Typing tool
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Typing tool
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Complete norovirus genomes
| LC939693 | GII.17 | |
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| GII.P17 |
ORF1: 1..5097
ORF2: 5078..6694
ORF3: 6694..7473
LOCUS LC939693 7491 bp RNA linear VRL 24-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY3259/2024/JP RNA, nearly complete
genome.
ACCESSION LC939693
VERSION LC939693.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7491)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 341.42x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7491
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY3259/2024/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan: Tokyo"
/collection_date="2024-03"
CDS <1..5097
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BIB40822.1"
/translation="SNDASVAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGARSKQP
PLGETKQTPRPPRPPTPELVKKVPPPPPNGEDEPKVVYKVGEGVSGLPDLTTVAQPDA
QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL
AKIELTPLSLYWRVVYTPQYLIAPETLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKL
KPLNIMNILATCDWTFAGIVESTILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSSK
SASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA
KKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA
KRDFPGQPDMWKDHYRSDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS
GLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD
ELKQAIKSITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRS
ARIRYYVKCFQEAIYSLLQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCP
KPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRREERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS
LFITSTHVIPKGITEAFGVPINQIQVHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT
VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWS
GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN
HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5078..6694
/codon_start=1
/product="capsid protein VP1"
/protein_id="BIB40823.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQSNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAGTDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGDHPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6694..7473
/codon_start=1
/product="capsid protein VP2"
/protein_id="BIB40824.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGILAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSAPQSKPAKPRSLGSSSSSSSVYSMSTQLT
SLTSGSSSNAPSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 tctaacgacg cttccgtcgc cgttgctggc aaaaacaaca acaacgacaa ggaaaaatct
61 tcaagtgaca gcttgttttc taacatgact gttactttta agaaagccct cggggcgcgg
121 tctaagcagc cgcccctggg agaaacgaaa caaacaccaa gaccaccaag gccaccgaca
181 ccggaattgg tgaagaaggt acccccaccc ccccccaatg gcgaagatga gccaaaggta
241 gtgtataagg tgggagaagg tgtgtctggg ctgcccgact taacaaccgt ggcacaacct
301 gacgcacaga acacagccta tagtgtcccc ccacttagcc agagagaggt cggagaagct
361 aaagaaccgt tgcctggctc cattctggaa atgtgggatg gtgagatcta ccactatggg
421 ctgtatgttg agcgggggca tgtactcgga gtgcacaaac cacctgccgc aataagcctt
481 gccaaaattg aattaacacc gctgtctctc tactggagag tggtttacac tccccagtac
541 ttgatagctc cagagaccct taagaattta agcggagaga ctttcccata cacggccttt
601 gataacaact gttatgcctt ctgttgttgg gttttagatc tcaacgactc ctggcttagc
661 agaagaatga tccaaagaac aaccggattc ttcagaccgt atcaggactg gaacagaaaa
721 cccttgccaa ccatggatga accaaaaatc aaaaaggccg cgaatgctgt tctgtgtgct
781 ctctcctcac tcttcactag gcccatcaaa gatgtcattg gaaagcttaa accactgaat
841 attatgaaca tactggcaac ttgtgattgg acttttgcgg gcatagtgga atccacgatc
901 cttcttgctg agctctttgg ggtgttctgg acgcccccag atgtgtctgc gataattgct
961 cccttactcg gtgactacga gatgcaaggc cccgaggacc tggccgtgga acttgtgccc
1021 gtggtaatgg gaggaatagg tttggtgtta ggattcacca aggaaaagat cggcaagatg
