Typing tool

Complete norovirus genomes

MG571778  GII.6
 GII.P7

Length: 7,468 | 3 CDS

ORF1: 5..5098
ORF2: 5079..6722
ORF3: 6722..7468
LOCUS       MG571778                7468 bp    RNA     linear   ENV 20-JUN-2018
DEFINITION  MAG: Norovirus GII.6 clone V4B RNA-dependent RNA polymerase (RdRp)
            and capsid protein VP1 (VP1) genes, complete cds; and capsid
            protein VP2 (VP2) gene, partial cds.
ACCESSION   MG571778
VERSION     MG571778.1
DBLINK      BioProject: PRJNA418044
            BioSample: SAMN08013693, SAMN08013772
KEYWORDS    ENV; Metagenome Assembled Genome; MAG.
SOURCE      Norovirus GII.6 (gut metagenome)
  ORGANISM  Norovirus GII.6
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 7468)
  AUTHORS   Siqueira,J.D., Dominguez-Bello,M.G., Deng,X. and Delwart,E.
  TITLE     Uncontacted Amerindians fecal virome includes widely dispersed
            human pathogens
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7468)
  AUTHORS   Siqueira,J.D., Dominguez-Bello,M.G., Deng,X. and Delwart,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2017) Molecular Virology, Blood Systems Research
            Institute, 270 Masonic Avenue, San Francisco, CA 94118, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: Geneious v. R9
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7468
                     /organism="Norovirus GII.6"
                     /mol_type="genomic RNA"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:499193"
                     /clone="V4B"
                     /environmental_sample
                     /country="Venezuela"
                     /collection_date="2015"
                     /metagenome_source="gut metagenome"
                     /note="metagenomic"
     gene            5..5098
                     /gene="RdRp"
     CDS             5..5098
                     /gene="RdRp"
                     /codon_start=1
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="AWU65955.1"
                     /translation="MKMASNDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKK
                     MLGAVPKGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTT
                     VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
                     AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
                     LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
                     LLGKLKPLNLLHLLASCDWTFAGIVEAVILMAELFGIFWTPPDVSSFIASLIGDFELQ
                     GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
                     WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
                     KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
                     ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
                     ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
                     EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
                     TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIVETMRVGTALRS
                     VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVNKVEDQTSQTANEVGAAL
                     LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEK
                     EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
                     SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
                     SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
                     LITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
                     CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
                     CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENHGTYCGAPILGPG
                     KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
                     KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
                     ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
