Typing tool
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Typing tool
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Complete norovirus genomes
| LC936411 | GII.17 | |
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| GII.P17 |
ORF1: 1..5098
ORF2: 5079..6695
ORF3: 6695..7474
LOCUS LC936411 7525 bp RNA linear VRL 05-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY250240/2025/JP RNA, nearly complete
genome.
ACCESSION LC936411
VERSION LC936411.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7525)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 90.89x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7525
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY250240/2025/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2025-04"
CDS <1..5098
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BHY91761.1"
/translation="SNDASVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQP
PPGETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDA
QNTAYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGLVLGVHKPPAAISL
AKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKL
KPLNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDALATYMRTLDLEEEKARKLSSK
SASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA
KKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA
KRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARAS
GLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD
ELKQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRS
ARIRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCP
KPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS
LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT
VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDFVIIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWS
GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN
HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5079..6695
/codon_start=1
/product="capsid protein VP1"
/protein_id="BHY91762.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6695..7474
/codon_start=1
/product="capsid protein VP2"
/protein_id="BHY91763.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSAPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRRLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFARLRVRGESRV"
ORIGIN
1 gtctaacgac gcttccgttg ccgttgctgg caaaaacaac aacaacgaca atgtaaaatc
61 ttcaagtgac agcttgtttt ctaacatgac tgttactttt aagaaagccc tcggggcgcg
121 gtctaagcag ccgcccccgg gagaaacaaa acaaacacta agaccaccaa ggccgccgac
181 accggaattg gtgaagaaga tacccccacc cccccccaat ggcgaggatg aaccaaaggt
241 aacgtataag gtgggagaag gtgtgtctgg gctgcccgac ttaacaaccg tggcacaacc
301 tgacgcacag aacacagcct atagtgtccc cccacttagc cagagagagg tcggcgaagc
361 tagagaaccg ttgcctggct ccattctgga aatgtgggat ggtgagatct accactatgg
421 gctgtatgtt gagcgggggc ttgtgctggg agtgcacaaa ccacctgctg caataagcct
481 tgccaaaatt gagttaacac cgctgtctct ctactggaga gtggtctaca ctccccagta
541 cttgatagct ccagagaccc tcaagaattt aaatggagag actttcccat acacggcctt
601 tgacaacaac tgttatgcct tctgttgttg ggttctagac ctcaacgact cctggcttag
661 cagaagaatg gtccaaagaa caaccggatt cttcagaccg tatcaggact ggaacagaaa
721 acccttacca accatggatg aaccaaaaat caagaaggcc gcgaatgctg ttctgtgtgc
781 tctctcctca ctcttcacta ggcccatcaa agatgtcatt ggaaagctta aaccactaaa
841 cattatgaac atactggcaa cttgtgattg gacttttgcg ggcatagtgg aatccatgat
901 ccttcttgct gaactctttg gggtgttctg gacgccccca gatgtgtctg caataattgc
