Typing tool
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Typing tool
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Complete norovirus genomes
| LC936414 | GII.17 | |
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| GII.P17 |
ORF1: 1..5099
ORF2: 5080..6696
ORF3: 6696..7475
LOCUS LC936414 7540 bp RNA linear VRL 05-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY251132/2025/JP RNA, nearly complete
genome.
ACCESSION LC936414
VERSION LC936414.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7540)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 829.00x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7540
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY251132/2025/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2025-09"
CDS <1..5099
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BHY91770.1"
/translation="SNDASVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQP
PPGETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDA
QNTAYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL
AKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKL
KPLNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSK
SASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA
KKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA
KRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARAS
GLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD
ELKQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRS
ARIRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCP
KPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS
LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT
VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWS
GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN
HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5080..6696
/codon_start=1
/product="capsid protein VP1"
/protein_id="BHY91771.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6696..7475
/codon_start=1
/product="capsid protein VP2"
/protein_id="BHY91772.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cgtctaacga cgcttccgtt gccgttgctg gcaaaaacaa caacaacgac aatgtaaaat
61 cttcaagtga cagcttgttt tctaacatga ctgttacttt taagaaagcc ctcggggcgc
121 ggtctaagca gccgcccccg ggagaaacaa aacaaacact aagaccacca aggccgccga
181 caccggaatt ggtgaagaag atacccccac ccccccccaa tggcgaggat gaaccaaagg
241 taacgtataa ggtgggagaa ggtgtgtctg ggctgcccga cttaacaacc gtggcacaac
301 ctgacgcaca gaacacagcc tatagtgtcc ccccacttag ccagagagag gtcggcgaag
361 ctagagaacc gttgcctggc tccattctgg aaatgtggga tggtgagatc taccactatg
421 ggctgtatgt tgagcggggg catgtgctgg gagtgcacaa accacctgct gcaataagcc
481 ttgccaaaat tgagttaaca ccgctgtctc tctactggag agtggtctac actccccagt
541 acttgatagc tccagagacc ctcaagaatt taaatggaga gactttccca tacacggcct
601 ttgacaacaa ctgttatgcc ttctgttgtt gggttctaga cctcaacgac tcctggctta
661 gcagaagaat ggtccaaaga acaaccggat tcttcagacc gtatcaggac tggaacagaa
721 aacccttacc aaccatggat gaaccaaaaa tcaagaaggc cgcgaatgct gttctgtgtg
781 ctctctcctc actcttcact aggcccatca aagatgtcat tggaaagctt aaaccactaa
841 acattatgaa catactggca acttgtgatt ggacttttgc gggcatagtg gaatccatga
901 tccttcttgc tgaactcttt ggggtgttct ggacgccccc agatgtgtct gcaataattg
961 ctcccttact cggtgactac gagatgcaag gccccgaaga cctggccgtg gaacttgtgc
1021 ccgtggtaat gggaggaata ggtttggtgt taggattcac caaggaaaag atcggcaaga
1081 tgctttcatc agctgcaacc acactcaggg cctgtaagga tctaggatct tatgggttgg
1141 agatactcaa actggtcatg aagtggttct tccccaagaa ggaggaggcc aacgagttag
1201 ccatggtgag ggccattgag gatgcagttc tggatttgga ggcaatagaa aacaaccaca
1261 tgaccactct ccttaaggac aaagacgccc tggccacata catgaggact cttgacttgg
1321 aagaagaaaa agcaaggaaa ctatcttcca aatcggcgtc acctgacatc gtgggcacag
