Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| LC939682 | GII.17 | |
|
|---|---|---|---|
| GII.P17 |
ORF1: 1..5092
ORF2: 5073..6695
ORF3: 6695..7474
LOCUS LC939682 7484 bp RNA linear VRL 24-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY715/2019/JP RNA, nearly complete
genome.
ACCESSION LC939682
VERSION LC939682.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7484)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 28.33x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7484
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY715/2019/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan: Tokyo"
/collection_date="2019-07"
CDS <1..5092
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BIB40789.1"
/translation="DASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPP
GETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQN
TAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAK
IEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSA
SPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKK
VASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKR
DFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGL
LHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDEL
KQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSAR
IRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKP
RDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLF
ITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVV
SILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGN
APKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGE
SFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTM
IRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYG
LKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHE
DPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5073..6695
/codon_start=1
/product="capsid protein VP1"
/protein_id="BIB40790.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6695..7474
/codon_start=1
/product="capsid protein VP2"
/protein_id="BIB40791.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQLKPAKPRSLAPSSSSSSVYSMYTQST
HLTPGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cgacgcttcc gctgccgttg ctggcaaaaa caacaacaac gacaaggaaa aatcttcaag
61 tgacagcttg tttgctaaca tgtctgtcac ttttaagaaa gccctcgggg cgcggtctaa
121 acaaccgccc ccgggagaaa caaaacaaat acaaaaacca ccaaggccac cgacaccgga
181 attggtgaag agaatacctc cacccccacc caatggcgag gatgaaccag ggatagtgta
241 caaagtggga gagggtgtgt ctgggctgcc cgacctaaca actgtggtac aacctgacgc
301 acaaaacaca gcttatagtg ttcccccact tagccagaga gaagtcggtg aagctaaaga
361 accgctgcct ggctccattc tggaaatgtg ggatggtgag atctaccact atgggctgta
421 tgttgagcgg gggcatgtgc tcggagtaca caaaccacct gctgcaataa gccttgccaa
481 aattgaaata acaccgctgt ctctctactg gagagtggtc tacactcccc agtatttgat
541 agatccagga actcttaaga acttgagtgg agagactttc ccatacacgg cctttgacaa
601 caactgttat gccttctgtt gttgggtctt agacctcaac gattcctggc ttagcaggag
661 aatgatccaa agaacgactg gattcttcaa accttatcag gattggaaca gaaaaccctt
721 accaaccatg gatgaaccga aaatcaagaa ggccgcgaat gctgtcctat gcgctctctc
781 ctcactcttc actagaccca ttaaggacat cattggaaag ctcagaccac tgaacattct
841 taatatactg gcaacctgcg attggacttt tgcaggtata gtggaatcct tgatccttct
901 tgctgaactc tttggggtgt tctggacacc cccagatgtg tctgcgatga ttgctccctt
961 actcggtgac tacgagatgc aaggccccga agacctggcc gtggaacttg tgcccgtggt
1021 gatgggagga ataggtttgg tgttaggatt caccaaagaa aagatcggca agatgctttc
1081 atcagctgcg accacactca gggcctgcaa ggatctagga tcttatggat tggagattct
1141 caaattggtc atgaagtggt tcttccccaa gaaggaggag gctaacgaac tagccatggt
1201 gagggccatt gaggatgcag tcctggattt ggaggcaata gaaaacaatc acatgaccac
1261 ccttctcaag gataaagata gcctggccac atacatgagg actcttgact tggaagaaga
