Typing tool
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Typing tool
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Complete norovirus genomes
| LC939691 | GII.17 | |
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| GII.PNA6 |
ORF1: 1..5082
ORF2: 5063..6676
ORF3: 6676..7446
LOCUS LC939691 7453 bp RNA linear VRL 24-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY1796/2024/JP RNA, nearly complete
genome.
ACCESSION LC939691
VERSION LC939691.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7453)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 32.23x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7453
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY1796/2024/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan: Tokyo"
/collection_date="2024-01"
CDS <1..5082
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BIB40816.1"
/translation="AAVAGKNNNNDNAKSSSDSLFSNMSVSFKKALGARPKQPPPGET
KQQTKPPRPPTPELVKKIPPPPPNGEDEPIVTFKREEGVSGLPDLTTVRRPDVQNTAY
SVPPLSLREVGEAKEPLPGAILEMWDGEIYHYGLYVERGHVLGVHKPPAAVSIARIEL
TPLSLYWRVVYTPQYLISPDTLKNLDGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTKFFRPYQEWNRKPLPTMDEPKIKKVANALLCALSSLFTRPIKDIIGKLRPLNI
LNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAD
ELAMVRAIEDAVLDLEAIENNHMTALLKDRDSLATYMKTLDLEEAKARKLSTKSSSPD
IVGTINALLARIAAARSLVHKAKEELSGRQRPVVVMISGRPGIGKTHLARELAKKIAT
SLAGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPISDALRLQELADTCTLTLNC
DRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDVEKAKRDFP
GQPDMWKEHYRPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKSLTVGSLIARATGLLHE
RMDEFEFQGPELTTFNFDRNKIVAFRQLAAENKYGMMDTLRVGNQLKNVKTMSELKQA
IKNITIKKCQIVYGGCTYTMESDGHGKVTVDKVQSAVVQTNNELSGALHHLRSARIRY
YVKCFQEAVYSILQIAGAAFVTSRIVRRMNISNLWSKPPVEESDESENDGGCPKPRDE
DEITIDSRDIKSEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEELAIARATDEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVTGSEIR
KRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSIWSRIVSFGSGWGFWVSPSLFITS
THVIPKGITEAFGVPISQIQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEGTVATIL
VKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPK
LSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKQPN
PSVLEAAKQTIINVLEQTIDPPQRWTYAQACASLDKTTSSGHPHHVRKNDYWSGESFT
GKLADQASKANLMYEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRC
ARAFGGLMDELKAHCITLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRA
VLAAALEIMVRFSAEPNLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSI
SHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKP
TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQIYWTRGPNHEDPN
ETMIPHAQRPVQLMALLGESSLHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5063..6676
/codon_start=1
/product="capsid protein VP1"
/protein_id="BIB40817.1"
/translation="MKMASNDAAPSNDGATGLVPEINHETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPAQRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTISELTNSRFPAPIDSLFTAQNNNLNVQCQNGRCTLDGELQGTT
QLLPSGICAFRGKITADVHGQHNDRWHMQLTNLNGTPFDPTEDVPAPLGSPDFTGLLY
GVASQRNPDNSTRAHEVVISTTSTQFVPKLGSINFGSESTDFQTNQPTKFTPVGIKME
DGHDFDQWTLPKYSGHLTLNMNLAPPIAPNFPGEQLLFFRSNVPCAGGINAGIIDCLI
PQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVPA
NGYFRFDSWVNQFYSLAPMGTGNGRRRLQ"
CDS 6676..7446
/codon_start=1
/product="capsid protein VP2"
/protein_id="BIB40818.1"
/translation="MAGAFIAGLAGDMLTNAVGSLANAGANAITQKIDFENNKQLQSA
SFQHDKDMLQAQVAATKQLQADMIAIKQGILTAGGFSPTDAARGAVGAPMTKVLDWSG
TRYWAPNSTKTTSYSGQFTSTPVHMPVKQPTPVRKTQPPPSSSGSVYSLSTQSTSLPA
SSSSSSVSSSSTQSTKLSSVSSMDRTANWVNQQRSLSPYMSGALNISHVTPPSSRASS
SGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGEPRV"
ORIGIN
1 gctgccgttg ctggcaaaaa caacaacaac gacaacgcaa aatcttcaag tgacagcttg
61 ttttctaaca tgtctgtctc ttttaagaaa gccctcgggg cgcggcctaa acagccgccc
121 ccgggagaaa caaaacaaca aactaaacca ccaagaccac cgacaccgga attggtgaaa
181 aagataccac cacccccgcc taacggtgag gatgaaccaa tagtgacctt caaacgtgag
241 gagggcgtgt ctgggttgcc tgacctaaca actgtcaggc ggccagacgt gcaaaacaca
301 gcttacagtg ttcctccact cagcctgagg gaggttggtg aagctaaaga gccactgcct
361 ggtgccattt tggaaatgtg ggatggtgaa atctaccact atgggttgta tgtggagcgt
421 ggtcacgtgc ttggggtgca caagccacct gctgcagtga gtatcgctag gattgaattg
481 acacctttat cattatattg gagggtggtt tacacccccc agtatttgat atccccagac
541 actctgaaga acctggatgg tgaatcattt ccttacactg catttgacaa caactgctac
601 gccttctgct gttgggtcct cgacctcaat gactcatggc ttagcagaag aatgatccag
661 cgaaccacta agttctttag gccttatcaa gagtggaaca gaaagcccct gccaaccatg
721 gatgagccca agatcaagaa ggttgcaaat gccttgttat gtgcactctc ttcgctcttc
781 accaggccaa tcaaagatat tattggaaaa ctcagaccat tgaacattct caacatactt
841 gctacctgtg attggacctt cgcaggcatt gtggaatcca tgatccttct agctgaactt
901 ttcggggtgt tctggacgcc cccagatgtg tctgctatga ttgccccctt actcggtgat
961 tacgagatgc aaggccccga agacctggcc gtcgagctcg tacccgtggt gatgggggga
1021 ataggcttgg tgctcggatt caccaaggaa aagatcggca agatgctatc gtcagctgct
1081 tctacactca gagcctgcaa agatttaggt gcctatggac tggagatact caaactagtc
1141 atgaaatggt ttttcccaaa gaaagaggag gccgacgagc tagctatggt gagggctata
1201 gaagacgctg tgttggatct ggaggcaata gaaaacaacc acatgacagc cctcctcaaa
1261 gacagggaca gcttggcaac atatatgaag acccttgacc tagaagaggc aaaagcaaga
1321 aaactctcca ccaaatcttc ttctcctgat attgtgggta caataaatgc actattggca
1381 aggattgcag cagccagatc actggtgcac aaagcaaagg aggaattgtc aggaagacag
1441 aggcctgtag tggtgatgat atctggaaga ccgggcatag gaaagaccca cctcgcccgg
1501 gagctggcca agaagattgc cacgtcacta gcaggtgacc agagagtagg gttagtgccc
1561 agaaatggtg tggaccactg ggacgcctac aagggggaga gagtggtgtt gtgggacgat
1621 tatggcatga gcaatccaat atcagatgca ctgagactcc aggagctggc cgacacctgc
1681 acactgaccc tgaactgtga caggatcgaa aacaaaggaa aggtgtttga cagcgatgcc
1741 ataattataa caactaacct tgcaaacccc gcgccgctgg actacgtcaa cttcgaagcc
1801 tgttccaggc gaatagactt ccttgtgtat gcagatgcac cagacgtaga aaaggccaag
1861 cgcgactttc ctgggcagcc agacatgtgg aaagaacact acagaccaga cttctcacac
1921 atcaaactcc aacttgcacc acaagggggc tttgacaaga atggcaacac tccgcatggt
1981 aaaggtgtca tgaaatcctt aacagtgggt tcactgattg ccagggccac cggactactc
2041 cacgaaagaa tggatgagtt cgaattccag ggtcccgaat tgacaacttt caatttcgat
2101 cgcaacaaga tcgttgcctt cagacaattg gcagctgaga acaagtacgg catgatggac
2161 accctaagag ttggcaacca actgaagaat gttaagacca tgagtgaact taagcaggcc
