Typing tool
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Typing tool
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Complete norovirus genomes
| LC939689 | GII.17 | |
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| GII.P17 |
ORF1: 1..5099
ORF2: 5080..6702
ORF3: 6702..7481
LOCUS LC939689 7530 bp RNA linear VRL 24-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY609/2022/JP RNA, nearly complete
genome.
ACCESSION LC939689
VERSION LC939689.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7530)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 41.30x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7530
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY609/2022/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan: Tokyo"
/collection_date="2022-07"
CDS <1..5099
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BIB40810.1"
/translation="SNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQP
PPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDA
QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL
AKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKF
RPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK
SASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA
KKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA
KRDFPGQPDMWKDHFRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS
GLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD
ELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRS
ARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCP
KPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GTEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS
LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT
VVSILIKRTTGELMPLAVRMGTHATMRIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGP
GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWS
GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN
HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5080..6702
/codon_start=1
/product="capsid protein VP1"
/protein_id="BIB40811.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRINFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGIN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6702..7481
/codon_start=1
/product="capsid protein VP2"
/protein_id="BIB40812.1"
/translation="MAGAFIAGLAGDLLTSSVGSLVNAGANAINQKVDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSPVPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cgtctaacga cgcttccgct gccgttgctg gcaaaaacaa caacaacgac aaggaaaaat
61 cttcaagtga cagcttgttt gctaatatgt ctgtcacttt taagaaagcc ctcggggcgc
121 ggtctaaaca accgcccccg ggagaaacaa aacaaataca aaaaccacca agaccaccga
181 caccggaatt ggtgaagaga atacctccac ccccacccaa tggcgaggat gaaccaggga
241 tagtgtacaa ggtgggagag ggtgtgtctg ggctgcccga cctaacaact gtggcacaac
301 ctgacgcaca aaacacagct tacagtgttc ccccacttag ccagagagaa gtcggcgaag
361 ctaaagaacc gctgcctggc tccattctgg aaatgtggga tggtgagatc taccactatg
421 ggctgtatgt tgagcggggg catgtgctcg gagtacacaa accacctgct gcaataagcc
481 ttgccaaaat tgaaataaca ccgctgtctc tctactggag agtggtctac actccccagt
541 atttgataga tccaggaact cttaagaact tgagtggaga gactttccca tacacggcct
601 ttgacaataa ctgctatgcc ttctgttgct gggtcctaga cctcaacgac tcctggctta
661 gcaggagaat gatccaaaga acgactggat ttttcaaacc ttatcaggat tggaacagaa
721 aacccttacc aaccatggat gaaccgaaaa tcaagaaggc cgcgaatgct gtcctatgcg
781 ctctctcctc actcttcact agacccatta aggacatcat tgggaagttt agaccactga
841 acattcttaa tatactggca acctgcgatt ggacttttgc aggcatagtg gaatccttga
901 tccttcttgc tgaactcttt ggggtgttct ggacaccccc agatgtgtct gcgatgattg
961 ctcccttact cggcgactac gagatgcaag gccccgaaga cctggctgtg gaacttgtac
1021 ccgtggtgat gggaggaata ggtttggtgt taggattcac caaagaaaag atcggcaaga
1081 tgctttcatc agctgcgacc acacttaggg cctgcaagga tttaggatct tatggattgg
