Typing tool
|
Complete norovirus genomes
MG571778 | GII.6 | ||
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GII.P7 |
ORF1: 5..5098 ORF2: 5079..6722 ORF3: 6722..7468LOCUS MG571778 7468 bp RNA linear ENV 20-JUN-2018 DEFINITION MAG: Norovirus GII.6 clone V4B RNA-dependent RNA polymerase (RdRp) and capsid protein VP1 (VP1) genes, complete cds; and capsid protein VP2 (VP2) gene, partial cds. ACCESSION MG571778 VERSION MG571778.1 DBLINK BioProject: PRJNA418044 BioSample: SAMN08013693, SAMN08013772 KEYWORDS ENV; Metagenome Assembled Genome; MAG. SOURCE Norovirus GII.6 (gut metagenome) ORGANISM Norovirus GII.6 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7468) AUTHORS Siqueira,J.D., Dominguez-Bello,M.G., Deng,X. and Delwart,E. TITLE Uncontacted Amerindians fecal virome includes widely dispersed human pathogens JOURNAL Unpublished REFERENCE 2 (bases 1 to 7468) AUTHORS Siqueira,J.D., Dominguez-Bello,M.G., Deng,X. and Delwart,E. TITLE Direct Submission JOURNAL Submitted (21-NOV-2017) Molecular Virology, Blood Systems Research Institute, 270 Masonic Avenue, San Francisco, CA 94118, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R9 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7468 /organism="Norovirus GII.6" /mol_type="genomic RNA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:499193" /clone="V4B" /environmental_sample /country="Venezuela" /collection_date="2015" /metagenome_source="gut metagenome" /note="metagenomic" gene 5..5098 /gene="RdRp" CDS 5..5098 /gene="RdRp" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="AWU65955.1" /translation="MKMASNDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKK MLGAVPKGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTT VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD LLGKLKPLNLLHLLASCDWTFAGIVEAVILMAELFGIFWTPPDVSSFIASLIGDFELQ GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIVETMRVGTALRS VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVNKVEDQTSQTANEVGAAL LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEK EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL LITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENHGTYCGAPILGPG KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST QQRSILLAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ WNSIAHWILTLSAIAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM FRWMRFSDLSTWEGDRNLAPEGVNEDGVE" gene 5079..6722 /gene="VP1" CDS 5079..6722 /gene="VP1" /codon_start=1 /product="capsid protein VP1" /protein_id="AWU65956.1" /translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD IRNRFFHYNQENTSRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG AIDFKGTVFGVASQRNTTGNTIGATRAHEVHIDTTNPRYTPKLGSVLMHSESTDFDDG QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ" gene 6692..>7468 /gene="VP2" CDS 6722..