                     MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
                     QQRSILLAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
                     WNSIAHWILTLSAIAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
                     GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
                     ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
                     FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
     gene            5079..6722
                     /gene="VP1"
     CDS             5079..6722
                     /gene="VP1"
                     /codon_start=1
                     /product="capsid protein VP1"
                     /protein_id="AWU65956.1"
                     /translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
                     QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
                     MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
                     IRNRFFHYNQENTSRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
                     VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
                     LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
                     AIDFKGTVFGVASQRNTTGNTIGATRAHEVHIDTTNPRYTPKLGSVLMHSESTDFDDG
                     QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
                     YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
                     SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
     gene            6692..>7468
                     /gene="VP2"
     CDS             6722..>7468
                     /gene="VP2"
                     /codon_start=1
                     /product="capsid protein VP2"
                     /protein_id="AWU65957.1"
                     /translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
                     SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
                     TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST
                     HSTALTAGSSSSRTTSSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
                     SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAH"
ORIGIN      
        1 gtgaatgaag atggcgtcta acgacgctac cactgccttt ggcagccaaa actctgtcaa
       61 tgacagtatc aacaccgccc cttctaataa agaagaggtt ggtgcattct ccaacatcaa
      121 agttggtttt aagaagatgc tgggtgccgt ccccaagggg accaaagcac ccagtagtga
      181 tcagcactgc ccctcagtta agatcgggac caagacatta acagttcccc ctgagcctcc
      241 aaatggtgaa gacaccgtgc agtttgatgc gaagtcggaa actgtgcgcg ggttaccaga
      301 cttgacaacg gtgcagaatg aacatgaaaa cacaccatac actgtccccc cattgagtga
      361 aagggagcac agaccagcta ccgaaccgct tcctggcaca atactggaga tgtgggatgg
      421 tgaattctac cattactctg tgtacgtcag cggtggcaaa gccctagggg ttcacaaacc
      481 ccctgcagcg ataagcctcg cgacgataga gctcacaccc atatctctct attggagacc
      541 cgtttacacc cccaactatt tggtctgccc agacacgctg aagggccttg ctggtgagaa
      601 gttcccctac acggccttca gcaacaactg ttacaacttc tgttgctggg tgcttgagct
      661 caatgacaca tggcttagta ggagaagcat ctctagaacc accggcttct tcaaaccata
      721 ccaatcttgg aataggaaac cccttccaac cgttgatgat ggaaaaatca aaaaggtggc
      781 caacgcaatt ctctgtgcac ttgggtcact gttttcaaaa ccaatcaagg acctattggg
      841 caagcttaaa ccattgaact tgctgcactt gctcgcatca tgtgactgga cgtttgcggg
      901 tatagtagag gcagtcatcc taatggcgga gcttttcggc atcttttgga caccgccaga
      961 tgtttccagt ttcatagcct ccctgatagg tgattttgaa ttgcaagggc ctgaggacct
     1021 ggctgtggag cttgtacccg tggtcatggg tggcatagga atggttctcg gctttactgc
     1081 tgagaagata ggccgcatgt tatcgtccgc tgcatcaaca ctacgggcgt gcaaagactt
     1141 ggggaattat gctcttgaca tattaaaact agttatgaag tggttcttcc caaagaaaga
     1201 agagaaagcc gagatggaga ccctaagggc gattgaggat gccgtcctgg acatggaagc
     1261 tataggaaat aaccatctca caaccctcct taaggataag gacagcctca cggctttcat