2221 atcaagaata ttaccatcaa gaagtgtcag atagtgtatg gtggatgcac ctacacgatg
2281 gagtctgatg ggcatggcaa ggtgacagtt gataaggttc aaagtgcagt ggttcaaacc
2341 aacaatgagc tttcaggagc tctacaccac cttaggtctg caagaataag gtactatgtc
2401 aaatgtttcc aagaggcagt ctactccata ctacaaattg ctggtgcagc attcgtcacc
2461 tcacgcatcg tgaggcgcat gaacatctca aacctctggt caaagccacc tgttgaagag
2521 agtgatgaat ctgagaatga tggagggtgc cccaaaccta gagacgagga tgagatcaca
2581 atcgactcta gggacataaa gtcagaagga aagaaaggca agaacaagac tggccgtggt
2641 aagaaacata cggctttctc tagcaaggga ctcagtgatg aagagtatga tgagtacaag
2701 agaatcagag aagaaaggaa tggcaaatac tcaatagagg agtatcttca agacagggac
2761 aggtactatg aagagcttgc cattgccagg gccactgatg aggacttctg tgaggaggag
2821 gaagtgaaaa tccgccaaag gatcttccgg cccaccagga aacagcggaa agaagaaagg
2881 gccacgctgg gactcgtcac agggtcagaa atcaggaaaa gaaacccaga tgatttcaaa
2941 ccaaaaggaa aattgtgggc tgatgacaat aggagtgtgg actacaatga aaggatagac
3001 tttgaagcac ccccgagcat ttggtctagg atagtcagct ttggttcagg atgggggttc
3061 tgggtttccc caagtctctt cataacatca acacatgtga taccgaaagg tatcacggag
3121 gcctttggag taccaatcag ccagatccag atccataaat caggggagtt ttgccgtctg
3181 cggtttccaa aaccaatcag gacagatgta agtggaatga tcttggagga gggagctccc
3241 gagggaacag ttgcaaccat ccttgtcaaa cggccaactg gagagctgat gcccctcgca
3301 gccaggatgg gaacccatgc cacaatgaaa atccaaggaa ggacggttgg cggccaaatg
3361 ggcatgctcc tgacaggctc aaacgctaag agcatggacc tcggaacaac accaggtgac
3421 tgtgggtgtc cttacatata caagagaggc aatgactttg tggttatcgg tgtgcacacg
3481 gcagcagcac gcggaggcaa cacagtcatt tgtgccacac aaggaagtga aggtgaggcc
3541 actcttgagg gaggtgacaa caaaggaact tactgtgggg ctcccatttt aggacctggc
3601 aatgcaccaa aattgagcac gaaaacaaaa ttctggagat cttccaacgc accactccca
3661 ccaggtacct atgaaccagc ctaccttggt gggaaggatc cccgcgtaaa gggaggccca
3721 tctctgcaac aggttatgag agatcaacta aaacccttca cagagcccag gggaaagcaa
3781 ccaaacccaa gtgttcttga agcagccaaa caaaccataa tcaatgttct tgaacaaacc
3841 attgatcctc cccagagatg gacttacgct caggcttgtg catctcttga caaaacaact
3901 tccagcgggc acccccatca cgtccgcaag aatgactact ggagtggtga gtcttttaca
3961 ggaaaattgg cagatcaagc ttcaaaggca aacctcatgt acgaggaggg taaacacatg
4021 acaccagtgt acactgcagc actcaaagat gagctagtga agactgacaa gatctatgga
4081 aagattaaga aaagactctt gtggggttcg gacctttcaa ccatgatacg gtgtgccagg
4141 gcatttggtg gcttgatgga tgaactcaaa gcacactgta taaccctccc tgtaagagtt
4201 ggcatgaaca tgaatgagga cgggcccata atatttgaga aacactccag gtacaggtac
4261 cactatgatg ctgactactc tcgttgggac tccacacaac aaagagcagt gttggcagca
4321 gcacttgaaa tcatggtgag gttctcagca gaaccaaatt tagcacaaat agtggctgag
4381 gacttgctgg caccaagtgt ggttgacgtg ggtgacttca aaatcacaat aaatgagggt
4441 ttaccctctg gtgtgccttg cacgtcacaa tggaattcca tctcccactg gctactcaca
4501 ctgtgtgccc tgtcagaagt cactggttta ggtcctgaca tcatacaagc aaattccatg
4561 tactctttct atggtgatga tgaaattgtg agcactgaca tcaaacttga cccagagaaa
4621 ttgactgcaa aacttaaaga atatggtctc aaacccaccc gtcccgacaa gactgagggg
4681 ccattggtga ttagtgaaga tctgaacgga ctgacattcc tccggcgaac ggtgacccga
4741 gatccagcag gctggtttgg gaagttagac caaagctcca tactcagaca aatttactgg
4801 accagaggac caaatcatga agaccccaat gagactatga taccacatgc acaaaggcct