>7468 /gene="VP2" /codon_start=1 /product="capsid protein VP2" /protein_id="AWU65957.1" /translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST HSTALTAGSSSSRTTSSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAH" ORIGIN 1 gtgaatgaag atggcgtcta acgacgctac cactgccttt ggcagccaaa actctgtcaa 61 tgacagtatc aacaccgccc cttctaataa agaagaggtt ggtgcattct ccaacatcaa 121 agttggtttt aagaagatgc tgggtgccgt ccccaagggg accaaagcac ccagtagtga 181 tcagcactgc ccctcagtta agatcgggac caagacatta acagttcccc ctgagcctcc 241 aaatggtgaa gacaccgtgc agtttgatgc gaagtcggaa actgtgcgcg ggttaccaga 301 cttgacaacg gtgcagaatg aacatgaaaa cacaccatac actgtccccc cattgagtga 361 aagggagcac agaccagcta ccgaaccgct tcctggcaca atactggaga tgtgggatgg 421 tgaattctac cattactctg tgtacgtcag cggtggcaaa gccctagggg ttcacaaacc 481 ccctgcagcg ataagcctcg cgacgataga gctcacaccc atatctctct attggagacc 541 cgtttacacc cccaactatt tggtctgccc agacacgctg aagggccttg ctggtgagaa 601 gttcccctac acggccttca gcaacaactg ttacaacttc tgttgctggg tgcttgagct 661 caatgacaca tggcttagta ggagaagcat ctctagaacc accggcttct tcaaaccata 721 ccaatcttgg aataggaaac cccttccaac cgttgatgat ggaaaaatca aaaaggtggc 781 caacgcaatt ctctgtgcac ttgggtcact gttttcaaaa ccaatcaagg acctattggg 841 caagcttaaa ccattgaact tgctgcactt gctcgcatca tgtgactgga cgtttgcggg 901 tatagtagag gcagtcatcc taatggcgga gcttttcggc atcttttgga caccgccaga 961 tgtttccagt ttcatagcct ccctgatagg tgattttgaa ttgcaagggc ctgaggacct 1021 ggctgtggag cttgtacccg tggtcatggg tggcatagga atggttctcg gctttactgc 1081 tgagaagata ggccgcatgt tatcgtccgc tgcatcaaca ctacgggcgt gcaaagactt 1141 ggggaattat gctcttgaca tattaaaact agttatgaag tggttcttcc caaagaaaga 1201 agagaaagcc gagatggaga ccctaagggc gattgaggat gccgtcctgg acatggaagc 1261 tataggaaat aaccatctca caaccctcct taaggataag gacagcctca cggctttcat 1321 gaagactcta gacctagaag aagagaaggc aaggaagctg tccaccaaat catcctcgcc 1381 agacattgtc ggcaccatta atgccatact agctagaata gctgctgcca ggtccctctt 1441 gcacaaggct aaagaagaaa tgtttagcag gatcagaccc gtggttgtca tgatctcggg 1501 tagacctggc attggcaaaa cccacatggc aagacacttg gctaagagta tcgccaacac 1561 catgagcggc gaccagagag tggggctcgt cccacgcaac ggtgttgatc attgggacgc 1621 ctacagggga gagagggtgg ttttatggga tgattatggc atgggaaacc ctgtcaaaga 1681 cgccctaaca ctgcaagaac tggccgacac ctgcccagta actctaaatt gtgataggat 1741 tgagaacaag gggaagatgt ttgacagtga cgtcatcata atcacgacca atttagtcaa 1801 cccagcgccc ctcgattatg tgaacttcga ggcgtgctcc agaagggtcg attttctggt 1861 ctatgcagag tcaccagaaa ttgagaaggt taagagagac ttccccggcc aacctgacat 1921 gtggaaggac cattttaagc cagatttttc ccacataaaa ctgactctag ccccacaggg 1981 tggatttgac aagaatggca acaccccgca tggtaagggc accatgcgat ccctaaccca 2041 gggatccctg actgcaaggg ttgcaggtct tgttcatgag aggagagacg agtttcagct 2101 ccaggggaac gaccttcaaa catataactt tgacaccaac agagtctctg catttaggaa 2161 gctggccgca gacaacaagt atgggatcgt ggagactatg agagtgggca cagcgcttag 2221 gagtgtcaag accttggaag atctgaaagt tgcactgagg gatgtgaagt tcaatgagtg 2281 tgagataatt tacaggaatt ccaaataccg agtctcttcc aatggtaaag gttctgtctc 2341 tgttaacaaa gttgaagacc agacatccca gaccgcaaac gaagtgggtg cagcactcct 2401 tagactcaga caggcaagag ccagatacta tgtcagctgc ttccaggacc tcgtttacac 