1381 taaacgcatt attggcaaga atagcagccg ccaggtcact ggtccacaag gctaaggagg
1441 agctctcgag cagacagaga cctgttgttg ttatgatatc aggtaggcca ggtataggaa
1501 agacccatct ggccagagag ctagccaaga aggttgcgtc aacactgtca ggcgaccaaa
1561 ggattggact gatacccaga aatggcgtcg accattggga cgcctacaaa ggagagcggg
1621 tggttctgtg ggatgactat ggcatgagca accctataca ggacgcactg aggctccaag
1681 aattggctga cacctgtcct ctgaccctaa attgtgacag aattgaaaac aaaggaaaag
1741 tgttcgacag tgacgccata atcataacga ccaaccttgc aaacccagca ccattggatt
1801 atgtcaactt tgaggcttgt tccagacgca tagacttctt ggtgtatgca gacgcacctg
1861 acatcgagaa ggctaagcgt gactttcctg gccaaccaga tatgtggaaa gaccattaca
1921 gaccagactt ctcacacatt aaacttcagc tcgcaccaca gggaggcttt gataagagtg
1981 gcaacacccc acatggcaaa ggcgtggtta agtctctgac gattggctct ctgatcgcca
2041 gggcttctgg cttgctccat gagagaatgg atgaattcga gctccaaggc cccaacttac
2101 caaccttcaa tttcgaccgt aacaaagtcg ccgccttcag acaattggca gctgaaaaca
2161 aatacggtct tatggacaca ctgagagtcg gcaaccaact gaaaagtgtc aaaaccctgg
2221 atgagctgaa gcaggccata aagaacatca ccatcaagaa gtgccagata gtgtacaatg
2281 gatgcaccta caccatggaa tctgatggga ggaacaaggt tgtggttgaa aaggttcaaa
2341 atgcaacagt ccaaaccaac aatgaacttg caggagcact ccaccacctg agatctgcaa
2401 gaataaggta ttatgtcaaa tgtttccaag aagctattta ctctatactc caaattgctg
2461 gtgcagcctt cgtcaccaca cgcatcgtga ggcgcatgaa catctcaaac ctctggtcga
2521 agccacccgt cgaagagggt gatgagcctg aagacaaagg ggggtgcccc aagcccaggg
2581 atgaagatga cctcactatt gactccaaag acattaaagc agaaggtaag aagggcaaga
2641 acaaatctgg ccggggcaag aaacacacag ctttctcatc caagggcctc agtgatgaag
2701 agtacgatga gtacaagaga atcagggagg agagaaatgg caagtactca atagaagaat
2761 acctccagga tagggataga tactatgaag agcttgccat tgctaaggcc actgaggaag
2821 acttctgtga agaggaggaa atcaaaattc gccagagaat cttccggccc actaggaagc
2881 agcggaaaga ggaaagagcc acgcttgggc tcgtcacagg atcggaaatc agaaagagga
2941 acccagatga ttttaagcca aaaggaaaat tgtgggctga tgacaacagg agtgtggact
3001 acaatgagag gatagatttt gaggctcctc caagtgtttg gtctaggata gtcaactttg
3061 gtacaggatg gggattctgg gtctccccaa gtctctttat aacttcaaca catgtcatac
3121 caaaaggaat tactgaggcc tttggagttc ccattaacca aattcaaatt cacaaatctg
3181 gagagttttg ccgcttgcgg tttccaaaac caatcaggcc agacgtgagt ggaatgatct
3241 tggaagaggg tgcccctgaa ggcactgttg tttccattct catcaagagg acgacagggg
3301 aactgatgcc tctcgcagtc agaatgggaa ctcatgccac aatgaaaatc caaggcagaa
3361 cggtgggcgg tcaaatgggc atgcttctca ctggctcaaa cgccaaaagc atggacctag
3421 gcacaacacc aggtgactgt gggtgcccat acatatacaa aaggggcaat gacttcgtgg
3481 tcattggggt gcacactgca gcagcccgtg gaggtaacac ggtcatatgt gccacacagg
3541 ggagtgaagg cgaagccacc ctcgaaggag gtgacaacaa gggcacctat tgtggagccc
3601 ccatcttggg tcctggcaac gcaccaaaat tgagcacaaa aacaaaattc tggagatctt
3661 ctaacgcgcc gctcccgcca ggcacctacg aaccagcata ccttggtgga aaagacccgc
3721 gtgtgaaggg aggcccatct ctacaacagg ttatgagaga ccaactcaaa ccttttacag
3781 agcccagagg gaagccacca aaaccaagtg tcctagaatc agcaaagaag accatcatta
3841 atgttctgga acaaactatt gacccccctg aaaagtggtc atatgcccaa gcttgtgcat
3901 ccctcgacaa gacaacctcc agtggatacc cgcatcacgt ccggaagaat gactactgga
3961 gtggtgaatc cttcacgggg aaacttgcag accaggcctc aaaagcaaat ctcatgtatg
4021 aggaaggtaa gcacatgcaa ccagtttaca ccgcagcact caaagacgag ctcgtgaaaa
4081 ctgacaaaat ttatggcaag atcaagaaaa gactcctgtg gggctctgac ctatccacca
4141 tgattcgatg cgccagggca tttggtggcc tcatggacga gctcaaagca aattgtatca
4201 cactccctat cagagttggt atgaacatga atgaagatgg tcccataata tttgaaaagc
4261 actccaggta caggtaccac tatgatgctg attattcccg ctgggattcc acacaacagc
4321 gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag ccacagttgg
4381 cacaaatagt ggcagaggac ctgctatcac caagtgtggt tgatgtgggc gatttcaaaa