961 tcccttactc ggtgactacg agatgcaagg ccccgaagac ctggccgtgg aacttgtgcc
1021 cgtggtaatg ggaggaatag gtttggtgtt aggattcacc aaggaaaaga tcggcaagat
1081 gctttcatca gctgcaacca cactcagggc ctgtaaggat ctaggatctt atgggttgga
1141 gatactcaaa ctggtcatga agtggttctt ccccaagaag gaggaggcca acgagttagc
1201 catggtgagg gccattgagg atgcagttct ggatctggag gcaatagaaa acaaccacat
1261 gaccgctctc cttaaggaca aagacgccct ggccacatac atgaggactc ttgacttgga
1321 agaagaaaaa gcaaggaaac tatcttccaa atcggcgtca cctgacatcg tgggcacagt
1381 aaacgcatta ttggcaagaa tagcagccgc caggtcactg gtccacaagg ctaaggagga
1441 gctctcgagc agacagagac ctgttgttgt aatgatatca ggtaggccag gtataggaaa
1501 gacccatctg gccagagagc tagccaagaa ggttgcgtca acactgtcag gcgaccaaag
1561 gattggactg atacccagaa atggcgtcga ccattgggac gcctacaaag gagagcgggt
1621 ggttctgtgg gatgactatg gcatgagcaa ccctatacag gacgcactga ggctccaaga
1681 attggctgac acctgtcctc tgaccctaaa ttgtgacaga attgaaaaca aaggaaaagt
1741 gttcgacagt gacgccataa tcataacgac caaccttgca aacccagcac cattggatta
1801 tgtcaacttt gaggcttgtt ccagacgcat agacttcttg gtgtatgcag acgcacctga
1861 catcgagaag gctaagcgtg actttcctgg ccaaccagat atgtggaaag accattacag
1921 accagacttc tcacacatta aacttcagct cgcaccacag ggaggctttg ataagagtgg
1981 caacacccca catggcaaag gcgtggttaa gtctctgacg attggctctc tgatcgccag
2041 ggcttctggc ttgctccatg agagaatgga tgaattcgag ctccaaggcc ccaacttacc
2101 aaccttcaat ttcgaccgta acaaagtcgc cgccttcaga caattggcag ctgaaaataa
2161 atacggtctt atggacacac tgagggtcgg caaccaactg aaaagtgtca aaaccctgga
2221 tgagctgaag caggccataa agaacatcac catcaagaag tgccagatag tgtacaatgg
2281 atgcacctac accatggaat ctgatgggag gaacaaggtt gtggttgaaa aggttcaaaa
2341 tgcaacagtc caaaccaaca atgaacttgc aggagcactc caccacctga gatctgcaag
2401 aataaggtat tatgtcaaat gtttccaaga agctatttac tctatactcc aaattgctgg
2461 tgcagccttc gtcaccacgc gcatcgtgag gcgcatgaac atctcaaacc tctggtcgaa
2521 gccacccgtc gaagagggtg atgagcctga agacaaaggg gggtgcccca agcccaggga
2581 tgaagatgac ctcactattg actccaaaga cattaaagca gaaggtaaga agggcaagaa
2641 caaatctggc cggggcaaga aacacacagc tttctcatcc aagggcctca gtgatgaaga
2701 gtacgatgag tacaagagaa tcagggagga gagaaatggc aagtactcaa tagaagaata
2761 cctccaggat agggatagat actatgaaga gcttgccatt gctaaggcca ctgaggaaga
2821 cttctgtgaa gaggaggaaa tcaaaattcg ccagagaatc ttccggccca ccaggaagca
2881 gcggaaagag gaaagagcca cgcttgggct cgtcacagga tcggaaatca gaaagaggaa
2941 cccagatgat tttaagccaa aaggaaaatt gtgggctgat gacaacagga gtgtggatta
3001 caatgagagg atagattttg aggctccccc aagtgtttgg tctaggatag tcaactttgg
3061 tacaggatgg ggattctggg tatccccaag tctctttata acttcaacac atgtcatacc
3121 aaaaggaatt actgaggcct ttggagttcc cattaaccaa attcaaattc acaaatctgg
3181 agagttttgc cgcttacggt ttccaaaacc aatcaggcca gacgtgagtg gaatgatctt
3241 ggaagagggt gcccctgaag gcactgttgt ttccattctc atcaagagga cgacagggga
3301 actgatgcct ctcgcagtca gaatgggaac tcatgccaca atgaaaatcc aaggtagaac
3361 ggtgggcggt caaatgggca tgcttctcac tggctcaaac gccaaaagca tggacctagg
3421 cacaacacca ggtgactgtg ggtgcccata catatacaaa aggggcaatg acttcgtgat
3481 cattggggtg cacactgctg cagcccgtgg aggtaacacg gtcatatgtg ccacccaggg
3541 gagtgaaggc gaagccaccc tcgaaggagg tgacaacaag ggcacctatt gtggagcccc
3601 catcttgggt cctggcaacg caccaaaatt gagcacaaaa acaaaattct ggagatcttc
3661 taacgcgccg ctcccgccag gcacctacga accagcatac cttggtggaa aagacccgcg
3721 tgtgaaggga ggcccatctc tacaacaggt tatgagagac caactcaaac cttttacaga
3781 gcccagaggg aagccaccaa aaccaagtgt cctagaatca gcaaagaaga ccatcattaa
