Typing tool
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Typing tool
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Complete norovirus genomes
| LC936419 | GII.17 | |
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| GII.P17 |
ORF1: 1..5053
ORF2: 5034..6650
ORF3: 6650..7429
LOCUS LC936419 7436 bp RNA linear VRL 05-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY252165/2026/JP RNA, nearly complete
genome.
ACCESSION LC936419
VERSION LC936419.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7436)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 37.29x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7436
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY252165/2026/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2026-01"
CDS <1..5053
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BHY91785.1"
/translation="DNVKSSSDSLFSNMTVTFKKALGARSKQPPPGETKQTLRPPRPP
TPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTAYSVPPLSQREV
GEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIELTPLSLYWRVV
YTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFRP
YQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPLNIMNILATCDWT
FAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVELVPVVMGGIGLV
LGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIED
AVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSASPDIVGTVNALLA
RIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGL
IPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVF
DSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHY
RPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQGP
NLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNITIKKCQ
IVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARIRYYVKCFQEAIY
SILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKPRDEDDLTIDSKDI
KAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYE
ELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPK
GKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGITE
AFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELMP
LAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYLYKRGNDFVVI
GVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRS
SNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLESAKKT
IINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKA
NLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDE
LKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMV
RFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCAL
SEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPL
VISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRP
VQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEG
DRNLAPSFVNEDGVE"
CDS 5034..6650
/codon_start=1
/product="capsid protein VP1"
/protein_id="BHY91786.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6650..7429
/codon_start=1
/product="capsid protein VP2"
/protein_id="BHY91787.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cgacaatgta aaatcttcaa gtgacagctt gttttctaac atgactgtta cttttaagaa
61 agccctcggg gcgcggtcta agcagccgcc cccgggagaa acaaaacaaa cactaagacc
121 accaaggccg ccgacaccgg aattggtgaa gaagataccc ccaccccccc ccaatggcga
181 ggatgaacca aaggtaacgt ataaggtggg agaaggtgtg tctgggctgc ccgacttaac
241 aaccgtggca caacctgacg cacagaacac agcctatagt gtccccccac ttagccagag
301 agaggtcggc gaagctagag aaccgttgcc tggctccatt ctggaaatgt gggatggtga
361 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctgggagtgc acaaaccacc
421 tgctgcaata agccttgcca aaattgagtt aacaccgctg tctctctact ggagagtggt
481 ctacactccc cagtacttga tagctccaga gaccctcaag aatttaaatg gagagacttt
541 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggttc tagacctcaa
601 cgactcctgg cttagcagaa gaatggtcca aagaacaacc ggattcttca gaccgtatca
661 ggactggaac agaaaaccct taccaaccat ggatgaacca aaaatcaaga aggccgcgaa
721 tgctgttctg tgtgctctct cctcactctt cactaggccc atcaaagatg tcattggaaa
781 gcttaaacca ctaaacatta tgaacatact ggcaacttgt gattggactt ttgcgggcat