2461 tctaatacag gtcgccggag catcattcgt cgtcaacagg atctctaaaa ggttctgctg 2521 ggagagatgg gtcaaaccaa ccgagaccca agaaacgagt gaatccgaaa aggaagtggc 2581 ccaaggcaga tgggagattg agcccaagga cacagaaccg gaaggtaaga agggtaagaa 2641 caagaaagga agaggcaaga aacacacagc tttctccagt aaaggcctga gtgatgagga 2701 gtatgacgag ttcaagagaa tcagagaaga aaggaacgga aaatactcca ttgaggaata 2761 cctgcaagac cgggatcgct actatgagga agtggcggtt gcccgggcga cagaggagga 2821 cttctgtgaa gaggaggagg ccaagataag acaaagaatc tttcgcccca caaagaaaca 2881 gaggaaggaa gaaagggggg tgcttggttt ggttactggc tcagacatca ggaagagaag 2941 accagacgat tttcaaccga agggcaacct gtgggcagac gacaccagga gtgtggacta 3001 caacgagaga cttgatttcg aggctccccc gagtgtctgg tcaagaatag tcccattggg 3061 cactggctgg ggcttctggg tctcatcaaa cctcctgatc acaacaacgc acgtcctacc 3121 taaggggatt aatgaactct ttggagttga gatcaaacag attcagattc acaagtctgg 3181 agagttctgc aggttcagat tcccaagacc aattagacca gatgtcacag ggctcgtgtt 3241 ggaggaaggc gctccagaag gcactgtctg ctctatactc gtaaagagac ctacaggtga 3301 gatgatcccc ctggcagtga ggatgggcac acatgcatcc atgaaaatac agggtagaac 3361 cgtcggtggt cagatgggaa tgctcctcac aggggcaaat gcgaagaaca tggatcttgg 3421 caccggtcct ggtgactgcg gttgccctta catctacaaa cgtggcaatg atatagttgt 3481 cgcgggtgtc cacaccgcag cagcccgggg aggcaacact gtcatatgtg ccactcaagg 3541 gcaagatggg gaagcagtcc ttgagggaaa tgagaaccat ggcacttact gcggtgctcc 3601 aatcttgggt ccaggcaagg cgcccaagct tagcacgaag accaagttct ggcgttcatc 3661 accagacgct ttgccgccag gcacttatga gcctgcctac ttgggaggta aggaccctag 3721 agtggaaaaa ggaccatccc tgcagcaagt catgagggac cagctaaaac ctttcacaga 3781 acccaggggt aagccaccta gacctgcagt cttagaagaa gccaaaaaga cagtgatgaa 3841 tgttctagag caaaccattg accctgctaa accgtggacc tattcccaag catgcgcctc 3901 actggacaag accacttcca gtggtagccc ccatcatgtc aggaaaaatg accattggaa 3961 tggggaatcc ttcactggcc cactcgcaga ccaagcatcc aaagccaacc tcatgtacga 4021 gcaggccaaa catgtgcagc ccgtgtacac ggccgcactt aaagatgaac tagtcaaaac 4081 tgacaagatc tacaagaaga taaagaaaag gctcttatgg gggtcggatc ttggtacaat 4141 gatcaggtgt gccagggcct ttggcggtct catggatagc atgaaggcaa gctgcatagc 4201 cctcccatgt agggtaggaa tgaacatgaa tgaagatggc cccatcatat ttgacaagca 4261 ttctaagtat aggtaccatt atgatgctga ctattccagg tgggactcaa cccagcaaag 4321 gagcattctc ttggccgcta tggaagtgat ggtgcggttc tctgctgaac cagagctggc 4381 acaggtggtt gcagaggacc tcctggcacc cagccaacta gatgtcggcg atttcgtcat 4441 ctcagtccag gagggtctgc catcaggggt cccatgcaca tcacaatgga attcaatagc 4501 acactggatc ctaaccttga gtgcaatagc agaagtatcg ggtctctcac cagatgttgt 4561 tcaagcccac tcctgtttct cattctacgg tgatgatgag atcgtcagca ctgacatcaa 4621 ccttgatccc atgaagttga cacagaagct cagagagtat ggcctggtcc ccacccgacc 4681 tgacaaaact gagggtcccc tcgtaataac tgaagatctc accggcctaa cgttcctgcg 4741 taggtcaatt gcacgggacc cagctgggtg gtttggaaaa ttggatcaag actcaatcct 4801 cagacagttg tactggacaa ggggccccaa ccatgagaac ccatatgaga gcatggtccc 4861 tcattcccag cgggccacac aacttatggc cctcctcggt gaggcctcac tgcatggtcc 4921 ccagttttac aagaaagtta gcaagatggt tattaatgag