Typing tool
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Typing tool
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Complete norovirus genomes
| MH279833 | GII.7 | |
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| GII.P7 |
ORF1: 1..827
ORF2: 808..2430
ORF3: 2430..3203
LOCUS MH279833 3273 bp RNA linear VRL 01-MAY-2019
DEFINITION Norovirus GII strain GII.P7_GII.7/PA154/2008/ITA nonstructural
polyprotein, RdRp region, (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION MH279833
VERSION MH279833.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3273)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Analysis of GII.P7_GII.6 Noroviruses reveals non-linear evolution
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3273)
AUTHORS Martella,V., Diakoudi,G., Lanave,G., Buonavoglia,C. and Catella,C.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2018) Medicina Veterinaria, Universita degli
studi di Bari, Str.da provinciale per Casamassima KM3, Valenzano,
Bari 70010, Italia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3273
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="GII.P7_GII.7/PA154/2008/ITA"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Italy: Palermo"
/collection_date="19-Nov-2008"
gene <1..827
/gene="ORF1"
CDS <1..827
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AWT08258.1"
/translation="YHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLL
APSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCF
SFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIA
RDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQF
YKKVSKMVISEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..824
/gene="ORF1"
/product="RdRp"
gene 808..2430
/gene="ORF2"
CDS 808..2430
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AWT08259.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
gene 2430..3203
/gene="ORF3"
CDS 2430..3203
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="AWT08260.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPMQSAPYVNNQNRQLFKVDPPPPPSSGSSVSSVKTQ
STALSGTSGAGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMNGALQTTYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
3'UTR 3204..3273
ORIGIN
1 cataccacta tgatgcagac tattctaggt gggactcaac tcaacaaagg agcatccttt
61 ctgccgctat ggaagtgatg gtgcggttct ctgctgaacc agaattggca caagtggttg
121 cagaggacct tttggcacct agtcagcttg atgttggcga ttttgtcatc tcagtccagg
181 agggtctgcc atcaggagtc ccatgtacat cacaatggaa ttcaatagca cactggatcc
241 taactttgag tgcaatggca gaagtgtcag gtctctcacc agatgttgtc caagctcact
301 cctgtttttc attttatggg gatgatgaga tcgtcagtac tgatatcaac cttgacccca
361 tgaagttgac acagaaactc agggagtacg gtctagtccc cacccgacct gataaaactg
421 aaggtcccct cgtcataact gaagatctca ccggcctgac gttccttcgt aggtcgattg
481 ctcgggatcc agctggttgg tttggaaaat tggaccaaga ttcaatcctc aggcaattgt
541 actggacaag ggggcctaac catgagaacc cgtacgagag catggtccct cattctcagc
601 gggccacaca actcatggcc cttcttggtg aggcctcact gcatggtccc cagttttaca
661 agaaagttag caagatggtc atcagtgaga ttaagagtgg tggtctggag ttttacgtgc
721 ccagacaaga ggccatgttc aggtggatga gattctctga cctcagcaca tgggagggcg
781 atcgcaatct tgctcccgaa ggtgtgaatg aagatggcgt cgaatgacgc agctccatct
841 aatgatggtg cagcaggcct cgtaccagag atcaacaatg aggtcatgcc ccttgaaccc
901 gtggctggtg catcgctggc gacaccagtt gttgggcaac aaaatataat tgatccctgg
961 ataagaaata atttcgtgca agctcctgca ggtgagttca cagtttcccc tagaaattcc
1021 cctggtgaaa ttttgcttga tttggagttg ggaccagagt tgaaccccta tcttgctcat
1081 ctggcccgta tgtacaatgg acacgctggt ggcatggaag tgcaaattgt gttggctggg
1141 aacgcgttca cagctggcaa gatcatattt gctgccatcc ctccagggtt cccatatgaa
1201 aatttgtcac cttcacaaat tacaatgtgc cctcatgtta taattgatgt tagacaatta
1261 gaaccagtcc tattaccaat gccagatatc agaaataact tcttccatta caatcagggc
1321 aatgatccaa aattgaggtt ggtagctatg ctctacaccc ctttaagagc taataattct
1381 ggtgatgatg tgttcacagt ttcttgtagg gtcctcacaa aaccgtcacc tgattttgaa
1441 ttcacatttc tagttccccc cacggttgaa tccaaaacta agcagttcac attgcccatc
1501 ctcaaaatat cagagatgac caattcaaga ttcccagtgc cagttgaaat gatgtacaca
1561 gccaggaatg agaaccaagt tgtccagcca cagaatggta gggtcacact tgatggcgag
1621 ctgttaggca ccacaccctt gttggctgtc aacatctgta aattcaaggg agaggttata
1681 gctaagaatg gagatgtgag atcctatagg atggacatgg aaatcaccaa cactgatggc
1741 accccaattg accctacaga agacacacct ggtcccattg gttcacctga ttttcaaggt
1801 atactctttg gcgttgccag ccaacgcaac aagaatgagc aaaaccccgc cacgagagcc
1861 catgaagcca acattaacac tggtggggac caatatgccc ccaaattggc ccaagtgaaa
1921 ttcttctcag agtcccagga ttttgaggtg caccaaccca cagttttcac cccagtcggt
1981 gtggcaggcg acacttccca ccctttcaga cagtgggtcc tgcctcgata cggtggacat
2041 ctcaccaata acacccactt ggctccagca gtggcccctc tatttccagg tgagcagatt
2101 ctattcttca ggtcacaaat acctagctca ggcggccatg aattgggtta catggactgc
2161 cttgtcccac aagaatgggt ccaacacttc tatcaagaag ctgccacagc tcagtcagag
2221 gtggcactca taaggttcat caacccagac actggcagag tcctctttga ggccaagctg
2281 cacaagcaag gctttataac tgtggctcac actggtgata acccaattgt tatgccacca
2341 aatgggtact ttagatttga agcctgggtt aatcagtttt actcactcgc ccccgtggga
2401 actgggaatg ggcgcaggag gatccaataa tggctagtgc tttctttgca aatttggcag
2461 gaggtgttgc ctccaatgga attagttcac tcataaatgc tggggctaat gctattaacc
2521 aaaaggttga gtttgattat aataaacaac tccaaaatgc atccttctcc catgataagg
2581 agatgctcca agcccaaatt gaagccacta aacgtctgca acaggagatg attgacataa
2641 aacaaggggt gttgacagcc gcgggattct ctcctacaga tgccgcgagg ggttctgtcg
2701 gcgcgccaat gacaaaatta gttgattgga gtggcactag atattgggca cctggtgcca
2761 tgaggacaac aggctattca gggactttta cccacttgcc ccctatgcag tctgctccat
2821 atgttaacaa tcaaaataga caacttttta aagtagatcc tcctcctccc ccttcgagtg
2881 gttcttctgt ctcttctgtc aaaacacaat caactgccct ctcaggcact tcaggagcgg
2941 gctcctcatc tcagtcaacc ttgtcgacca gaccgagtac aaggacatct gattgggtgc
3001 gtagccaaaa tgaaaggttg agccccttca tgaatggagc gttgcaaaca acgtatgtaa
3061 cgccaccatc cagcagggca tcgagtgtca gcacagtctc gaccgtgccg aaagaggttt
3121 tggactcctg gacgcctatg tttaacactc acaggcagcc actcttcgcc cacttgcgta
3181 ggcgagggga gtcacagatt tagtgaaaag attggttggg aaaatttgat tagtttgttc
3241 tacttttcta ctgttccttt aactctttct ttt
//