Typing tool
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Typing tool
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Complete norovirus genomes
| LC936416 | GII.17 | |
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| GII.P17 |
ORF1: 1..5059
ORF2: 5040..6656
ORF3: 6656..7435
LOCUS LC936416 7485 bp RNA linear VRL 05-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY251500/2025/JP RNA, nearly complete
genome.
ACCESSION LC936416
VERSION LC936416.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7485)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 37.77x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7485
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY251500/2025/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2025-11"
CDS <1..5059
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BHY91776.1"
/translation="NNDNVKSSSDSLFSNMTVTFKKALGARSKQPPPGETKQTLRPPR
PPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTAYSVPPLSQR
EVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIELTPLSLYWR
VVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFF
RPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPLNIMNILATCD
WTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVELVPVVMGGIG
LVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAI
EDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSASPDIVGTVNAL
LARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRI
GLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGK
VFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKD
HYRSDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQ
GPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNITIKK
CQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARIRYYVKCFQEA
IYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKPRDEDDLTIDSK
DIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRY
YEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFK
PKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGI
TEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGEL
MPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDFV
VIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFW
RSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLESAK
KTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQAS
KANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLM
DELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEI
MVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLC
ALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEG
PLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQ
RPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTW
EGDRNLAPSFVNEDGVE"
CDS 5040..6656
/codon_start=1
/product="capsid protein VP1"
/protein_id="BHY91777.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSYDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6656..7435
/codon_start=1
/product="capsid protein VP2"
/protein_id="BHY91778.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSPSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 caacaacgac aatgtaaaat cttcaagtga cagcttgttt tctaacatga ctgttacttt
61 taagaaagcc ctcggggcgc ggtctaagca gccgcccccg ggagaaacaa aacaaacact
121 aagaccacca aggccgccga caccggaatt ggtgaagaag atacccccac ccccccccaa
181 tggcgaggat gaaccaaagg taacgtataa ggtgggagaa ggtgtgtctg ggctgcccga
241 cttaacaacc gtggcacaac ctgacgcaca gaacacagcc tatagtgtcc ccccacttag
301 ccagagagag gtcggcgaag ctagagaacc gttgcctggc tccattttgg aaatgtggga
361 tggtgagatc taccactatg ggctgtatgt tgagcggggg catgtgctgg gagtgcacaa
421 accacctgct gcaataagcc ttgccaaaat tgagttaaca ccgctgtctc tctactggag
481 agtggtctac actccccagt acttgatagc tccagagacc ctcaagaatt taaatggaga
541 gactttccca tacacggcct ttgacaacaa ctgttatgcc ttctgttgtt gggttctgga
601 cctcaacgac tcctggctta gcagaagaat ggtccaaaga acaaccggat tcttcagacc
661 gtatcaggac tggaacagaa aacccttacc aaccatggat gaaccaaaaa tcaagaaggc
721 cgcgaatgct gttctgtgtg ctctctcctc actcttcact aggcccatca aagatgtcat