1141 agatactcaa attggtcatg aagtggttct tccccaaaaa ggaggaggct aacgaactag
1201 ccatggtgag ggccattgag gatgcagtcc tggatttgga ggcaatagaa aacaatcaca
1261 tgaccaccct tctcaaggat aaagacagcc tggccacata catgaggact cttgacttgg
1321 aagaagagaa agcaaggaaa ctgtcgacca aatcggcgtc acctgacatc gtgggtacaa
1381 taaacgcact gctggctagg atagcagccg ccagatcact ggtccacaag gctaaggagg
1441 agctctcgag cagacagaga cctgttgttg taatgatatc aggtagacca ggtataggaa
1501 agacccatct ggccagagag ctagccaaga aagtcgcgtc aacactgtca ggcgaccaaa
1561 gaatcggact ggtacctagg aatggtgtcg accattggga cgcctacaag ggagaaaggg
1621 tggtcctgtg ggatgattat ggtatgagca accctataca ggacgcactg aggctccaag
1681 aattggctga cacctgtcct ctgaccctaa attgtgatag gattgaaaac aaaggaaaag
1741 tgttcgacag tgacgccata attataacaa ccaaccttgc aaacccagca ccactagact
1801 atgtcaactt tgaggcctgc tctagacgca tagacttctt ggtgtatgca gacgcacctg
1861 acattgagaa ggctaagcgt gacttccctg gccaaccaga tatgtggaaa gaccatttca
1921 gaccagactt cacacacatt aaacttcagc tggcaccaca gggaggtttt gacaaaaatg
1981 gcaacacccc acatggcaaa ggtgtggtaa agtccctgac gattggttcc ctgatcgcca
2041 gggcctccgg cttgctccac gagagaatgg atgagttcga gctccaaggc tctgacctgc
2101 caaccttcaa ttttgaccgc aataaagtcg ctgccttcag acaattggca gctgaaaaca
2161 aatatggtct tatggacaca ttgagggtcg gcaaccaact gaaaagtgtt aagaccctgg
2221 atgagctgaa gcaggccata aagaacatca gtatcaagaa gtgtcaaata gtgtataatg
2281 gatgcaccta tactatggaa tctgatggga ggggcaaggt tgtggttgaa aaggtacaaa
2341 acgcaacagt tcaaaccaac aatgaactcg taggggcact ccaccacctg agatctgcaa
2401 ggataagata ctatgttaaa tgtttccaag aagccattta ctctctactc caaattgctg
2461 gcgcagcctt tgtcacctca cgcatcgtga ggcgcatgaa catatcaaac ctctggtcga
2521 agccacccat tgaggagggt gatgagcctg aggacagagg agggtgcccc aagcccaggg
2581 atgaagatga cctcactatt gactctagag acattaaagt ggaagggaag aagggcaaga
2641 acaagtctgg ccggggcaag aaacacacag ccttttcttc caagggcctc agtgatgaag
2701 agtacgatga gtacaagaga atcagagagg agaggaatgg caaatactca atagaggaat
2761 acctccaaga cagggacagg tactatgaag agcttgccat tgctaaggcc actgaggaag
2821 acttctgtga agaggaggag atcaaaatcc gccagagaat cttccgaccc accaggaagc
2881 aacggaaaga ggaaagggcc acgctcgggc ttgtcacagg aacggaaatc agaaagagga
2941 atccagatga ttttaaacca aaaggaaaat tgtgggctga tgacaacagg agcgtggatt
3001 acaatgagag gatagatttt gaggctcccc cgagtgtttg gtctaggata gtcaactttg
3061 gcacaggctg gggattctgg gtctctccaa gtctctttat aacttcaaca cacgtcatac
3121 caaaaggaat cactgaggcc tttggagtgc ccataaacca aatccaaatc cacaaatctg
3181 gagaattttg ccgcttgcgg tttccaaagc caattagacc agacgtgagt gggatgatct
3241 tggaagaggg cgcccctgaa ggcactgttg tgtctattct catcaaaagg acaacagggg
3301 agctgatgcc ccttgcagtc agaatgggga ctcatgccac aatgagaatc caaggtagaa
3361 cggtgggtgg tcagatgggt atgcttctca ctggctcaaa tgctaaaggc atggatctag
3421 gcacaacgcc aggtgactgc ggatgtccat acatatacaa aaggggcaat gaccttgtgg
3481 tcattggggt gcacactgca gcagctcgtg gaggcaacac ggtcatatgt gccacacagg
3541 gaagtgaggg tgaagccact cttgaaggag atgacaataa gggtacctat tgtggagccc
3601 ccattttggg acctggcaat gcaccaaaat tgagcacaaa gacaaaattc tggagatcct
3661 ctaacgcacc gcttccccca ggtacttatg aaccagcata ccttggtggg agggacccgc
3721 gcgtgaaggg aggtccatct ctgcaacaag ttatgagaga tcaactcaaa ccttttacag
3781 agcccagagg gaagccacca aacccaaatg tcttagagtc agcaaagaag actatcatca
3841 atgttctgga acagaccatt gaccctcctc aaaagtggtc atatgcccaa gcttgtgcat
3901 ccctcgacaa gacaacctcc agtggatacc cgcaccacgt tcggaagaat gactactgga
3961 gtggtgaatc cttcacagga aaacttgcag atcaggcttc aaaagcaaat ctcatgtatg
4021 aggaaggcaa gcacatgcaa ccagtttaca ccgcagcact caaagacgag ctcgtgaaaa
4081 ctgacaaaat ttatggcaaa atcaagaaaa gactcctatg gggctctgac ctctccacaa
4141 tgattcgatg cgccagagca tttggtggtc tcatggatga actcaaagca aattgtatca
4201 cactacctat cagagttggt atgaatatga atgaagatgg tcccataata ttcgagaaac
4261 actccaggta caggtaccac tatgatgctg attactcccg ctgggactcc acacaacagc