1321 gaaagcaagg aaactgtcaa ccaaatcggc gtcacctgac atcgtgggta caataaacgc
1381 attgttggct aggatagcag ccgccaggtc actggtccac aaggctaagg aggagctctc
1441 gagcagacag agacctgttg ttgtaatgat atcaggtaga ccaggtatag gaaagaccca
1501 tctggccaga gagctagcca agaaagttgc gtcaacactg tcaggcgacc aaaggattgg
1561 actggtacct aggaatggcg tcgaccattg ggacgcctac aagggagaaa gggtggtcct
1621 gtgggatgat tatggtatga gcaaccctat acaggacgca ctgaggctcc aagaattggc
1681 tgacacctgt cctctgaccc taaattgtga taggattgaa aacaaaggaa aagtgttcga
1741 cagtgatgcc ataattataa caaccaacct tgcaaaccca gcaccactag actatgtcaa
1801 ctttgaggcc tgctctagac gcatagactt cttggtgtat gcagacgcac ctgacattga
1861 gaaggctaag cgtgacttcc ctggccaacc agatatgtgg aaagaccatt tcagaccaga
1921 cttctcacac attaaacttc agctggcacc acagggaggt tttgacaaaa atggcaacac
1981 cccacatggc aaaggtgtgg taaagtccct gacgattggt tctctgatcg ccagggcctc
2041 cggcttgctc cacgagagaa tggatgaatt cgagctccaa ggctctgacc tgccaacctt
2101 caattttgac cgcaacaaag tcgctgcctt cagacaacta gcagctgaaa acaaatatgg
2161 tcttatggac acattgaggg tcggcaacca actgaaaagt gttaagaccc tggatgagct
2221 gaagcaggcc ataaagaaca tcagtatcaa gaagtgtcag atagtgtata atggatgcac
2281 ctataccatg gaatctgatg ggaggggcaa ggttgtggtt gaaaaggtac aaaacgcaac
2341 agttcaaacc aacaatgaac ttgtaggggc gctccaccac ctgagatctg caaggataag
2401 atactatgtt aaatgtttcc aagaagccat ttactctcta ctccaaattg ctggtgcagc
2461 ctttgtcacc tcacgcatcg tgaggcgcat gaacatatca aacctctggt cgaagccacc
2521 catcgaggag ggtgatgagc ctgaagacag aggaggatgc cccaagccca gggatgaaga
2581 tgacctcact attgactcta gagacattaa agtggaaggg aagaagggca agaacaagtc
2641 tggccggggc aagaaacaca cagccttctc ttccaagggc ctcagtgatg aagagtacga
2701 tgagtacaag agaatcagag aggagaggaa tggcaaatac tcaatagagg aatacctcca
2761 agatagggac agatactatg aagagcttgc cattgctaag gccactgaag aggacttctg
2821 tgaggaggag gagatcaaaa tccgccagag aatcttccga cccaccagga agcagcggaa
2881 agaggaaagg gccacgcttg ggctcgtcac aggatcggaa atcagaaaga ggaatccaga
2941 tgactttaaa ccaaaaggaa aattgtgggc tgatgacaac aggagcgtgg attacaatga
3001 gaggatagat tttgaggctc ccccgagtgt ttggtctagg atagtcaact ttggcacagg
3061 ctggggattc tgggtttctc caagtctctt tataacttca acacacgtca taccaaaagg
3121 aatcactgag gcctttggag tgcccataaa ccaaatccaa attcacaaat ctggagaatt
3181 ttgccgcttg cggtttccaa agccaattag accagacgtg agtgggatga tcttggaaga
3241 gggcgcccct gaaggtactg ttgtgtctat tctcatcaaa aggacaacag gggagctgat
3301 gcctcttgca gtcagaatgg ggactcatgc cacaatgaaa atccaaggta gaacggtggg
3361 tggtcagatg ggtatgcttc tcactggctc aaatgctaaa ggcatggatc taggcacaac
3421 gccaggtgac tgcggatgtc catacatata caaaaggggc aatgaccttg tggtcattgg
3481 ggtgcacact gcagcagctc gtggaggcaa cacggtcata tgtgccacac agggaagtga
3541 aggtgaagcc actcttgaag ggggtgacaa caagggtacc tattgtggag cccccatttt
3601 gggacctggc aatgcaccaa aattgagcac aaagacaaaa ttctggagat cctctaacgc
3661 accgcttccc ccaggtactt atgaaccagc ataccttggt gggagagacc cgcgcgtgaa
3721 gggaggccca tctctgcaac aagttatgag agaccaactt aaacctttta cagagcccag
3781 agggaagcca ccaaacccaa atgtcttaga gtcagcaaag aagactatca tcaatgttct
3841 ggaacaaacc attgaccccc ctcaaaagtg gtcatatgcc caagcttgtg catccctcga
3901 caagacaacc tccagtggat acccgcacca cgtccggaag aatgactatt ggagtggtga
3961 atccttcaca ggaaaacttg cagatcaggc ttcaaaagca aatctcatgt atgaggaagg
4021 caagcacatg caaccagttt acaccgcagc actcaaagac gagctcgtga agactgacaa
4081 aatttatggc aaaatcaaga aaagactcct gtggggttct gacctctcca caatgattcg
4141 atgcgccaga gcatttggtg gtctcatgga tgaattcaaa gcaaattgta ttacactccc
4201 tatcagagtt ggtatgaata tgaatgaaga tggtcccata atatttgaga aacactccag
4261 gtacaggtac cactatgatg ctgattactc ccgctgggac tccacacaac agcgggcagt
4321 gctggaagcg gcacttgaaa tcatggtgag attttctgct gagccacagc tggcacaaat