781 tggaaagctt aaaccactaa acattatgaa catactggca acttgtgatt ggacttttgc
841 gggcatagtg gaatccatga tccttcttgc tgaactcttt ggggtgttct ggacgccccc
901 agatgtgtct gcaataattg ctcccttact cggtgactac gagatgcaag gccccgaaga
961 cctggccgtg gaacttgtgc ccgtagtaat gggaggaata ggtttggtgt taggattcac
1021 caaggaaaag atcggcaaga tgctttcatc agctgcaacc acactcaggg cctgtaagga
1081 tctaggatct tatgggttgg agatactcaa actggtcatg aagtggttct tccccaagaa
1141 ggaggaggcc aacgagttag ccatggtgag ggccattgag gatgcagttc tggatttgga
1201 ggcaatagaa aacaaccaca tgaccactct ccttaaggac aaagacgccc tggccacata
1261 catgaggact cttgacttgg aagaagaaaa agcaaggaaa ctatcttcca aatcggcgtc
1321 acctgacatc gtgggcacag taaacgcatt attggcaaga atagcagccg ccaggtcact
1381 ggtccacaag gctaaggagg agctctcgag cagacagaga cctgttgttg taatgatatc
1441 aggtaggcca ggtataggaa agacccatct ggccagagag ctagccaaga aggttgcgtc
1501 aacactgtca ggcgaccaaa ggattggact gatacccaga aatggcgtcg accattggga
1561 cgcctacaaa ggagagcggg tggttctgtg ggatgactat ggcatgagca accctataca
1621 ggacgcactg aggctccaag aattggctga cacctgtcct ctgaccctaa attgtgacag
1681 aattgaaaac aaaggaaaag tgttcgacag tgacgccata atcataacga ccaaccttgc
1741 aaacccagca ccactggatt atgtcaactt tgaggcttgt tccagacgca tagacttctt
1801 ggtgtatgca gacgcacctg acatcgagaa ggctaagcgt gacttccctg gccaaccaga
1861 tatgtggaaa gaccattaca gatcagactt ctcacacatt aaacttcagc tcgcaccaca
1921 gggaggcttt gataagagtg gcaacacccc acatggcaaa ggtgtggtta agtctctgac
1981 gattggttct ctgatcgcca gggcttctgg cttgctccat gagagaatgg atgaattcga
2041 gctccaaggc cccaacttgc caaccttcaa tttcgaccgt aacaaagtcg ccgccttcag
2101 acaattggca gctgaaaaca aatacggtct tatggacaca ctgagggtcg gcaaccaact
2161 gaaaagtgtc aaaaccctgg atgagctgaa gcaggctata aagaacatca ccatcaagaa
2221 gtgccagata gtgtacaatg gatgcaccta caccatggaa tctgatggga ggaacaaggt
2281 tgtggttgaa aaggttcaaa atgcaacagt ccaaaccaac aatgaacttg caggagcact
2341 ccaccacctg agatctgcaa gaataaggta ttatgtcaaa tgtttccaag aagctattta
2401 ctctatactc caaattgctg gtgcagcctt cgtcaccaca cgcatcgtga ggcgcatgaa
2461 catctcaaac ctctggtcga agccacccgt cgaagagggt gatgaacctg aagacaaagg
2521 ggggtgcccc aagcccaggg atgaagatga cctcactatt gactccaaag acattaaagc
2581 agaaggtaag aagggcaaga acaaatctgg ccggggcaag aaacacacag ctttctcatc
2641 caagggcctc agtgatgaag agtacgatga gtacaagaga atcagggagg agagaaatgg
2701 caagtactca atagaagaat acctccagga tagggataga tactatgaag agcttgccat
2761 tgctaaggcc actgaggaag acttctgtga agaggaggaa atcaaaattc gccagagaat
2821 cttccggccc accaggaagc agcggaaaga ggaaagagcc acgcttgggc tcgtcacagg
2881 atcggaaatc agaaagagga acccagatga ttttaagcca aaaggaaaat tgtgggctga
2941 tgacaacagg agtgtggact acaatgagag gatagatttt gaggctcccc caagtgtttg
3001 gtctaggata gtcaactttg gtacagggtg gggattctgg gtctccccaa gtctctttat
3061 aacttcaaca catgtcatac caaaaggaat cactgaggcc tttggagttc ccattaacca
3121 aattcaaatt cacaaatctg gagagttttg ccgcttgcgg tttccaaaac caatcaggcc
3181 agacgtgagt ggaatgatct tggaagaggg tgcccctgaa ggcactgttg tttccattct
3241 catcaagagg acgacagggg aactgatgcc tctcgcagtc agaatgggaa ctcatgccac
3301 aatgaaaatc caaggtagga cggtgggcgg tcaaatgggc atgcttctca ctggctcaaa
3361 cgccaaaagc atggacctag gcacaacacc aggtgactgt gggtgcccat acatatacaa
3421 aaggggcaat gacttcgtgg tcattggggt gcacactgca gcagcccgtg gaggtaacac
3481 ggtcatatgt gccacacagg ggagtgaagg cgaagccacc ctcgaaggag gtgacaacaa
3541 gggcacctat tgtggggccc ccatcttggg tcctggcaac gcaccaaaat tgagcacaaa
3601 aacaaaattc tggagatctt ctaacgcgcc gctcccgcca ggcacctatg aaccagcata
3661 ccttggtgga aaagacccgc gtgtgaaggg aggcccatct ctacaacagg ttatgagaga
3721 ccaactcaaa ccttttacag agcccagagg gaaaccacca aaaccaagtg tcctagaatc
3781 agcaaagaag accatcatta atgttctgga acaaaccatt gacccccctg aaaagtggtc
3841 atatgcccaa gcttgtgcat ccctcgacaa gacaacctcc agtggatacc cgcatcacgt
3901 ccggaagaat gactactgga gtggtgaatc tttcacgggg aaacttgcgg accaggcctc
3961 aaaagcaaat ctcatgtatg aggaaggtaa gcacatgcaa ccagtttaca ccgcagcact
4021 caaagacgag ctcgtgaaaa ctgacaaaat ttatggcaag atcaagaaaa gactcctgtg
4081 gggctctgac ctatccacca tgattcggtg cgccagggca tttggtggcc tcatggacga