4321 gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag ccacagctgg
4381 cacaaatagt ggcagaggac ctgctgtcac caagtgtggt tgatgtgggc gatttcaaaa
4441 tcgctatcaa tgaaggccta ccatctggcg tgccttgcac ctcacaatgg aattctattg
4501 cccactggtt actcaccttg tgtgcccttt ctgaagtgac gggattaggt cctgacatca
4561 ttcaagctaa ctccatgtac tctttctatg gtgatgatga gattgtgagc acagacataa
4621 aattggaccc agagaaatta accgcaaagc tcaaagaata tggccttaaa cccactcggc
4681 ccgacaaaac tgaggggccg ttggtaatta gtgaggacct gaatgggtta actttccttc
4741 gccggacagt cacccgtgat ccagcaggtt ggtttggaaa gttggaccaa aactccatcc
4801 tcaggcagtt gtactggaca agaggaccca accatgaaga ccccagtgag accatgatac
4861 cacacgcaca aagacctgtg cagctcatgg cactactagg agagtcctct ctacacggac
4921 cctcatttta cagcaaggtt agcaagttag tcatatctga acttaaagag ggaggaatgg
4981 atttttatgt gcccagacaa gaatcaatgt tcagatggat gaggttctca gatctaagca
5041 catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgaatgac
5101 gccgctccat ctaatgatgg tgctgctggt ctcgtaccag agggcaacaa cgagaccctt
5161 cccctagaac cagttgcggg cgcagctata gccgcacccg tcactggcca aaataatata
5221 attgacccct ggattagaat aaattttgtg caagcaccaa atggagagtt cacagtgtca
5281 cccagaaact ctcctggaga aattttatta aatttagagt tgggccctga tttgaaccct
5341 tatttggctc atttgtcaag gatgtacaat gggtatgctg gtggagtgga agttcaggtt
5401 ctcctggcag ggaacgcgtt cactgccgga aagatcctct tcgccgccgt cccgccaaat
5461 ttcccagtgg aattcttaag cccagcccag atcacaatgc tcccacactt aatagtagat
5521 gttaggactc ttgaaccaat catgatccca ctccctgatg ttaggaatac attcttccat
5581 tataataatc agcctaacag ccgcatgaga ttagtggcta tgctctatac cccactcaga
5641 tctaatggtt caggtgatga cgtctttact gtctcttgca gggttttgac taggcctact
5701 cctgattttg agttcactta tttagtgcca ccttctgttg aatctaaaac caagcctttt
5761 tccctaccta ttttaaccct ttctgagctc acaaattcga ggtttccagt ccccatcgat
5821 tcgcttttta ccgcccagaa taatgtgttg caggtgcagt gtcaaaatgg caggtgtaca
5881 cttgatggtg agctacaagg cacaacccag ttgctcccaa ccggcatctg tgcattcaga
5941 ggacgggtga cagcacaaat caaccaacgt gacaggtggc acatgcaact gcaaaacctc
6001 aatggtacaa catatgaccc aactgatgac gtgccagccc cgctgggtac acctgacttc
6061 aagggcgtcg tgtttggaat ggtaagccaa agaaatgtgg gtagtgatgc gcctggctca
6121 accagagccc aacaggcgtg ggtttcaacc tatagccccc aatttgtccc caaattaggt
6181 tctgtcaatc ttagaattag taataatgat gacttccaat tccagccaac aaaattcaca
6241 ccagtgggca tcaatgatga tgatgatgat cacccgttca gacagtggga gctaccaaat
6301 tattcagggg agcttacctt gaacatgaat cttgcccccc cagttgctcc aaattttcct
6361 ggtgaacaat tgttattctt cagatctttc gtgccatgct caggaggtta caaccaaggt
6421 attatagatt gtcttattcc ccaagaatgg atccaacatt tctatcagga atcagcaccc
6481 tcccagtcag acgtggccct aatcaggtat gtcaaccccg atacgggacg tacactgttt
6541 gaagcaaaat tgcacagatc tggttacatt actgtggctc actctggaga ttatcctctt
6601 gttgttccgg ctaatggaca ctttagattt gattcttggg taaatcagtt ttactcactc
6661 gccccaatgg gaactgggaa tgggcgaagg agggctcagt aatggctggg gctttcattg
6721 caggattggc aggcgacttg ctcacgtcat ctgtgggctc ccttgtgaac gcaggggcaa
6781 acgccatcaa ccaaaaggta gactttgaaa acaataaaca actccagtct gcttcctttc
6841 agcatgataa agagatgctc caagcgcagg tgagggcaac caagcagctg caatctgaaa
6901 tgatagccct aaaacagggg gttttggccg caggcggctt ttcccccact gatgcagcaa
6961 ggggatccat tggtgcaccc atgacaaagg tgcttgactg gtctggcact cgatactggg
7021 cgcccaattc cacaaagaca actggctatt cgggacaatt cacctcttca cctgtgcata
7081 tgtctagccc aaatgctcca caatcaaaac ctgcaaagcc taggtctcca gttccttcct
7141 cctcttctag tagtgtttat agtatgtata ctcaatctac tcatttgaca tctggctctt
7201 ctagtaatgc ttcttctgcc tctacaaagt taacaaattt aagctctggc tcctctcaaa
7261 acagaacagc agagtgggtg aatcaacaga gaagtcttag ccctttcatg agtggcgcac
7321 ttaacatctc acatgttacg ccaccctcaa gtagggcttc cagttctggg acggtctcaa
7381 ccgtgcccaa ggaagttttg gactcctgga cgtctgcgtt taacacacac agacagccgc
7441 tcttcgcaca cctcagggtg aggggggagt cacgggttta gtgaaaagaa ataattggct
7501 ataatgtgat ttctttctaa atttggctaa
//