841 agtggaatcc atgatccttc ttgctgaact ctttggggtg ttctggacgc ccccagatgt
901 gtctgcaata attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc
961 cgtggaactt gtgcccgtgg taatgggagg aataggtttg gtgttaggat tcaccaagga
1021 aaagatcggc aagatgcttt catcagctgc aaccacactc agggcctgta aggatctagg
1081 atcttatggg ttggagatac tcaaactggt catgaagtgg ttcttcccca agaaggagga
1141 ggccaacgag ttagccatgg tgagggccat tgaggatgca gttctggatt tggaggcaat
1201 agaaaacaac cacatgacca ctctccttaa ggacaaagac gccctggcca catacatgag
1261 gactcttgac ttggaagaag aaaaagcaag gaaactatct tccaaatcgg cgtcacctga
1321 catcgtgggc acagtaaacg cattattggc aagaatagca gccgccaggt cactggtcca
1381 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgttatga tatcaggtag
1441 gccaggtata ggaaagaccc atctggccag agagctagcc aagaaggttg cgtcaacact
1501 gtcaggcgac caaaggattg gactgatacc cagaaatggc gtcgaccatt gggacgccta
1561 caaaggagag cgggtggttc tgtgggatga ctatggcatg agcaacccta tacaggacgc
1621 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg acagaattga
1681 aaacaaagga aaagtgttcg acagtgacgc cataatcata acgaccaacc ttgcaaaccc
1741 agcaccattg gattatgtca actttgaggc ttgttccaga cgcatagact tcttggtgta
1801 tgcagacgca cctgacatcg agaaggctaa gcgtgacttt cctggccaac cagatatgtg
1861 gaaagaccat tacagaccag acttctcaca cattaaactt cagctcgcac cacagggagg
1921 ctttgataag agtggcaaca ccccacatgg caaaggcgtg gttaagtctc tgacgattgg
1981 ctctctgatc gccagggctt ctggcttgct ccatgagaga atggatgaat tcgagctcca
2041 aggccccaac ttaccaacct tcaatttcga ccgtaacaaa gtcgccgcct tcagacaatt
2101 ggcagctgaa aacaaatacg gtcttatgga cacactgaga gtcggcaacc aactgaaaag
2161 tgtcaaaacc ctggatgagc tgaagcaggc cataaagaac atcaccatca agaagtgcca
2221 gatagtgtac aatggatgca cctacaccat ggaatctgat gggaggaaca aggttgtggt
2281 tgaaaaggtt caaaatgcaa cagtccaaac caacaatgaa cttgcaggag cactccacca
2341 cctgagatct gcaagaataa ggtattatgt caaatgtttc caagaagcta tttactctat
2401 actccaaatt gctggtgcag ccttcgtcac cacacgcatc gtgaggcgca tgaacatctc
2461 aaacctctgg tcgaagccac ccgtcgaaga gggtgatgag cctgaagaca aaggggggtg
2521 ccccaagccc agggatgaag atgacctcac tattgactcc aaagacatta aagcagaagg
2581 taagaagggc aagaacaaat ctggccgggg caagaaacac acagctttct catccaaggg
2641 cctcagtgat gaagagtacg atgagtacaa gagaatcagg gaggagagaa atggcaagta
2701 ctcaatagaa gaatacctcc aggataggga tagatactat gaagagcttg ccattgctaa
2761 ggccactgag gaagacttct gtgaagagga ggaaatcaaa attcgccaga gaatcttccg
2821 gcccactagg aagcagcgga aagaggaaag agccacgctt gggctcgtca caggatcgga
2881 aatcagaaag aggaacccag atgattttaa gccaaaagga aaattgtggg ctgatgacaa
2941 caggagtgtg gactacaatg agaggataga ttttgaggct cctccaagtg tttggtctag
3001 gatagtcaac tttggtacag gatggggatt ctgggtctcc ccaagtctct ttataacttc
3061 aacacatgtc ataccaaaag gaattactga ggcctttgga gttcccatta accaaattca
3121 aattcacaaa tctggagagt tttgccgctt gcggtttcca aaaccaatca ggccagacgt
3181 gagtggaatg atcttggaag agggtgcccc tgaaggcact gttgtttcca ttctcatcaa
3241 gaggacgaca ggggaactga tgcctctcgc agtcagaatg ggaactcatg ccacaatgaa
3301 aatccaaggc agaacggtgg gcggtcaaat gggcatgctt ctcactggct caaacgccaa
3361 aagcatggac ctaggcacaa caccaggtga ctgtgggtgc ccatacctat acaaaagggg
3421 caatgacttc gtggtcattg gggtgcacac tgcagcagcc cgtggaggta acacggtcat
3481 atgtgccaca caggggagtg aaggcgaagc caccctcgaa ggaggtgaca acaagggcac
3541 ctattgtgga gcccccatct tgggtcctgg caacgcacca aaattgagca caaaaacaaa
3601 attctggaga tcttctaacg cgccgctccc gccaggcacc tacgaaccag cataccttgg
3661 tggaaaagac ccgcgtgtga agggaggccc atctctacaa caggttatga gagaccaact
3721 caaacctttt acagagccca gagggaagcc accaaaacca agtgtcctag aatcagcaaa
3781 gaagaccatc attaatgttc tggaacaaac tattgacccc cctgaaaagt ggtcatatgc
3841 ccaagcttgt gcatccctcg acaagacaac ctccagcgga tacccgcatc acgtccggaa
3901 gaatgactac tggagtggtg aatccttcac ggggaaactt gcagaccagg cctcaaaagc
3961 aaatctcatg tatgaggaag gtaagcacat gcaaccagtt tacaccgcag cactcaaaga
4021 cgagctcgtg aaaactgaca aaatttatgg caagatcaag aaaagactcc tgtggggctc
4081 tgacctatcc accatgattc gatgcgccag ggcatttggt ggcctcatgg acgagctcaa
