Typing tool
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Typing tool
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Complete norovirus genomes
| LC936413 | GII.17 | |
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| GII.P17 |
ORF1: 1..5092
ORF2: 5073..6689
ORF3: 6689..7468
LOCUS LC936413 7489 bp RNA linear VRL 05-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY250798/2025/JP RNA, nearly complete
genome.
ACCESSION LC936413
VERSION LC936413.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7489)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 88.56x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7489
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY250798/2025/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2025-07"
CDS <1..5092
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BHY91767.1"
/translation="DASVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPP
GETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQN
TAYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAK
IELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMVQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKP
LNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSA
SPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKK
VASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKR
DFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGL
LHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDEL
KQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSAR
IRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKP
RDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLF
ITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVV
SILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGN
APKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLRPFTEPRGK
PPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGHPHHVRKNDYWSGE
SFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTM
IRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQW
NSITHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYG
LKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHE
DPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5073..6689
/codon_start=1
/product="capsid protein VP1"
/protein_id="BHY91768.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6689..7468
/codon_start=1
/product="capsid protein VP2"
/protein_id="BHY91769.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSPSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRLRGESRV"
ORIGIN
1 cgacgcttcc gttgccgttg ctggcaaaaa caacaacaac gacaatgtaa aatcttcaag
61 tgacagcttg ttttctaaca tgactgttac ttttaagaaa gccctcgggg cgcggtctaa
121 gcagccgccc ccgggagaaa caaaacaaac actaagacca ccaaggccgc cgacaccgga
181 attggtgaag aagatacccc cacccccccc caatggcgag gatgaaccaa aggtaacgta
241 taaggtggga gaaggtgtgt ctgggctgcc cgacttaaca accgtggcac aacctgacgc
301 acagaacaca gcctatagtg tccccccact tagccagaga gaggtcggcg aagctagaga
361 accgttgcct ggctccattc tggaaatgtg ggatggtgag atctaccact atgggctgta
421 tgttgagcgg gggcatgtgc tgggagtgca caaaccacct gctgcaataa gccttgccaa
481 aattgagtta acaccgctgt ctctctactg gagagtggtc tacactcccc agtacttgat
541 agctccagag accctcaaga atttaaatgg agagactttc ccatacacgg cctttgacaa
601 caactgttat gccttctgtt gttgggttct ggacctcaac gactcctggc ttagcagaag
661 aatggtccag agaacaaccg gattcttcaa accgtatcag gactggaaca gaaagccctt
721 accaaccatg gatgaaccaa aaatcaagaa ggccgcgaat gctgttctgt gtgctctctc
781 ctcactcttc actaggccca tcaaagatgt cattggaaag cttaaaccac taaacattat
841 gaacatactg gcaacttgtg attggacttt tgcgggcata gtggaatcca tgattcttct
901 tgctgaactc tttggggtgt tctggacgcc cccagatgtg tctgcaataa ttgctccctt
961 actcggtgac tacgagatgc aaggccccga agacctggcc gtggaacttg tgcccgtggt
1021 aatgggagga ataggtttgg tgttaggatt caccaaggaa aagatcggca agatgctttc