     1321 gaagactcta gacctagaag aagagaaggc aaggaagctg tccaccaaat catcctcgcc
     1381 agacattgtc ggcaccatta atgccatact agctagaata gctgctgcca ggtccctctt
     1441 gcacaaggct aaagaagaaa tgtttagcag gatcagaccc gtggttgtca tgatctcggg
     1501 tagacctggc attggcaaaa cccacatggc aagacacttg gctaagagta tcgccaacac
     1561 catgagcggc gaccagagag tggggctcgt cccacgcaac ggtgttgatc attgggacgc
     1621 ctacagggga gagagggtgg ttttatggga tgattatggc atgggaaacc ctgtcaaaga
     1681 cgccctaaca ctgcaagaac tggccgacac ctgcccagta actctaaatt gtgataggat
     1741 tgagaacaag gggaagatgt ttgacagtga cgtcatcata atcacgacca atttagtcaa
     1801 cccagcgccc ctcgattatg tgaacttcga ggcgtgctcc agaagggtcg attttctggt
     1861 ctatgcagag tcaccagaaa ttgagaaggt taagagagac ttccccggcc aacctgacat
     1921 gtggaaggac cattttaagc cagatttttc ccacataaaa ctgactctag ccccacaggg
     1981 tggatttgac aagaatggca acaccccgca tggtaagggc accatgcgat ccctaaccca
     2041 gggatccctg actgcaaggg ttgcaggtct tgttcatgag aggagagacg agtttcagct
     2101 ccaggggaac gaccttcaaa catataactt tgacaccaac agagtctctg catttaggaa
     2161 gctggccgca gacaacaagt atgggatcgt ggagactatg agagtgggca cagcgcttag
     2221 gagtgtcaag accttggaag atctgaaagt tgcactgagg gatgtgaagt tcaatgagtg
     2281 tgagataatt tacaggaatt ccaaataccg agtctcttcc aatggtaaag gttctgtctc
     2341 tgttaacaaa gttgaagacc agacatccca gaccgcaaac gaagtgggtg cagcactcct
     2401 tagactcaga caggcaagag ccagatacta tgtcagctgc ttccaggacc tcgtttacac
     2461 tctaatacag gtcgccggag catcattcgt cgtcaacagg atctctaaaa ggttctgctg
     2521 ggagagatgg gtcaaaccaa ccgagaccca agaaacgagt gaatccgaaa aggaagtggc
     2581 ccaaggcaga tgggagattg agcccaagga cacagaaccg gaaggtaaga agggtaagaa
     2641 caagaaagga agaggcaaga aacacacagc tttctccagt aaaggcctga gtgatgagga
     2701 gtatgacgag ttcaagagaa tcagagaaga aaggaacgga aaatactcca ttgaggaata
     2761 cctgcaagac cgggatcgct actatgagga agtggcggtt gcccgggcga cagaggagga
     2821 cttctgtgaa gaggaggagg ccaagataag acaaagaatc tttcgcccca caaagaaaca
     2881 gaggaaggaa gaaagggggg tgcttggttt ggttactggc tcagacatca ggaagagaag
     2941 accagacgat tttcaaccga agggcaacct gtgggcagac gacaccagga gtgtggacta
     3001 caacgagaga cttgatttcg aggctccccc gagtgtctgg tcaagaatag tcccattggg
     3061 cactggctgg ggcttctggg tctcatcaaa cctcctgatc acaacaacgc acgtcctacc
     3121 taaggggatt aatgaactct ttggagttga gatcaaacag attcagattc acaagtctgg
     3181 agagttctgc aggttcagat tcccaagacc aattagacca gatgtcacag ggctcgtgtt
     3241 ggaggaaggc gctccagaag gcactgtctg ctctatactc gtaaagagac ctacaggtga
     3301 gatgatcccc ctggcagtga ggatgggcac acatgcatcc atgaaaatac agggtagaac
     3361 cgtcggtggt cagatgggaa tgctcctcac aggggcaaat gcgaagaaca tggatcttgg
     3421 caccggtcct ggtgactgcg gttgccctta catctacaaa cgtggcaatg atatagttgt
     3481 cgcgggtgtc cacaccgcag cagcccgggg aggcaacact gtcatatgtg ccactcaagg
     3541 gcaagatggg gaagcagtcc ttgagggaaa tgagaaccat ggcacttact gcggtgctcc
     3601 aatcttgggt ccaggcaagg cgcccaagct tagcacgaag accaagttct ggcgttcatc
     3661 accagacgct ttgccgccag gcacttatga gcctgcctac ttgggaggta aggaccctag
     3721 agtggaaaaa ggaccatccc tgcagcaagt catgagggac cagctaaaac ctttcacaga
     3781 acccaggggt aagccaccta gacctgcagt cttagaagaa gccaaaaaga cagtgatgaa
     3841 tgttctagag caaaccattg accctgctaa accgtggacc tattcccaag catgcgcctc
     3901 actggacaag accacttcca gtggtagccc ccatcatgtc aggaaaaatg accattggaa
     3961 tggggaatcc ttcactggcc cactcgcaga ccaagcatcc aaagccaacc tcatgtacga
     4021 gcaggccaaa catgtgcagc ccgtgtacac ggccgcactt aaagatgaac tagtcaaaac
     4081 tgacaagatc tacaagaaga taaagaaaag gctcttatgg gggtcggatc ttggtacaat
     4141 gatcaggtgt gccagggcct ttggcggtct catggatagc atgaaggcaa gctgcatagc
     4201 cctcccatgt agggtaggaa tgaacatgaa tgaagatggc cccatcatat ttgacaagca
     4261 ttctaagtat aggtaccatt atgatgctga ctattccagg tgggactcaa cccagcaaag
     4321 gagcattctc ttggccgcta tggaagtgat ggtgcggttc tctgctgaac cagagctggc
