Typing tool
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Typing tool
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Complete norovirus genomes
| LC939686 | GII.17 | |
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| GII.P17 |
ORF1: 1..5092
ORF2: 5073..6695
ORF3: 6695..7474
LOCUS LC939686 7518 bp RNA linear VRL 24-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY2407/2020/JP RNA, nearly complete
genome.
ACCESSION LC939686
VERSION LC939686.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7518)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 37.36x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7518
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY2407/2020/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan: Tokyo"
/collection_date="2020-02"
CDS <1..5092
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BIB40801.1"
/translation="DASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPP
GETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQN
TAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAK
IEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSA
SPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKK
VASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKR
DFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGL
LHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDEL
KQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELAGALHHLRSAR
IRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDGPEDRGGCPKP
RDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAVARATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLF
ITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVV
SILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYMYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGN
APKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGE
SFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTM
IRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYG
LKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHE
DPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5073..6695
/codon_start=1
/product="capsid protein VP1"
/protein_id="BIB40802.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6695..7474
/codon_start=1
/product="capsid protein VP2"
/protein_id="BIB40803.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSSAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cgacgcttcc gctgccgttg ctggcaaaaa caacaacaac gacaaggaaa aatcttcaag
61 tgacagcttg tttgctaaca tgtctgtcac ttttaagaaa gccctcgggg cgcggtctaa
121 acaaccgccc ccgggagaaa caaaacaaat acaaaaacca ccaaggccac cgacaccgga
181 attggtgaag aaaatacctc cacccccacc caatggcgag gatgaaccag ggatagtgta
241 caaggtggga gagggtgtgt ctgggctgcc cgatctaaca actgtggtgc aacccgacgc
301 gcaaaacaca gcttatagtg ttcccccact tagccagaga gaagtcggcg aagctaaaga
361 accactgcct ggctccattc tggaaatgtg ggatggtgag atctaccact atgggctgta
421 tgttgagcgg gggcatgtgc tcggagtaca caaaccacct gctgcaataa gccttgccaa
481 aattgaaata acaccgctgt ctctctactg gagagtggtt tacactcccc agtatttgat
541 agatccaggg actcttaaga acttgagtgg agagactttc ccatacacgg cctttgacaa
601 caactgttat gccttctgtt gttgggtcct agacctcaac gactcctggc ttagcaggag
661 aatgatccaa aggacaactg gattcttcaa accttatcag gattggaata gaaaaccctt
721 accaaccatg gatgaaccga aaatcaagaa ggccgcgaat gctgtcctat gtgctctctc
781 ctcactcttc actagaccca ttaaggacat cattggaaag cttagaccac tgaacattct
841 taatatactg gcaacctgcg attggacttt tgcaggcata gtggaatcct tgatccttct
901 tgctgaactc tttggggtgt tctggacacc cccagatgtg tctgcgatga ttgctccctt
961 actcggtgac tacgagatgc aaggccccga agacctggcc gtggaacttg tgcccgtggt
1021 gatgggagga ataggtttgg tgttaggatt caccaaagaa aagatcggca agatgctttc
1081 atcagctgcg accacactta gggcctgcaa ggatctagga tcttatggat tggagatact
1141 caaactggtc atgaagtggt tcttccccaa gaaggaggag gctaacgaac tagccatggt