1081 atcagctgca accacactca gggcctgtaa ggatctagga tcttatgggt tggagatact
1141 caaactggtc atgaagtggt tcttccccaa gaaggaggag gccaacgagt tagccatggt
1201 gagggccatt gaggatgcag ttctggattt ggaggcaata gaaaacaacc acatgaccac
1261 tctccttaag gacaaagacg ccctggccac atacatgagg actcttgact tggaagaaga
1321 aaaagcaagg aaactatctt ccaaatcggc gtcacctgac atcgtgggca cagtaaacgc
1381 attactggca agaatagcag ccgccaggtc actggtccac aaggctaagg aggagctctc
1441 gagcagacag agacctgttg ttgtaatgat atcaggtagg ccaggtatag gaaagaccca
1501 tctggccaga gagctagcca agaaggttgc gtcaacactg tcaggcgacc aaaggattgg
1561 actgataccc agaaatggcg tcgaccattg ggacgcctac aaaggagagc gggtggttct
1621 gtgggatgac tatggcatga gcaaccctat acaggacgca ctgaggctcc aagaattggc
1681 tgacacctgt cctctgaccc taaattgtga cagaattgaa aacaaaggaa aagtgttcga
1741 cagtgacgcc ataatcataa cgaccaacct tgcaaaccca gcaccattgg attatgttaa
1801 ctttgaggct tgttccagac gcatagactt cttggtgtat gcagacgcac ctgacatcga
1861 gaaggctaag cgtgacttcc ctggccaacc agatatgtgg aaagaccatt acagaccaga
1921 cttctcacac attaaacttc agctcgcacc acagggaggc tttgataaga gtggcaacac
1981 cccacatggc aaaggtgtgg ttaagtctct gacgattggt tctctgatcg ccagggcttc
2041 tggcttgctc catgagagaa tggatgaatt cgagctccaa ggccccaact tgccaacctt
2101 caatttcgac cgtaacaaag tcgccgcctt cagacaattg gcagctgaaa acaaatacgg
2161 tcttatggac acactgaggg tcggcaacca actgaaaagt gtcaaaaccc tggatgagct
2221 gaagcaggct ataaagaaca tcaccatcaa gaagtgccag atagtgtaca atggatgcac
2281 ctacaccatg gaatctgatg ggaggaacaa ggttgtggtt gaaaaggttc aaaatgcaac
2341 agtccaaacc aacaatgaac ttgcaggagc actccaccac ctgagatctg caagaataag
2401 gtattatgtc aaatgtttcc aagaagctat ttactctata ctccaaattg ctggtgcagc
2461 cttcgtcacc acacgcatcg tgaggcgcat gaacatctca aacctctggt cgaagccacc
2521 cgtcgaagag ggtgatgaac ctgaagacaa aggggggtgc cccaagccca gggatgaaga
2581 tgacctcact attgactcca aagacattaa agcagaaggt aagaagggca agaacaaatc
2641 tggccggggc aagaaacaca cagctttctc atccaagggc ctcagtgatg aagagtacga
2701 tgagtacaag agaatcaggg aggagagaaa tggcaagtac tcaatagaag aatacctcca
2761 ggatagggat agatactatg aagagcttgc cattgctaag gccactgagg aagacttctg
2821 tgaagaggag gaaatcaaaa ttcgccagag aatcttccgg cccacaagga agcagcggaa
2881 agaggaaaga gccacgcttg ggctcgtcac aggatcggaa atcagaaaga ggaacccaga
2941 tgattttaag ccaaaaggaa aattgtgggc tgatgacaac aggagtgtgg actacaatga
3001 gaggatagat tttgaggctc ccccaagtgt ttggtctagg atagtcaact ttggtacagg
3061 gtggggattc tgggtctccc caagtctctt tataacttca acacatgtca taccaaaagg
3121 aatcactgag gcctttggag ttcccattaa ccaaattcaa attcacaaat ctggagagtt
3181 ttgccgcttg cggtttccaa aaccaatcag gccagacgtg agtggaatga tcttggaaga
3241 gggtgcccct gaaggcactg ttgtttccat tctcatcaag aggacgacag gggaactgat
3301 gcctctcgca gtcagaatgg gaactcatgc cacaatgaaa atccaaggta gaacggtggg
3361 cggtcaaatg ggcatgcttc tcactggctc aaacgccaaa agcatggacc taggcacaac
3421 accaggtgac tgtgggtgcc catacatata caaaaggggc aatgacttcg tggtcattgg
3481 ggtgcacact gcagcagccc gtggaggtaa cacggtcata tgtgccacac aggggagtga
3541 aggcgaagcc accctcgaag gaggtgacaa caagggcacc tattgtggag cccccatctt
3601 gggtcctggc aacgcaccaa aattgagcac aaaaacaaaa ttctggagat cttctaacgc
3661 gccgctcccg ccaggcacct atgaaccagc ataccttggt ggaaaagacc cgcgtgtgaa
3721 gggaggccca tctctacaac aggttatgag agaccaactc agacctttta cagagcccag
3781 agggaaacca ccaaaaccaa gtgtcctaga atcagcaaag aagaccatca ttaatgttct
3841 ggaacaaacc attgaccccc ctgaaaagtg gtcatatgcc caagcttgtg catcccttga
3901 caagacaacc tccagcggac acccgcatca cgtccggaag aatgactact ggagtggtga
3961 atctttcacg gggaaacttg cagaccaggc ctcaaaagca aatctcatgt atgaggaagg
4021 taagcacatg caaccagttt acaccgcagc actcaaagac gagctcgtga aaactgacaa
4081 aatttatggc aagatcaaga aaagactcct gtggggctct gacctatcca ccatgattcg
4141 atgcgccagg gcatttggtg gcctcatgga cgagctcaaa gcaaattgta tcacactccc
4201 tatcagagtt ggtatgaaca tgaatgaaga tggtcccata atatttgaaa agcactccag
4261 gtacaggtac cactatgatg ctgattattc ccgctgggat tccacacaac agcgggcagt