1081 ctttcatcag ctgcgaccac actcagggcc tgtaaggatc taggatctta tgggttggag
1141 atactcaaac tggtcatgaa gtggttcttc cccaagaagg aggaggccaa cgagttagcc
1201 atggtgaggg ccattgagga cgcagttctg gatttggagg caatagaaaa caaccacatg
1261 accactctcc ttaaggacaa agacagcctg gccacataca tgagaactct tgacttggaa
1321 gaagaaaaag caaggaaact gtcatccaaa tcggcatcac ctgacatcgt gggcacagta
1381 aacgcgttat tggcaaggat agcagccgcc aggtcgctgg tccacaaggc taaggaggag
1441 ctctcaagca gacagaggcc tgttgttgta atgatatcag gtaggccagg tataggaaag
1501 acccatctgg ccagagagct agccaagaag gttgcgtcaa cactgtcagg cgaccaaagg
1561 attggactga tacctagaaa tggcgtcgac cattgggacg cctacaaagg agagcgggtg
1621 gttctgtggg atgactatgg catgagtaac cctatacaag acgctctgag gctccaagaa
1681 ttggctgaca cctgtcctct gaccctaaat tgtgacagga ttgaaaacaa aggaaaagtg
1741 ttcgacagtg acgccataat cataacaacc aaccttgcaa acccagcacc actggattat
1801 gtcaactttg aggcttgttc cagacgcata gacttcttgg tgtatgcaga cgcgcctgac
1861 atcgagaagg ctaagcgtga cttccctggc caaccagata tgtggaagga ccattacaga
1921 tcagacttct cacacatcaa acttcagctg gcaccacagg gaggctttga taagaatggc
1981 aacaccccac atggcaaagg tgtggttaag tctctgacga ttggttctct gatcgccagg
2041 gcttctggct tgctccatga gagaatggac gaatttgagc tccaaggttc tgacttacca
2101 accttcaatt tcgaccgtaa caaagtcgcc gccttcagac aattggcagc tgaaaacaaa
2161 tatggtctta tggacacact gagggtcggc aaccagctaa aaagtgtcaa aaccctggat
2221 gagctgaagc aggctataaa gagcatcacc atcaagaagt gccagatagt gtacaatgga
2281 tgcacctaca ccatggaatc tgatgggagg aacaaggttg tggttgaaaa ggttcaaaat
2341 gcaacagtcc aaaccaataa tgaacttgca ggagcactcc accacctgag gtctgcaagg
2401 ataaggtatt atgtcaaatg tttccaagaa gctatttact ctctactcca aattgctggt
2461 gcggccttcg tcaccacacg catcgtgagg cgcatgaaca tctcaaacct ctggtcgaag
2521 ccacccgtcg aagagggtga tgagcctgaa gacaaagggg ggtgccccaa gcccagggat
2581 gaagatgacc tcactattga ctccaaagac attaaagcag aagggaagaa gggcaagaac
2641 aaatctggcc ggggcaagaa acacacagct ttctcgtcca agggcctcag tgatgaagag
2701 tacgatgagt acaagagaat cagggaggag aggaatggca aatactcaat agaggaatac
2761 ctccaggata gggatagata ttatgaagag cttgccattg ctaaggccac tgaggaagac
2821 ttctgtgaag aggaggaaat caaaattcgc cagagaatct tccggcccac caggaagcaa
2881 cggagagagg aaagagccac gctcgggctt gtcacaggat cggaaatcag aaagaggaat
2941 ccagatgact ttaagccaaa aggaaagttg tgggctgatg acaacagaag tgtggactac
3001 aatgagagga tagattttga ggctcccccg agtgtttggt ctaggatagt caactttggt
3061 acaggatggg gattctgggt ctccccaagt ctctttataa cttcaacaca tgtcatacca
3121 aaaggaatca ctgaggcttt tggagtcccc attaaccaaa ttcaagttca caaatctgga
3181 gagttttgcc gcttgcggtt tccaaaacca atcaggccag acgtgagtgg aatgatcttg
3241 gaagagggtg cccctgaagg cactgttgtg tccatcctca tcaagaggac aacaggggaa
3301 ctgatgcctc tcgcagttag aatgggaact cacgccacaa tgaaaatcca aggtagaacg
3361 gtgggcggtc aaatgggcat gcttctcact ggctcaaacg ctaaaagcat ggacctaggc
3421 acaacaccag gtgactgtgg gtgcccatac atatacaaaa ggggcaatga cttcgtggtc
3481 attggggtgc acactgcagc agcccgtgga ggcaacacgg tcatatgtgc cacacaggga
3541 agtgaaggcg aagccaccct cgaaggaggt gacaacaagg gcacctattg tggagccccc
3601 atcttgggac ctggcaacgc accaaaattg agcacaaaaa caaaattctg gagatcttct
3661 aacgcgccgc ttcctccagg cacctatgaa ccagcatacc ttggtggaaa agacccgcgt
3721 gtgaagggag gcccatctct acaacaggtt atgagagatc aactcaaacc ttttacagag
3781 cccagaggga agccaccaaa accaagtgtc ctagaatcag caaagaagac catcatcaat
3841 gttctagaac aaaccattga cccccctgaa aagtggtcat atgcccaagc ttgtgcatcc
3901 ctcgacaaga caacctccag tggataccca catcacgtcc ggaagaatga ttattggagt
3961 ggcgaatcct tcacggggaa acttgcagac caggcctcaa aagcaaacct tatgtatgag
4021 gaaggcaagc acatgcaacc agtttacacc gcagcactca aagacgagct cgtgaaaact
4081 gacaaaattt atggcaagat caagaaaaga ctcctgtggg gctctgacct atccaccatg
4141 attcgatgcg ccagggcatt tggtggcctc atggatgagt tcaaagctaa ttgtatcaca
4201 ctccctatca gagttggtat gaatatgaat gaggatggtc ccataatatt tgaaaagcac