1201 gagggccatt gaggatgcag tcctggattt ggaggcaata gaaaacaatc acatgaccac
1261 ccttctcaag gataaagaca gcctggccac atacatgagg actcttgact tggaggaaga
1321 gaaagcaagg aaactgtcaa ccaaatcggc gtcacctgac atcgtgggca caataaacgc
1381 attattggct aggatagcag ccgccaggtc actggtccac aaggctaagg aggagctctc
1441 gagcagacag agacctgttg ttgtaatgat atcaggtaga ccaggtatag gaaagaccca
1501 tctggccaga gagctagcca agaaagttgc gtcaacactg tcaggcgacc aaaggattgg
1561 actggtacct agaaatggcg tcgaccattg ggacgcctac aagggagaaa gggtggttct
1621 gtgggatgat tatggtatga gcaaccctat acaggacgca ctgaggctcc aagaattggc
1681 tgacacctgt cctctgaccc taaattgtga taggattgaa aacaaaggaa aagtgttcga
1741 cagtgatgcc ataattataa caaccaacct tgcaaaccca gcaccactag actatgtcaa
1801 ctttgaggcc tgctctagac gcatagactt cttggtgtat gcagacgcac ctgacattga
1861 gaaggctaag cgtgacttcc ctggccaacc agatatgtgg aaagaccatt tcagaccaga
1921 cttctcacac attaaacttc agctggcacc acagggaggt tttgacaaaa atggcaacac
1981 cccacatggc aaaggtgtgg tgaagtccct gacgattggt tctctgatcg ccagggcctc
2041 cggcttgctc cacgagagaa tggatgaatt cgagctccaa ggctctgacc tgccaacctt
2101 caattttgac cgcaacaaag tcgccgcctt cagacaattg gcagctgaaa acaaatatgg
2161 ccttatggac acactgaggg tcggcaacca actgaaaagt gtcaagaccc tggatgagct
2221 gaagcaggcc ataaagaaca tcagtatcaa gaagtgtcag atagtgtata atggatgcac
2281 ctataccatg gaatctgatg ggaggggcaa ggttgtggtt gaaaaggtac aaaacgcaac
2341 agttcaaacc aacaatgaac ttgcaggggc gctccaccac ctgagatctg caaggataag
2401 atactatgtt aaatgtttcc aagaagccat ttactctcta ctccaaattg ctggtgcagc
2461 cttcgtcacc tcacgcatcg tgaggcgcat gaacatatca aacctttggt cgaagccacc
2521 tatcgaggag ggtgatgggc ctgaagacag aggaggatgc cccaagccca gggatgaaga
2581 tgacctcact attgactcta gagacattaa agtggaaggg aagaagggca agaacaagtc
2641 tggccggggc aagaaacaca cagccttctc ttccaagggc ctcagtgatg aagagtatga
2701 tgagtacaag agaatcagag aggagaggaa tggcaaatac tcaatagagg aatacctcca
2761 agatagggac agatactatg aagagcttgc cgttgctagg gccactgagg aggacttctg
2821 tgaggaggag gagatcaaaa tccgccagag aatcttccga cccaccagga aacagcggaa
2881 agaggaaagg gccacgcttg ggcttgttac agggtcggaa atcagaaaga ggaatccaga
2941 tgacttcaaa ccaaaaggaa aattgtgggc tgatgacaac aggagcgtgg attacaatga
3001 gaggatagat tttgaggctc ccccgagtgt ttggtctagg atagtcaact ttggcacagg
3061 ctggggattc tgggtttctc caagtctctt tataacttca acacacgtca taccaaaagg
3121 aatcactgag gcctttggag tgcccataaa ccaaatccaa attcacaaat ctggagaatt
3181 ttgccgcttg cggtttccaa agccaattag accagacgtg agtgggatga tcttggaaga
3241 gggtgcccct gaaggcactg ttgtgtctat tctcatcaaa aggacaacag gggagctgat
3301 gcctcttgca gtcagaatgg ggactcatgc cacaatgaaa atccaaggta gaacggtggg
3361 tggtcagatg ggtatgcttc tcactggatc aaatgctaaa agcatggatc taggcacaac
3421 gccaggagac tgcggatgtc catacatgta caaaaggggc aatgaccttg tggtcattgg
3481 ggtgcacact gcagcagctc gtggaggcaa cacggtcata tgcgccacac agggaagtga
3541 aggtgaagcc actcttgaag gaggtgacaa caagggtacc tattgtggag cccccatttt
3601 gggacctggc aatgcaccaa aattgagcac aaagacaaaa ttctggagat cctctaacgc
3661 accgcttcca ccaggcactt atgaaccagc ataccttggt gggagagacc cgcgtgtgaa
3721 gggaggccca tctctgcaac aagttatgag agaccaactt aagcctttta cagaacccag
3781 agggaagcca ccaaacccaa atgtcttaga gtcagcaaag aagactatca tcaatgttct
3841 ggaacaaacc attgaccccc ctcaaaagtg gtcatatgcc caagcttgtg catccctcga
3901 caagacaacc tccagtggat acccgcacca cgtccggaag aatgactatt ggagtggtga
3961 atccttcaca ggaaaacttg cagatcaggc ttcaaaagca aatctcatgt atgaggaagg
4021 caagcacatg caaccagttt acaccgcagc actcaaagac gagctcgtga aaactgacaa
4081 aatttatgga aaaatcaaga aaagactcct gtggggttct gacctctcca caatgattcg
4141 atgcgccaga gcatttggtg gtctcatgga tgaattcaaa gcaaattgta tcacactccc
4201 tatcagggtt ggtatgaata tgaatgaaga tggtcccata atatttgaga aacactccag
4261 gtacaggtac cactatgatg ctgattactc ccgctgggac tccacacaac agcgggcagt