     4381 acaggtggtt gcagaggacc tcctggcacc cagccaacta gatgtcggcg atttcgtcat
     4441 ctcagtccag gagggtctgc catcaggggt cccatgcaca tcacaatgga attcaatagc
     4501 acactggatc ctaaccttga gtgcaatagc agaagtatcg ggtctctcac cagatgttgt
     4561 tcaagcccac tcctgtttct cattctacgg tgatgatgag atcgtcagca ctgacatcaa
     4621 ccttgatccc atgaagttga cacagaagct cagagagtat ggcctggtcc ccacccgacc
     4681 tgacaaaact gagggtcccc tcgtaataac tgaagatctc accggcctaa cgttcctgcg
     4741 taggtcaatt gcacgggacc cagctgggtg gtttggaaaa ttggatcaag actcaatcct
     4801 cagacagttg tactggacaa ggggccccaa ccatgagaac ccatatgaga gcatggtccc
     4861 tcattcccag cgggccacac aacttatggc cctcctcggt gaggcctcac tgcatggtcc
     4921 ccagttttac aagaaagtta gcaagatggt tattaatgag atcaaaagtg gtggtctgga
     4981 attctatgtg cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac
     5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
     5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaccaat gaggttatgg
     5161 cacttgagcc ggtggtggga gcctcaattg ctgctcctgt cgtcggtcaa caaaatataa
     5221 ttgacccctg gattagagaa aattttgttc aggcaccaca gggtgagttc actgtttcac
     5281 caaggaactc acctggtgag atgcttctaa atcttgaatt aggccctgag ctcaaccctt
     5341 atctgagtca cttgtcccgc atgtataatg gctatgctgg tggtatgcag gttcaggtgg
     5401 tcctagctgg gaatgcgttc acagctggta aaatcatctt tgccgccgtc ccaccacatt
     5461 tccctgttga gaacattagt gcagcacaaa tcacaatgtg cccccatgta attgttgatg
     5521 taagacagct tgagccagtg cttttgcccc tccctgacat aaggaataga ttctttcatt
     5581 ataatcagga aaatacctcc cggatgagac ttgtggctat gttgtataca ccccttagag
     5641 caaattctgg tgaggatgtg tttacggtgt cttgcagagt cctgacccgc cctgcccccg
     5701 actttgagtt cacgtttttg gtgccaccaa ctgtggagtc aaagactaag ccctttacac
     5761 tccctattct gactcttgga gagctgtcca actccagatt ccccgctccg atagacatgt
     5821 tgtacactga ccccaatgag gcaattgtgg tgcaaccaca aaatggcagg tgcactctag
     5881 atggaacact tcaagggacc acccaactgg tacccaccca aatttgctcc ttcaggggca
     5941 cgctaattag ccagacgtcg aggtctgcag attcaacaga ttcagcccca cgggtgagga
     6001 accaccctct ccacgttcag ctgaagaacc tcgatgggac accatatgac ccaacagatg
     6061 aggtgccagc agttttgggt gccatagatt tcaaaggaac tgtgtttggg gtcgctagcc
     6121 aaaggaacac cacagggaac actataggag caacccgcgc ccatgaagtg cacatagaca
     6181 ccacaaaccc tagatacacc ccaaagcttg gctctgtgtt gatgcattct gaatctactg
     6241 attttgatga tggacaaccc acccgcttca cccccattgg catgggagcc gatgattggc
     6301 atcaatggga attgcccgaa tattctggtc acctcactct taacatgaat ttggcccccg
     6361 cagttgcccc tgctttcccc ggtgagcgca ttctcttctt cagatcagtg gtgccgtctg
     6421 ctggtggcta tggatcaggt cacatagatt gcctcatccc acaggagtgg gttcagcatt
     6481 tctaccagga ggccgctcca tcacagtccg cggtggctct tatcagatat gttaaccctg
     6541 acactggaag aaacatcttt gaggcaaaac tgcatagaga agggttcatc actgtggcaa
     6601 attctggaaa caaccccata gttgtgcccc caaatggtta cttcaggttt gaggcctggg
     6661 tcaatcagtt ctacacactc acccccatgg gaactggaca ggggcgcaga agagttcaat
     6721 aatggcagga gctttcttag ctggattggc aggtgacgcc ataacaagtg gtgtcgggtc
     6781 cctaatcaat gctggggcca atgcaattaa ccaaaaggta gaatatgatt ttaataaaca
     6841 gctccaattg gcatccttca aacatgacaa agagatgctg caatcacaag tactggccac
     6901 taaacagctc cagcaggaga tgatgaacat aaggcagggg gtcttgtccg ctggcggctt
     6961 ttcccctaca gatgccgcga gaggtgctgt gaatgcgccg atgacaaaaa ttttggattg
     7021 gaatggaaca aggtactttg ccccaaatag tatgaagaca accagttatt cgggccagtt
     7081 ttccagcaac cctgtgcata ggcaacccac tttaccccgt tctgaacccc caaaaattaa
     7141 ggttaatagt gattctgcta gtgtgtatag ttctgcatct actgctcctt cacaatcaac
     7201 tcactcaacg gctttgactg cggggtctag ctcatctagg acaacgtcct cttctgcagc
     7261 agcttccacc ctatctagga ctagtgactg ggtgagagga caaaatgaaa ggcttagccc
     7321 gtttatggat ggtgctctcc aaacaacttt tgtcacacca ccatcgagca aagcttcatc
     7381 atatgggtcg gtctcaaccg ttcccaaagc tgttttggac tcctggactc ctatgttcaa
     7441 tacccatagg cagcctctct tcgctcat
//