4381 agtggcagag gacctgctgt caccaagtgt ggttgatgtg ggcgatttca aaatcgctat
4441 caatgaaggc ctaccatctg gcgtgccttg cacctcacaa tggaattcta ttgcccactg
4501 gttactcacc ttgtgtgccc tttctgaagt gacaggatta ggtcctgaca tcatacaagc
4561 taactccatg tactctttct atggtgatga tgagattgtg agcacagaca taaaattgga
4621 cccagagaaa ttgaccgcaa agctcaaaga atatggcctt aaacccactc ggcctgacaa
4681 aactgagggg ccgttggtga ttagtgagga cctgaatggg ttgactttcc tccgccgaac
4741 agtcacccgt gatccagcag gttggtttgg aaagttggac caaaactcca tcctcaggca
4801 gttgtactgg acaagaggac ccaaccatga agaccccagt gagaccatga taccacacgc
4861 acaaagacct gtgcagctca tggcactact aggagaatcc tccctacatg gaccctcatt
4921 ttacagcaag gttagcaaat tagtcatatc tgaacttaaa gagggaggaa tggattttta
4981 tgtgcccaga caagagtcaa tgttcagatg gatgaggttc tcagatctaa gcacatggga
5041 gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat gacgccgctc
5101 catctaatga tggtgctgct ggtctcgtac cagagggcaa caacgagacc cttcccctag
5161 aaccagttgc gggcgcagct atagccgcac ccgtcactgg ccaaaataat ataattgacc
5221 cctggattag aacaaatttt gtgcaagcac caaatggaga gttcacagtg tcacccagaa
5281 actctcctgg agaaatttta ttaaatttag agttgggccc tgatttgaac ccttatttgg
5341 ctcatttgtc aaggatgtac aatgggtatg ctggtggagt ggaagttcag gttctcctgg
5401 cagggaacgc gttcactgcc gggaagatcc tcttcgctgc cgtcccgcca aatttcccag
5461 tggaattctt aagcccagcc cagatcacaa tgctcccaca tttaatagta gatgttagga
5521 ctcttgaacc aattatgatc ccactccctg atgttaggaa tacattcttc cattatagca
5581 accagcctaa cagccgcatg agattagtgg ctatgctcta taccccactc agatctaatg
5641 gctcaggtga tgatgtcttt actgtctctt gcagggtttt gactaggcct actcctgatt
5701 ttgagttcac ttatttagtg ccaccttctg ttgaatctaa aactaagcct ttttccttac
5761 ctattttaac cctttctgag ctcacaaatt cgaggtttcc agtccccatc gattcgcttt
5821 tcaccgccca gaataatgtg ttgcaggtgc agtgtcaaaa tggcaggtgt acacttgatg
5881 gtgagttaca aggcacaacc cagttgcttc caaccggcat ctgtgcattc agaggacggg
5941 tgacagcaca aattaaccaa cgtgacaggt ggcacatgca actgcaaaac ctcaatggta
6001 caacatacga cccaactgat gatgtgccag ccccgctggg tacacctgac ttcaagggcg
6061 tcgtgtttgg gatggtaagc caaagaaatg tgggtaatga tgcgcctggc tcaaccagag
6121 cccaacaggc gtgggtttca acctatagcc cccaatttgt ccccaaatta ggttctgtca
6181 atcttagaat tagtaataat gatgatttcc aattccagcc gacaaaattc acaccagtgg
6241 gcgtcaatga tgacgatgat gaccacccgt tcagacagtg ggaactacca aactattcag
6301 gggagcttac cttgaatatg aatcttgccc ccccagttgc tccaaatttt cctggtgaac
6361 aattgttatt cttcagatct ttcgtgccat gctcaggagg ttacaaccaa ggtattatag
6421 attgtcttat tccccaagaa tggatccaac atttctatca ggaatcagca ccctcccagt
6481 cagacgtggc cctaatcagg tatgtcaacc ccgatacggg acgcacactg tttgaagcaa
6541 aattgcacag atctggttac attactgtgg ctcactctgg agactatcct cttgttgttc
6601 cggctaatgg acactttaga tttgattctt gggtaaatca gttttactca ctcgccccaa
6661 tgggaactgg gaatgggcga aggagggctc agtaatggct ggggctttca ttgcaggatt
6721 ggcaggcgac atgctcacgt catctgtggg ctcccttgtg aacgcaggag caaacgccat
6781 caaccaaaag atagactttg aaaacaacaa acaactccag tctgcttcct ttcagcatga
6841 taaagagatg ctccaagcgc aggtgagggc aaccaagcag ctgcaatctg aaatgatagc
6901 cctaaaacaa ggggttttgg ccgcaggcgg cttttccccc actgatgcag caaggggatc
6961 cattggtgca cccatgacaa aggtgcttga ctggtctggc actcgatact gggcgcccaa
7021 ttccacaaag acaactggct attcgggaca atttacttct tcacctgtgc atatgtctag
7081 cccaaatgct ccacaattaa aacctgcaaa gcctaggtct ctagctcctt cctcttcttc
7141 tagcagtgtc tatagtatgt atactcaatc tactcatttg acacctggct cttctagtaa
7201 tgcttcttct gcctccacaa aattgacaaa tttaagttct ggctcctctc aaaacagaac
7261 agcagagtgg gtaaatcaac agagaagtct tagccctttc atgagtggcg cacttaatat
7321 ctcacatgtc acgccaccct caagtagggc ttccagttcc gggacggtct cgaccgtgcc
7381 caaggaagtt ttggactcct ggacgtctgc gtttaacaca cacagacagc cgctcttcgc
7441 acacctcaga gtgagggggg agtcacgtgt ttagtgaaaa gaaa
//