4321 gctggaagcg gcacttgaaa tcatggtgag attttctgct gagccacaat tggcacaaat
4381 agtggcagag gacctgctat caccaagtgt ggttgatgtg ggcgacttca aaattactat
4441 taatgaaggc ctaccatctg gcgtgccttg cacttcacaa tggaattcta ttacccactg
4501 gttactcacc ctatgtgccc tgtctgaagt gacaggacta ggccctgaca tcatacaagc
4561 caactccatg tactctttct atggtgatga tgagatagtg agcacagaca taaaattaga
4621 cccagagaaa ttgactgcaa aactcaaaga atatggtctt aaacccaccc ggcctgacaa
4681 gactgagggg ccactggtaa ttagtgagga cctgaatggg ttgactttcc tccgccgaac
4741 agtcacccgc gatccagcgg gttggtttgg aaagttggac caaaactcca tcctcagaca
4801 gctgtactgg acaaggggac ccaaccatga agaccccagt gagactatga taccacacgc
4861 acagagacct gtgcagctca tggcattgct cggagaatcc tccctacatg gaccctcatt
4921 ttacagcaag gttagcaagc tggttatatc tgaacttaaa gagggaggaa tggattttta
4981 tgtgcccaga caagagtcaa tgttcaggtg gatgaggttc tcagatctaa gcacatggga
5041 gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat gacgccgctc
5101 catctaatga tggtgctgct ggtctcgtac cagagggcaa taacgagacc cttcccctag
5161 aaccagttgc gggcgcagcc atagccgcac ccgtcactgg ccaaaataat ataattgacc
5221 cctggattag aacaaatttt gtgcaagcac caaatggaga gttcacagtg tcacccagaa
5281 actctcctgg agaaatttta ctaaacctag agttgggccc tgatctgaac ccttatttgg
5341 ctcatttgtc aaggatgtac aatggatatg ctggtggggt tgaagtccag gttctcctgg
5401 cagggaacgc gttcactgcc gggaagatcc tcttcgccgc tgtcccgcca aattttccgg
5461 tggaattctt aagcccagcc cagattacaa tgctcccaca tataatagta gatgttagga
5521 ctcttgaacc aattatgatc ccactacctg atgttaggaa tacattcttc cactataata
5581 atcagcccaa cagtcgcatg agattagtgg ctatgctcta cacccccctt agatctaatg
5641 gctcaggtga tgatgttttc actgtttctt gcagggtttt gactaggcct actcctgatt
5701 ttgagttcac ttatctagtg ccaccctctg ttgaatctaa gactaaaccc ttttctttac
5761 ccattctaac cctttctgag ctcacaaatt cgaggttccc ggttcccatc gattcgcttt
5821 tcaccgccca aaataatgtg ttgcaggtgc agtgtcaaaa tggcaggtgc acacttgacg
5881 gtgagctaca aggcacaacc cagttgctcc catctggcat ctgtgcgttc aggggacggg
5941 tgacagcaga aactgacaac cctgacaagt ggcacatgca actgcaaaac cttaatggca
6001 caacatatga cccaactgat gatgtgccag ccccactggg tacacctgac ttcaagggcg
6061 tcgtgtttgg gatggcaagc caaagaaatg tgggtaacga cgcgcccggc tcaaccaggt
6121 cccatgaggc ggtgatttca acctacagcc ccagatttgt tcctaaatta ggctctgtca
6181 atttcaaaag caatgacgat gatttccaat tgcagccaac aagattcaca ccagtgggca
6241 ttaatgatga tggcaaccaa ccattcagac aatgggaatt accagattat tcaggggtgc
6301 ttaccttgaa tatgaacctt gccccccctg ttgctccaaa tttccccggc gaacaattac
6361 tattcttcag atcttctgtg ccatgttcag gaggttacaa ccaaggtatt atagattgcc
6421 ttatccccca agaatggatc caacatttct accaggaatc agcaccttct cagtcagaag
6481 tggccctaat caggtacgtc aaccccgaca cgggtcgtac actgtttgag gcaaaattgc
6541 ataggtcagg ctatatcact gtggctcatt ctggagacta tcctcttgtt gttccggcta
6601 atggatactt tagatttgac tcttgggtaa atcagtttta ctcactcgcc ccaatgggaa
6661 ctgggaatgg gcgaaggagg gctcagtaat ggctggagct ttcattgcag gattggcggg
6721 tgacatgctc acgtcatccg tgggctccct ggtgaacgca ggggcaaacg ccatcaacca
6781 aaagatagac tttgaaaaca acaaacaact ccagtctgct tcttttcaac atgataaaga
6841 gatgctccaa gcgcaggtga acgcaaccaa gcagctgcaa tctgagatga tagccctaaa
6901 acagggggtt ttggccgcag gcggcttttc ccccactgat gcagcgaggg gggccatcgg
6961 tgcacccatg acaaaggtgc ttgactggtc tggcactcga tactgggctc ccaattccac
7021 aaagacaact ggttattcgg ggcaattcac ctcttcacct gtgcacatgc ccagcccgag
7081 tgtcccacaa tcaaaacccg caaagcccaa gtctttaggt tctccttctt cttctagtag
7141 tgtttacagt atgtctaccc aattaacttc tctaacatct ggctcttcta gtaatgcttc
7201 ttctgcttct acaaaattga caaatttgag ctccggctct tctcaaaaca gaacagcaga
7261 gtgggtgaac caacagagaa gtctcagccc tttcatgagt ggcgcactca atatctcgca
7321 tgtcacgcca ccttcaagta gggcctccag ttctgggacg gtctcaaccg tgcccaagga
7381 agttttggac tcctggacat ctgcattcaa cacacgcaga cagccgctct tcgcacacct
7441 cagattgagg ggggagtcac gtgtttagtg aaaagaaata attggctat
//