4141 gctcaaagca aattgtatca cactccctat cagagttggt atgaacatga atgaagatgg
4201 tcccataata tttgaaaagc actccaggta caggtaccac tatgatgctg attattcccg
4261 ctgggattcc acacaacagc gggcagtgct ggaagcggca cttgaaatca tggtgagatt
4321 ttctgctgag ccacaattgg cacaaatagt ggcagaggac ctgctatcac caagtgtggt
4381 tgatgtgggc gatttcaaaa ttactattaa tgaaggccta ccatctggcg tgccttgcac
4441 ttcacaatgg aattctattg cccactggtt actcacccta tgtgccctgt ctgaagtgac
4501 aggactaggc cctgacatca tacaagccaa ctccatgtac tctttctatg gtgatgatga
4561 gatagtgagc acagacataa aattagaccc agagaaattg actgcaaaac tcaaagaata
4621 tggtcttaaa cccacccggc ctgacaagac tgaggggcca ctggtaatta gtgaggacct
4681 gaatgggttg actttcctcc gccgaacagt cacccgcgat ccagcgggtt ggtttggaaa
4741 gttggaccaa aactccatcc tcagacagct gtactggaca aggggaccca accatgaaga
4801 ccccagtgag actatgatac cacacgcaca gagacctgtg cagctcatgg cattgctcgg
4861 agaatcctcc ctacatggac cctcatttta cagcaaggtt agcaagctgg ttatatctga
4921 acttaaagaa ggaggaatgg atttttatgt gcccagacaa gagtcaatgt tcaggtggat
4981 gaggttctca gatctaagca catgggaggg cgatcgcaat ctggctccca gttttgtgaa
5041 tgaagatggc gtcgaatgac gccgctccat ctaatgatgg tgctgctggt ctcgtaccag
5101 agggcaataa cgagaccctt cccctagaac cagttgcggg cgcagccata gccgcacccg
5161 tcactggcca aaataatata attgacccct ggattagaac aaattttgtg caagcaccaa
5221 atggagagtt cacagtgtca cccagaaact ctcctggaga aattttacta aacctagagt
5281 tgggccctga tctgaaccct tatttggctc atttgtcaag gatgtataat ggatatgctg
5341 gtggggttga agttcaggtt ctcctggcag ggaacgcgtt cactgccggg aagatcctct
5401 tcgccgctgt cccgccaaat tttccggtgg aattcttaag cccagcccag attacaatgc
5461 tcccacatat aatagtagat gttaggactc ttgaaccaat tatgatccca ttacctgatg
5521 ttaggaacac attcttccac tataataatc agcccaacag ccgcatgaga ttagtggcta
5581 tgctctacac cccccttaga tctaatggct caggtgatga tgttttcact gtttcttgca
5641 gggttttgac taggcctact cctgattttg agttcactta tctagtgcca ccctctgttg
5701 aatctaagac taaacccttt tctttaccca ttctaaccct ttctgagctc acaaattcga
5761 ggttcccggt ccccatcgat tcgcttttca ccgcccaaaa taatgtgttg caggtgcagt
5821 gtcaaaatgg caggtgcaca cttgacggtg agctacaagg cacaacccag ttgctcccat
5881 ctggcatctg tgcgttcagg ggacgggtga cagcagaaac tgacaaccct gacaagtggc
5941 acatgcaact gcaaaacctc aatggcacaa catatgaccc aactgatgat gtgccagccc
6001 cactgggtac acctgacttc aagggcgtcg tgtttgggat ggcaagccaa agaaatgtgg
6061 gtaacgacgc gcccggctca accaggtccc atgaggcggt gatttcaacc tacagcccca
6121 gatttgttcc taaattaggc tctgtcaatt tcaaaagcta tgacgatgat ttccaattgc
6181 agccaacaag attcacacca gtgggcatta atgatgatgg caaccaacca ttcagacaat
6241 gggaactacc agattattca ggggtgctta ccttgaatat gaaccttgcc ccccctgttg
6301 ctccaaattt ccccggcgaa caattactat tcttcagatc ttctgtgcca tgttcaggag
6361 gttacaacca aggtattata gattgcctta tcccccaaga atggatccaa catttctacc
6421 aggaatcagc accttctcag tcagaagtgg ccctaatcag gtacgtcaac cccgacacgg
6481 gtcgtacact gtttgaggca aaattgcata ggtcaggcta tatcactgtg gctcattctg
6541 gagactatcc tcttgttgtt ccggctaatg gatactttag atttgactct tgggtaaatc
6601 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc
6661 tggagctttc attgcaggat tggcgggtga catgctcacg tcatccgtgg gctccctggt
6721 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca
6781 gtctgcttcc tttcaacatg ataaagagat gctccaagcg caggtgaacg caaccaagca
6841 gctgcaatct gagatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc
6901 cactgatgca gcgagggggg ccatcggtgc acccatgaca aaggtgcttg actggtctgg
6961 cactcgatac tgggctccca attccacaaa gacaactggt tattcggggc aattcacctc
7021 ttcacctgtg cacatgccca gcccgagtgt cccacaatca aaacccgcaa agcccaagtc
7081 tctaggttct ccttcttctt ctagtagtgt ttacagtatg tctacccaat taacttctct
7141 aacatctggc tcttctagta atgcttcttc tgcttctaca aaattgacaa atttgagctc
7201 cggctcttct caaaacagaa cagcagagtg ggtgaaccaa cagagaagtc tcagcccttt
7261 catgagtggc gcactcaata tctcgcatgt cacgccacct tcaagtaggg cctccagttc
7321 tgggacggtc tcaaccgtgc ccaaggaagt tttggactcc tggacatctg cattcaacac
7381 acgcagacag ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa
7441 agaaataatt ggctataata tgatttcttt aaaattcaaa tctgg
//