4141 agcaaattgt atcacactcc ctatcagagt tggtatgaac atgaatgaag atggtcccat
4201 aatatttgaa aagcactcca ggtacaggta ccactatgat gctgattatt cccgctggga
4261 ttccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc
4321 tgagccacag ttggcacaaa tagtggcaga ggacctgcta tcaccaagtg tggttgatgt
4381 gggcgatttc aaaattacta ttaatgaagg cctaccatct ggcgtgcctt gcacttcaca
4441 atggaattct attgcccact ggttactcac cctatgtgcc ctgtctgaag tgacaggact
4501 aggccctgac atcatacaag ccaactccat gtactctttc tatggtgatg atgagattgt
4561 gagcacagac ataaaattag acccagagaa attgactgca aaactcaaag aatatggtct
4621 taaacccacc cggcctgaca agactgaggg gccactggta attagtgagg acctgaatgg
4681 gttgactttc ctccgccgaa cagtcacccg cgatccagcg ggttggtttg gaaagttgga
4741 ccaaaactcc atcctcagac agctgtactg gacaagggga cccaaccatg aagaccccag
4801 tgagactatg ataccacacg cacagagacc tgtgcagctc atggcattgc taggagaatc
4861 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ctggttatat ctgaacttaa
4921 agagggagga atggattttt atgtgcccag acaagagtca atgttcaggt ggatgaggtt
4981 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga
5041 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca
5101 ataacgagac ccttccccta gaaccagttg cgggcgcagc catagccgca cccgtcactg
5161 gccaaaataa tataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag
5221 agttcacagt gtcacccaga aactctcctg gagaaatttt actaaaccta gagttgggcc
5281 ctgatctgaa cccttattta gctcatttgt caaggatgta taatggatat gctggtggag
5341 ttgaagtcca ggttctcctg gcagggaacg cgttcactgc cgggaagatc ctcttcgccg
5401 ctgtcccgcc aaattttccg gtggaattct tgagcccagc ccagattaca atgctcccac
5461 atataatagt agatgttagg actcttgaac caattatgat cccattacct gatgttagga
5521 atacattctt tcactataat aatcagccca acagccgcat gagattagtg gctatgctct
5581 acacccccct tagatctaat ggctcaggtg atgatgtttt cactgtttct tgcagggttt
5641 tgactaggcc tacccctgat tttgagttca cttatctagt gccaccctct gttgaatcta
5701 agactaaacc cttttcttta cccattctaa ccctttctga gctcacaaat tcgaggttcc
5761 cggtccccat cgattcgctt ttcaccgccc aaaataatgt tttgcaggtg cagtgtcaaa
5821 atggcaggtg cacacttgac ggtgagctac aaggcacaac ccagttgctc ccatctggca
5881 tctgtgcgtt cagggggcgg gtgacagcag aaactgacaa tcctgacaag tggcacatgc
5941 aactgcaaaa ccttaatggc acaacatatg acccaactga tgatgtgcca gccccactgg
6001 gtacacctga cttcaagggc gtcgtgtttg ggatggcaag ccaaagaaat gtgggtaacg
6061 acgcgcccgg ctcaaccagg tcccatgagg cggtgatttc aacctacagc cccagatttg
6121 ttcctaaatt aggctctgtc aatttcaaaa gcaatgatga tgatttccaa ttgcagccaa
6181 caagattcac accagtgggc attaatgatg atggcaacca accattcaga caatgggaat
6241 taccagatta ttcaggagtg cttaccttga atatgaacct tgccccccct gttgctccaa
6301 atttccctgg cgaacaatta ctattcttca gatcttctgt gccatgttca ggaggttaca
6361 accaaggtat tatagattgc cttatccccc aagaatggat ccaacacttc taccaggaat
6421 cagcaccttc tcagtcagaa gtggccctaa tcaggtacgt caaccccgac acgggtcgta
6481 cactgtttga ggcaaaattg cataggtcag gctatatcac tgtggctcat tctggagact
6541 atcctcttgt tgttccggct aatggatact ttagatttga ctcttgggta aatcagtttt
6601 actcactcgc cccaatggga actgggaatg ggcgaaggag ggctcagtaa tggctggagc
6661 tttcattgca ggattggcgg gtgacatgct cacgtcatcc gtgggctccc tggtgaacgc
6721 aggggcaaac gccatcaacc aaaagataga ctttgaaaac aacaaacaac tccagtctgc
6781 ttcctttcaa catgataaag agatgctcca agcgcaggtg aacgcaacca agcagctgca
6841 gtctgagatg atagccctaa aacagggggt tttggccgca ggcggctttt cccctactga
6901 tgcagcgagg ggggccatcg gtgcacccat gacaaaggtg cttgactggt ctggcactcg
6961 atactgggct cccaattcca caaagacaac tggttattcg gggcaattca cctcttcacc
7021 tgtgcacatg cccagcccga gtgtcccaca atcaaaaccc gcaaagccca agtctctagg
7081 ttcttcttct tcttctagta gtgtttacag tatgtctacc caattaactt ctctaacatc
7141 tggctcttct agtaatgctt cttctgcttc tacaaaattg acaaatttga gctccggctc
7201 ttctcaaaac agaacagcag agtgggtgaa ccaacagaga agtctcagcc ctttcatgag
7261 tggcgcactc aatatctcgc atgtcacgcc accttcaagt agggcctcca gttctgggac
7321 ggtctcaacc gtgcccaagg aagttttgga ctcctggaca tctgcattca acacacacag
7381 acagccgctc ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaag
//