVPCTSQWNSISHWLITLCAISEVSGLSPDVVQTNSCFSFYGDDE
IVSTDIKLDPMKLTNKLKEYGLIPTRPDKTEGPLIIKESLEGLTFLRRDVCRDPAGWY
GKLDQSSIMRQLYWTKGTNHDDPNETMIPHSQRPIQLMSLLGEAALHGPTFYKKVSKL
VITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..802
/gene="ORF1"
/product="RdRp"
gene 786..2408
/gene="ORF2"
CDS 786..2408
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QCO93076.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 2408..3187
/gene="ORF3"
CDS 2408..3187
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QCO93077.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKVDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSTYTQST
HLTSGSSSNASSASTKLINLSSGSPQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 ttccaggtgg gactcaaccc aacagaggca cattcttgga gctgcccttg aaataatggt
61 tagattttca gctgaacctg aattggcaca aatagtgtct gaagatctcc tagcccccag
121 tgtggtggac gttggcgact tcaaaatcac cataaatgaa ggattgccct ctggagtgcc
181 gtgtacatca cagtggaact caatttccca ctggctcata acactgtgtg ccatatcaga
241 agtttcaggg ctgtcgccag acgtagtgca aacaaactcc tgcttctcct tctacgggga
301 tgatgagata gtcagcactg acatcaagtt agaccccatg aagctgacca acaagttgaa
361 agaatatggg ttgattccaa caaggccaga caagacagag gggccgctca taattaaaga
421 gagtcttgag ggcctaactt tcctaaggag ggacgtgtgt cgagacccag ctggttggta
481 tgggaaactt gaccaatctt caatcatgag acaactgtat tggactaagg ggaccaacca
541 tgatgatccc aatgagacaa tgattccaca ctctcagaga cccatacaat taatgtcact
601 gctaggggag gcagcactgc atggtccaac tttttacaag aaagtcagca aattggtcat
661 cactgagctc aaagagggtg ggatggattt ctatgtacca agacaggaac ctatgttcag
721 atggatgaga ttctcagacc tcagtacttg ggagggcgat cgcaatcttg ctcccgaagg
781 tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgct gctggtctcg
841 taccagaggg caacaacgag acccttcccc tagaaccagt tgcgggcgca gctatagccg
901 cacccgtcac tggccaaaat aacataattg acccctggat tagaacaaat tttgtgcaag
961 caccaaatgg agagtttaca gtgtcaccca gaaactctcc tggagaaatt ttattaaact
1021 tagagttggg ccctgatttg aacccttatt tggctcattt gtcaaggatg tacaatgggt
1081 atgctggtgg agtggaagtt caggttctcc tggcagggaa cgcgttcact gccggaaaga
1141 tcctcttcgc cgccgtcccg ccaaattttc cagtggaatt cttaagccca gcccagatca
1201 caatgctccc tcatttaata gtagatgtca ggactcttga accaattatg atcccacttc
1261 ctgatgttag gaatacattc ttccattata gtaaccagcc taacagccgc atgagattag
1321 tggctatgct ctatacccca ctcaggtcta atggctcagg tgatgatgtc tttactgtct
1381 cttgcagggt tttgactagg cctactcctg attttgagtt cacttattta gtgccacctt
1441 ctgttgaatc taaaactaag cctttttctt tacctatttt aaccctttct gagctcacaa
1501 attcgaggtt cccagtcccc atcgattcgc ttttcaccgc ccagaataat gtgttgcagg
1561 tgcagtgtca aaatggcagg tgtacacttg atggtgagtt acaaggcaca acccagttgc
1621 tcccatctgg catctgtgca ttcagaggac gggtgacagc acaaattaac caacgtgaca
1681 ggtggcacat gcaactgcaa aacctcaatg gtacaacata tgacccaact gatgatgtgc
1741 cagccccgct gggtacacct gactttaagg gcgtcgtgtt tgggatggta agccaaagaa
1801 atgtgggtaa tgatgcgcct ggctcaacca gagcccaaca ggcgtgggtt tcaacctata
1861 gcccccaatt tgtccccaaa ttaggttctg tcaatcttag aattagtgat aatgatgatt
1921 tccaattcca gccgacaaaa ttcacaccag tgggcgtcaa tgatgacgat gatggccacc
1981 cgttcagaca atgggaacta ccaaactatt caggggagct taccttgaat atgaatcttg
2041 cccccccagt tgctccaaat tttcctggtg aacaattgtt attcttcaga tctttcgtgc
2101 catgctcagg aggctacaac caaggtatta tagattgtct tattccccaa gaatggatcc
2161 aacacttcta tcaggaatca gcaccctccc agtcagatgt ggccctaatc aggtatgtca
2221 accctgatac gggacgtaca ctgtttgaag caaaattgca cagatctggt tacattactg
2281 tggctcactc tggagactat cctcttgttg ttccggctaa tggacacttt agatttgatt
2341 cttgggtaaa tcagttttac tcactcgccc caatgggaac tgggaatggg cgaaggaggg
2401 ctcagtaatg gctggggctt tcattgcagg attggcaggc gacatgctca cgtcatctgt
2461 gggctccctt gtgaacgcag gggcaaacgc catcaaccaa aaggtggact ttgaaaacaa
2521 caaacaactc cagtctgctt cctttcagca tgataaagag atgctccaag cgcaggtgaa
2581 ggcaaccaag cagctgcaat ctgaaatgat agccctaaaa cagggggttt tggccgcagg
2641 cggcttttcc cccactgatg cagcaagggg atccattggt gcacccatga caaaggtgct
2701 tgactggtct ggcactcgat actgggcacc caactccaca aagacaactg gttattcggg
2761 acaattcacc tcttcacctg tgcacatgtc tagtccaaat gctccacaat caaaacctgc
2821 aaagcctaga tctctagctc cttcctcttc ttctagcagt gtctatagca cgtatactca
2881 atctactcat ttaacatctg gctcttctag taatgcttct tctgcctcta caaaattgat
2941 aaacttaagc tctggctccc ctcaaaacag aacagcagag tgggtaaatc aacagagaag
3001 tcttagccct ttcatgagtg gcgcacttaa catctcacat gtcacgccac cctcaagtag
3061 ggcttccagt tctgggacgg tctcgaccgt gcccaaggaa gttttggact cctggacgtc
3121 tgcgtttaac acacacagac agccgctctt cgcacacctc agagtgaggg gggagtcacg
3181 tgtttagtga aaagaaataa ttggctataa tgtgatttct ttctaaattt ggctaatttg
3241 t
//