4861 gttcagctca tggcattgct gggggagtcc tccttgcatg gaccttcatt ctatagcaaa
4921 atcagcaaat tggttatatc tgaacttaaa gaggggggaa tggattttta tgtgcccaga
4981 caagaaccca tgttcagatg gatgagattc tcagatttga gcacatggga gggcgatcgc
5041 aatctggctc ccagttttgt gaatgaagat ggcgtcgaat gacgccgctc catctaatga
5101 tggtgctacg ggcctcgtcc cagagatcaa ccacgagacc cttcccctgg aaccagtggc
5161 aggcgcagca attgccgcac ctgttactgg acaaaacaac ataattgatc cctggataag
5221 aacaaatttt gtacaagcac ccaacggaga gttcacagtt tcacccagaa actctcccgg
5281 agaaattctt ctaaatttgg agttaggtcc tgatttgaac ccttatttgg cacacctgtc
5341 tagaatgtac aatgggtatg ctggtggtgt ggaagtccaa gttctcctgg cggggaatgc
5401 gttcaccgca ggaaagatcc tcttcgctgc cgtgccacca aacttccccg ttgaattctt
5461 gagccccgcc caaattacca tgttgccaca tttgattgtt gatgttagaa cccttgaacc
5521 tatcatgata ccactccctg atgttaggaa caccttcttt cactacagta atcaacctgc
5581 ccagcgcatg cgcctagtgg ccatgttata tactcctttg agatctaatg gttctggtga
5641 tgatgttttc actgtctctt gcagggttct tactagaccc accccagatt ttgagttcac
5701 atacttagtc cctccttcag tagagtctaa aactaaaccc ttttctctgc ctatcctgac
5761 tatttctgag cttactaact ctagattccc tgcacctata gattcactgt ttacagccca
5821 aaacaacaat ctcaatgtcc agtgccaaaa tggtaggtgc acgctagatg gtgagttgca
5881 agggactacc cagctgctgc catcgggcat atgtgctttc agaggcaaaa taacagcaga
5941 tgtgcacggc cagcacaatg acagatggca catgcaattg acaaatctca acgggacccc
6001 atttgatcca acagaggatg tgccagcccc cctgggctcc ccagacttca caggtcttct
6061 ctacggggta gccagtcaga ggaaccctga caactccact cgggcacatg aggtcgtgat
6121 ctccacgacc agcacacagt tcgtgcccaa actgggatca atcaactttg gaagtgagag
6181 cactgatttc caaacaaatc aaccaaccaa gttcacacca gttggaatca aaatggaaga
6241 tgggcatgac tttgaccagt ggaccttgcc caagtattca ggccatttaa ctctcaacat
6301 gaatctagcc ccgcctattg ccccaaattt ccctggtgaa caactgctat tcttcagatc
6361 aaatgtccct tgtgctggcg gtatcaacgc tggtattatt gattgtctga tacctcaaga
6421 atggatacaa cacttctacc aagaatctgc accatctcaa tctgatgtag ccctaatcag
6481 gtatgtcaac cctgacacag ggcgcacact ctttgaggca aaacttcaca gatctggcta
6541 cattactgtt gctcattcag gtgattatcc tcttgttgtc cccgctaatg gatacttcag
6601 atttgactct tgggtaaacc agttttactc acttgccccc atgggaacag ggaacgggcg
6661 cagacggttg cagtaatggc tggagctttt atagcaggtc ttgcaggtga catgctcacc
6721 aatgcagtcg gctcactggc aaacgccggg gccaatgcta taacccagaa gatagatttt
6781 gagaacaaca aacagctcca atctgcctcc ttccaacatg acaaagacat gctccaagcg
6841 caagtggctg caaccaaaca gctacaggct gacatgatcg ccatcaagca ggggatactg
6901 accgctggcg gcttttcccc cactgatgcg gcgagaggag cagtgggtgc acccatgacc
6961 aaggtcctag attggtctgg cacccgctac tgggcaccaa attccacaaa aacaaccagt
7021 tactcagggc aattcacatc aacgcctgtg catatgcctg tcaaacagcc cactcccgtc
7081 agaaagaccc agccccctcc ttcttcttct ggcagtgtct atagcctttc tacacagagc
7141 acttctttgc ctgcatcttc ttctagttct tctgtttcct cttcttcaac acaatcaaca
7201 aaattaagtt cagtttcctc tatggataga acagcaaatt gggtgaatca gcagagaagc
7261 cttagcccct acatgagtgg tgctcttaac atctctcatg taacacctcc atcaagcagg
7321 gcttcaagtt cgggaacagt ctcaactgta cccaaagaag ttttggactc ctggacgtct
7381 gcattcaaca cacgcagaca gccgctcttc gcacacctca gagtgagggg ggagccacga
7441 gtttagtgaa aag
//