atcaaaagtg gtggtctgga 4981 attctatgtg cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac 5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg 5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaccaat gaggttatgg 5161 cacttgagcc ggtggtggga gcctcaattg ctgctcctgt cgtcggtcaa caaaatataa 5221 ttgacccctg gattagagaa aattttgttc aggcaccaca gggtgagttc actgtttcac 5281 caaggaactc acctggtgag atgcttctaa atcttgaatt aggccctgag ctcaaccctt 5341 atctgagtca cttgtcccgc atgtataatg gctatgctgg tggtatgcag gttcaggtgg 5401 tcctagctgg gaatgcgttc acagctggta aaatcatctt tgccgccgtc ccaccacatt 5461 tccctgttga gaacattagt gcagcacaaa tcacaatgtg cccccatgta attgttgatg 5521 taagacagct tgagccagtg cttttgcccc tccctgacat aaggaataga ttctttcatt 5581 ataatcagga aaatacctcc cggatgagac ttgtggctat gttgtataca ccccttagag 5641 caaattctgg tgaggatgtg tttacggtgt cttgcagagt cctgacccgc cctgcccccg 5701 actttgagtt cacgtttttg gtgccaccaa ctgtggagtc aaagactaag ccctttacac 5761 tccctattct gactcttgga gagctgtcca actccagatt ccccgctccg atagacatgt 5821 tgtacactga ccccaatgag gcaattgtgg tgcaaccaca aaatggcagg tgcactctag 5881 atggaacact tcaagggacc acccaactgg tacccaccca aatttgctcc ttcaggggca 5941 cgctaattag ccagacgtcg aggtctgcag attcaacaga ttcagcccca cgggtgagga 6001 accaccctct ccacgttcag ctgaagaacc tcgatgggac accatatgac ccaacagatg 6061 aggtgccagc agttttgggt gccatagatt tcaaaggaac tgtgtttggg gtcgctagcc 6121 aaaggaacac cacagggaac actataggag caacccgcgc ccatgaagtg cacatagaca 6181 ccacaaaccc tagatacacc ccaaagcttg gctctgtgtt gatgcattct gaatctactg 6241 attttgatga tggacaaccc acccgcttca cccccattgg catgggagcc gatgattggc 6301 atcaatggga attgcccgaa tattctggtc acctcactct taacatgaat ttggcccccg 6361 cagttgcccc tgctttcccc ggtgagcgca ttctcttctt cagatcagtg gtgccgtctg 6421 ctggtggcta tggatcaggt cacatagatt gcctcatccc acaggagtgg gttcagcatt 6481 tctaccagga ggccgctcca tcacagtccg cggtggctct tatcagatat gttaaccctg 6541 acactggaag aaacatcttt gaggcaaaac tgcatagaga agggttcatc actgtggcaa 6601 attctggaaa caaccccata gttgtgcccc caaatggtta cttcaggttt gaggcctggg 6661 tcaatcagtt ctacacactc acccccatgg gaactggaca ggggcgcaga agagttcaat 6721 aatggcagga gctttcttag ctggattggc aggtgacgcc ataacaagtg gtgtcgggtc 6781 cctaatcaat gctggggcca atgcaattaa ccaaaaggta gaatatgatt ttaataaaca 6841 gctccaattg gcatccttca aacatgacaa agagatgctg caatcacaag tactggccac 6901 taaacagctc cagcaggaga tgatgaacat aaggcagggg gtcttgtccg ctggcggctt 6961 ttcccctaca gatgccgcga gaggtgctgt gaatgcgccg atgacaaaaa ttttggattg 7021 gaatggaaca aggtactttg ccccaaatag tatgaagaca accagttatt cgggccagtt 7081 ttccagcaac cctgtgcata ggcaacccac tttaccccgt tctgaacccc caaaaattaa 7141 ggttaatagt gattctgcta gtgtgtatag ttctgcatct actgctcctt cacaatcaac 7201 tcactcaacg gctttgactg cggggtctag ctcatctagg acaacgtcct cttctgcagc 7261 agcttccacc ctatctagga ctagtgactg ggtgagagga caaaatgaaa ggcttagccc 7321 gtttatggat ggtgctctcc aaacaacttt tgtcacacca ccatcgagca aagcttcatc 7381 atatgggtcg gtctcaaccg ttcccaaagc tgttttggac tcctggactc ctatgttcaa 7441 tacccatagg cagcctctct tcgctcat //