4441 ttactattaa tgaaggccta ccatctggcg tgccttgcac ttcacaatgg aattctattg
4501 cccactggtt actcacccta tgtgccctgt ctgaagtgac aggactaggc cctgacatca
4561 tacaagccaa ctccatgtac tctttctatg gtgatgatga gattgtgagc acagacataa
4621 aattagaccc agagaaattg actgcaaaac tcaaagaata tggtcttaaa cccacccggc
4681 ctgacaagac tgaggggcca ctggtaatta gtgaggacct gaatgggttg actttcctcc
4741 gccgaacagt cacccgcgat ccagcgggtt ggtttggaaa gttggaccaa aactccatcc
4801 tcagacagct gtactggaca aggggaccca accatgaaga ccccagtgag actatgatac
4861 cacacgcaca gagacctgtg cagctcatgg cattgctagg agaatcctcc ctacatggac
4921 cctcatttta cagcaaggtt agcaaactgg ttatatctga acttaaagag ggaggaatgg
4981 atttttatgt gcccagacaa gagtcaatgt tcaggtggat gaggttctca gatctaagca
5041 catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgaatgac
5101 gccgctccat ctaatgatgg tgctgctggt ctcgtaccag agggcaataa cgagaccctt
5161 cccctagaac cagttgcggg cgcagccata gccgcacccg tcactggcca aaataatata
5221 attgacccct ggattagaac aaattttgtg caagcaccaa atggagagtt cacagtgtca
5281 cccagaaact ctcctggaga aattttacta aacctagagt tgggccctga tctgaaccct
5341 tatttggctc atttgtcaag gatgtataat ggatatgctg gtggagttga agtccaggtt
5401 ctcctggcag ggaacgcgtt cactgccggg aagatcctct tcgccgctgt cccgccaaat
5461 tttccggtgg aattcttgag cccagcccag attacaatgc tcccacatat aatagtagat
5521 gttaggactc ttgaaccaat tatgatccca ttacctgatg ttaggaatac attctttcac
5581 tataataatc agcccaacag ccgcatgaga ttagtggcta tgctctacac cccccttaga
5641 tctaatggct caggtgatga tgttttcact gtttcttgca gggttttgac taggcctacc
5701 cctgattttg agttcactta tctagtgcca ccctctgttg aatctaagac taaacccttt
5761 tctttaccca ttctaaccct ttctgagctc acaaattcga ggttcccggt ccccatcgat
5821 tcgcttttca ccgcccaaaa taatgttttg caggtgcagt gtcaaaatgg caggtgcaca
5881 cttgacggtg agctacaagg cacaacccag ttgctcccat ctggcatctg tgcgttcagg
5941 gggcgggtga cagcagaaac tgacaatcct gacaagtggc acatgcaact gcaaaacctt
6001 aatggcacaa catatgaccc aactgatgat gtgccagccc cactgggtac acctgacttc
6061 aagggcgtcg tgtttgggat ggcaagccaa agaaatgtgg gtaacgacgc gcccggctca
6121 accaggtccc atgaggcggt gatttcaacc tacagcccca gatttgttcc taaattaggc
6181 tctgtcaatt tcaaaagcaa tgatgatgat ttccaattgc agccaacaag attcacacca
6241 gtgggcatta atgatgatgg caaccaacca ttcagacaat gggaattacc agattattca
6301 ggagtgctta ccttgaatat gaaccttgcc ccccctgttg ctccaaattt ccctggcgaa
6361 caattactat tcttcagatc ttctgtgcca tgttcaggag gttacaacca aggtattata
6421 gattgcctta tcccccaaga atggatccaa cacttctacc aggaatcagc accttctcag
6481 tcagaagtgg ccctaatcag gtacgtcaac cccgacacgg gtcgtacact gtttgaggca
6541 aaattgcata ggtcaggcta tatcactgtg gctcattctg gagactatcc tcttgttgtt
6601 ccggctaatg gatactttag atttgactct tgggtaaatc agttttactc actcgcccca
6661 atgggaactg ggaatgggcg aaggagggct cagtaatggc tggagctttc attgcaggat
6721 tggcgggtga catgctcacg tcatccgtgg gctccctggt gaacgcaggg gcaaacgcca
6781 tcaaccaaaa gatagacttt gaaaacaaca aacaactcca gtctgcttcc tttcaacatg
6841 ataaagagat gctccaagcg caggtgaacg caaccaagca gctgcaatct gagatgatag
6901 ccctaaaaca gggggttttg gccgcaggcg gcttttcccc cactgatgca gcgagggggg
6961 ccatcggtgc acccatgaca aaggtgcttg actggtctgg cactcgatac tgggctccca
7021 attccacaaa gacaactggt tattcggggc aattcacctc ttcacctgtg cacatgccca
7081 gcccgagtgt cccacaatca aaacccgcaa agcccaagtc tctaggttct tcttcttctt
7141 ctagtagtgt ttacagtatg tctacccaat taacttctct aacatctggc tcttctagta
7201 atgcttcttc tgcttctaca aaattgacaa atttgagctc cggctcttct caaaacagaa
7261 cagcagagtg ggtgaaccaa cagagaagtc tcagcccttt catgagtggc gcactcaata
7321 tctcgcatgt cacgccacct tcaagtaggg cctccagttc tgggacggtc tcaaccgtgc
7381 ccaaggaagt tttggactcc tggacatctg cattcaacac acacagacag ccgctcttcg
7441 cacacctcag agtgaggggg gagtcacgtg tttagtgaaa agaaataatt ggctataata
7501 tgatttcttc aaaatctaaa tttggctaat ttgtatcttt
//