4261 tccaggtaca ggtaccacta tgatgctgat tactcccgct gggattccac acaacagcgg
4321 gcagtgctgg aagcggcact tgaaatcatg gtgagatttt ctgctgagcc acagttggca
4381 caaatagtgg cagaggacct gctatcacca agtgtggttg atgtgggcga tttcaaaatt
4441 gctatcaatg aaggcctacc atctggcgtg ccctgcactt cacaatggaa ttctattgcc
4501 cactggttac tcaccctgtg tgccctgtct gaagtgacag gactaggccc tgacatcata
4561 caagccaact ccatgtactc tttctatggt gatgatgaga tagtgagcac agacataaaa
4621 ttagacccag agaaattgac tgcaaaactc aaagaatatg gtcttaaacc cacccggcct
4681 gacaagactg aggggccact ggtaattagt gaggacctga atgggttgac tttcctccgc
4741 cgaacagtca cccgcgatcc agcgggttgg tttggaaagt tggaccaaaa ctccatcctc
4801 aggcagctgt actggacaag gggacccaac catgaagacc ccagtgagac catgatacca
4861 cacgcacaga gacctgtgca gctcatggca ctgctaggag agtcctccct acatggaccc
4921 tcattttaca gcaaggttag caagctggtc atatctgaac ttaaagaggg aggaatggat
4981 ttttatgtgc ccagacaaga gtcaatgttc agatggatga ggttctcaga tctaagcaca
5041 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgaatgacgc
5101 cgctccatct aatgatggtg ctgctggtct cgtaccagag ggcaataacg agacccttcc
5161 cctagaacca gttgcgggcg cagctatagc cgcacccgtc actggccaaa acaatataat
5221 tgacccctgg attagaacaa attttgtgca agcaccaaat ggagagttca cagtgtcacc
5281 cagaaactct cctggagaaa ttttactaaa cttagagttg ggccctgatt tgaaccctta
5341 tttggctcat ttgtcaagga tgtacaatgg gtatgctggt ggagttgaag tccaggttct
5401 cctggcgggg aatgcgttca ctgccgggaa gatcctcttc gccgctgtcc cgccaaattt
5461 cccagtggaa ttcttaagtc cagcccagat tacaatgctc ccacatataa tagtagatgt
5521 taggactctt gaaccaataa tgatcccatt acctgatgtt aggaacacat tcttccacta
5581 taataaccag tccaacagcc gcatgagatt agtggctatg ctttataccc cccttagatc
5641 taatggctca ggtgatgatg ttttcactgt ttcttgcagg gttttgacta ggcccactcc
5701 tgattttgag ttcacttatc tagtgccacc ctctgttgaa tctaagacta agcccttttc
5761 cttacccatt ctaacccttt ctgagctcac aaattcgagg ttcccggtcc ccattgattc
5821 gcttttcacc gcccagaaca atgtgttgca ggtgcagtgt caaaatggca ggtgcacact
5881 tgacggtgag ctacaaggca caacccagtt gctcccatct ggcatctgtg cgttcagagg
5941 acgggtgaca gcaggaactg acaatcctga caagtggcac atgcaactgc aaaacctcaa
6001 tggtacaaca tatgacccaa ctgatgatgt gccagcccca ctgggtacac ctgacttcaa
6061 gggcgtcgtg tttggaatgg caagccaaag aaatgtgggt aacgatgcgc ccggctcaac
6121 caggtcccat gaggcggtaa tttcaaccta cagccccaga tttgttccaa aattaggctc
6181 tgtcaatttt aaaagtaatg atgatgattt ccaattgcag ccaacaagat tcacaccagt
6241 gggcattaat gatgatggcg accacccgtt tagacaatgg gaattgccag actattcagg
6301 ggtgcttacc ttgaatatga accttgcccc cccggttgct ccaaatttcc ctggtgaaca
6361 actattattc ttcagatctt ctgtgccatg ttcaggaggt tacaaccaag gtattataga
6421 ttgtcttatc ccccaagaat ggatccaaca cttctaccag gaatcagcac cttctcagtc
6481 agacgtggcc ctgatcaggt acgtcaaccc cgacacgggt cgcacactgt ttgaggcaaa
6541 attgcataga tctggctata tcactgtggc tcactctgga gactatcctc ttgttgttcc
6601 ggctaatgga tactttagat ttgactcttg ggtaaatcag ttttactcac tcgccccaat
6661 gggaactggg aatgggcgaa ggagggctca gtaatggctg gagctttcat tgcaggattg
6721 gcgggtgaca tgctcacgtc atccgtgggc tccctggtga acgcaggggc aaatgccatc
6781 aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt tcaacatgac
6841 aaagagatgc tccaagcgca ggtgaatgca accaagcagc tgcaatctga gatgatagcc
6901 ctaaaacagg ggattttggc cgcaggcggc ttttccccca ctgatgcagc gaggggggcc
6961 atcggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatattg ggctcccaat
7021 tccacaaaga caactggtta ttcggggcaa ttcacctctt cacctgtgca catgcccagc
7081 ccgagtgctc cacaatcaaa acccgcaaag cccaggtctc taggttcctc ttcttcttct
7141 agtagtgttt atagtatgtc tacccaatta acttctctaa catctggctc ttctagtaat
7201 gctccttctg cttctacaaa attgacaaat ttaagctccg gctcctctca aaacagaaca
7261 gcagagtggg tgaaccaaca gagaagtctc agccctttca tgagtggcgc actcaatata
7321 tcacatgtca cgccaccttc aagtagggcc tccagttctg ggacggtctc aaccgtgccc
7381 aaggaggttt tggactcctg gacatctgca tttaacacac gcagacagcc gctcttcgca
7441 cacctcagag tgagggggga gtcacgtgtt tagtgaaaag aaacaattgg c
//