4321 gctggaagcg gcactcgaaa tcatggtgag attttctgct gagccacagc tggcacaaat
4381 agtggcagag gacctgcttt caccaagtgt ggttgatgtg ggcgatttca aaatcgctat
4441 caatgaaggt ctaccatctg gcgtgccttg cacctcacaa tggaattcta ttgcccactg
4501 gttactcacc ttgtgtgccc tttctgaagt gacaggatta ggtcctgaca tcatacaagc
4561 taactccatg tactctttct atggtgatga tgagattgtg agcacagaca taaaattgga
4621 cccagagaaa ctgaccgcaa agctcaaaga atacggcctc aaacccactc ggcccgacaa
4681 gactgagggg ccgttggtga ttagtgagga cctgaatggg ttgactttcc tccgccgaac
4741 agtcacccgt gatccagcag gttggtttgg aaagttggac caaaactcca tcctcaggca
4801 gttgtactgg acaagaggac ccaaccatga agaccccagt gagaccatga taccacatgc
4861 acagagacct gtgcagctca tggcactact aggagaatcc tccctacatg gaccctcatt
4921 ttacagcaag gttagcaaat tagtcatatc tgaacttaaa gagggaggaa tggattttta
4981 tgtgcccaga caggagtcaa tgttcagatg gatgaggttc tcagatctaa gcacatggga
5041 gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat gacgccgctc
5101 catctaatga tggtgctgct ggtctcgtac cagagggcaa caacgagacc cttcccctag
5161 aaccagttgc gggcgcagct atagccgcac ccgtcactgg ccaaaataac ataattgacc
5221 cctggattag aacaaatttt gtgcaagcac caaatggaga gttcacagtg tcacccagaa
5281 actctcctgg agaaatttta ttaaacttgg agttgggccc tgatttgaac ccttatttgg
5341 ctcatttgtc aaggatgtac aatgggtatg ctggtggagt ggaagttcag gttctcctgg
5401 cagggaatgc gttcactgcc ggaaagatcc tattcgccgc cgtcccgcca aatttcccag
5461 tggaattctt aagcccagcc cagatcacaa tgctcccaca tttaatagta gatgttagga
5521 ctcttgaacc aattatgatc ccactccctg atgttaggaa cacattcttc cattatagta
5581 accagcctaa cagccgcatg agattagtgg ctatgctcta taccccactc agatctaatg
5641 gctcaggtga tgatgtcttt actgtctctt gcagggtttt gactaggcct actcctgatt
5701 ttgagttcac ttatttagtg ccaccttctg ttgaatctaa aactaagcct ttctccttac
5761 ctattttaac cctttctgag ctcacaaatt cgaggttccc agtccccatc gattcgcttt
5821 tcaccgccca gaataatgtg ttgcaggtgc agtgtcaaaa tggcaggtgt acacttgatg
5881 gtgagttaca aggcacaacc cagttgctcc catctggcat ctgtgcattc agaggacggg
5941 tgacagcaca aattaaccaa cgtgacaggt ggcacatgca actgcaaaac cttaatggta
6001 caacatacga cccaactgat gatgtgccag ccccgctggg tacacctgac ttcaagggcg
6061 tcgtgtttgg gatggtaagc caaagaaatg tgggtagtga tgcgcctggc tcaaccagag
6121 cccaacaggc gtgggtttca acctatagcc cccaatttgt ccccaaatta ggttctgtca
6181 atcttagaat tagtgacaat gatgatttcc aattccagcc gacaaaattc acaccagtgg
6241 gcgtcaatga tgacgatgat ggccacccgt tcagacaatg ggaactgcca aactattcag
6301 gggagcttac cttgaatatg aatcttgccc ccccagttgc tccaaatttt cctggtgaac
6361 aattgttatt cttcagatct ttcgtgccat gctcaggagg ttacaaccaa ggtattatag
6421 attgtctcat tccccaagaa tggatccaac acttctatca ggaatcagca ccctcccagt
6481 cagacgtggc cctaatcagg tatgtcaacc ccgatacggg acgtacactg tttgaagcaa
6541 aattgcatag atctggttat attactgtgg cccactctgg agactatcct cttgttgttc
6601 cggctaatgg acactttaga tttgattctt gggtaaatca gttttactca ctcgccccaa
6661 tgggaactgg gaatgggcgt aggagggctc agtaatggct ggggctttca ttgcaggatt
6721 ggcaggcgac atgctcacgt catctgtggg ctcccttgtg aacgcagggg caaacgccat
6781 caaccaaaag atagattttg aaaacaacaa acaactccag tctgcttcct ttcagcatga
6841 taaagagatg ctccaagcgc aggtgagggc aaccaagcag ctacaatctg aaatgatagc
6901 cctaaaacag ggggttttgg ccgcaggcgg cttttccccc actgatgcag caaggggatc
6961 cattggtgca cccatgacaa aggtgcttga ctggtctggc actcgatact gggcgcccaa
7021 ttccacaaag acaactggct attcgggaca attcacctct tcacctgtgc acatgtctag
7081 cccaaatgct ccacaatcaa aacctgcaaa gcctaggtct tcagctcctt cctcttcttc
7141 tagcagtgtt tatagtatgt atactcaatc tactcattta acatctggct cttctagtaa
7201 tgcttcttct gcttccacaa agttgacaaa tttaagctct ggctcctctc aaaacagaac
7261 agcagagtgg gtaaatcaac agaggagtct tagccctttc atgagtggcg cacttaacat
7321 ctcacatgtc acgccaccct caagtagggc ttccagttct gggacggtct cgaccgtgcc
7381 caaggaagtt ttggactcct ggacgtctgc gtttaacaca cacagacagc cgctcttcgc
7441 acacctcaga gtgagggggg agtcacgtgt ttagtgaaaa gaaataattg gctataatgc
7501 gatttctttc taaatttg
//