3841 tgttctggaa caaaccattg acccccctga aaagtggtcg tatgcccaag cttgtgcatc
3901 cctcgacaag acaacctcca gtggataccc gcatcacgtc cggaagaatg actactggag
3961 tggtgaatcc ttcacgggga aacttgcaga ccaggcctca aaagcaaatc tcatgtatga
4021 ggaaggtaag cacatgcaac cagtttacac cgcagcactc aaagacgagc tcgtgaaaac
4081 tgacaaaatt tatggcaaga ttaagaaaag actcctgtgg ggctctgacc tatccaccat
4141 gattcgatgc gccagggcat ttggtggcct catggacgag ctcaaagcaa attgtatcac
4201 actccctatc agagttggta tgaacatgaa tgaagatggt cccataatat ttgaaaagca
4261 ctccaggtac aggtatcact atgatgctga ttattcccgc tgggattcca cacaacagcg
4321 ggcagtgctg gaagcggcac ttgaaatcat ggtgagattt tctgctgagc cacagttggc
4381 acaaatagtg gcagaggacc tgctatcacc aagtgtggtt gatgtgggcg atttcaaaat
4441 tactattaat gaaggcctac catctggcgt gccttgcact tcacaatgga attctattgc
4501 tcactggtta ctcaccctat gtgcactgtc tgaagtgaca ggactaggcc ctgacatcat
4561 acaagccaac tccatgtact ctttctatgg tgatgatgag attgtgagca cagacataaa
4621 attagaccca gagaaattga ctgcaaaact caaagaatat ggtcttaaac ccacccggcc
4681 tgacaagact gaggggccac tggtaattag tgaggacctg aatgggttga ctttcctccg
4741 ccgaacagtc acccgcgatc cagcgggttg gtttggaaag ttggaccaaa actccatcct
4801 cagacagctg tactggacaa ggggacccaa ccatgaagac cccagtgaga ctatgatacc
4861 acatgcacag agacctgtgc agctcatggc tttgctagga gaatcctccc tacatggacc
4921 ctcattttac agcaaggtta gcaaactggt tatatctgaa cttaaagagg gaggaatgga
4981 tttttatgtg cccagacaag agtcaatgtt caggtggatg aggttctcag atctaagcac
5041 atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg
5101 ccgctccatc taatgatggt gctgctggtc tcgtaccaga gggcaataac gagacccttc
5161 ccctagaacc agttgcgggc gcagccatag ccgcacccgt cactggccaa aataatataa
5221 ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc acagtgtcac
5281 ccagaaactc tcctggagaa attttactaa acctagagtt gggccctgat ctgaaccctt
5341 atttggctca tttgtcaagg atgtataatg gatatgctgg tggagttgaa gtccaggttc
5401 tcctggcagg gaacgcgttc actgccggga agatcctctt cgccgctgtc ccgccaaatt
5461 ttccggtgga attcttaagc ccagcccaga ttacaatgct cccacatata atagtagatg
5521 ttaggactct tgaaccaatt atgatcccat tacctgatgt taggaataca ttcttccact
5581 ataataatca gcccaacagc cgcatgagat tagtggctat gctctacacc cctcttagat
5641 ctaatggctc aggtgatgat gttttcactg tttcctgcag ggttttgact aggcctactc
5701 ctgattttga gttcacttat ctagtgccac cctctgttga atctaagact aaaccctttt
5761 ctttacccat tctaaccctt tctgagctca caaattcgag gttcccggtc cccatcgatt
5821 cgcttttcac cgcccaaaat aatgtgttgc aggtgcagtg tcaaaatggc aggtgcacac
5881 ttgacggtga gctacaaggc acaacccagt tgctcccatc tggcatctgt gcgttcaggg
5941 ggcgggtgac agcagaaact gacaatcctg acaagtggca catgcaactg caaaacctta
6001 atggcacaac atatgaccca actgatgatg tgccagcccc actgggtaca cctgacttca
6061 agggcgtcgt gtttgggatg gcaagccaaa gaaatgtggg taacgacgcg cccggctcaa
6121 ccaggtccca tgaagcggtg atttcaacct acagccccag gtttgttcct aaattaggct
6181 ctgtcaattt caaaagcaat gacgatgatt tccaactgca gccaacaaga ttcacaccag
6241 tgggcattaa tgatgatggc aaccaaccat tcagacaatg ggaactacca gattattcag
6301 gagtgcttac cttgaatatg aacctcgccc cccctgttgc tccaaatttc cctggcgaac
6361 aattactatt cttcagatct tctgtgccat gttcaggagg ttacaaccaa ggtattatag
6421 attgccttat cccccaagaa tggatccaac acttctacca ggaatcagca ccttctcagt
6481 cagaagtggc cctaatcagg tacgtcaacc ccgacacggg tcgtacactg tttgaggcaa
6541 aattgcatag gtcaggctat atcactgtgg ctcattctgg agactatcct cttgttgttc
6601 cggctaatgg atactttaga tttgactctt gggtaaatca gttttactca ctcgccccaa
6661 tgggaactgg gaatgggcga aggagggctc agtaatggct ggagctttca ttgcaggatt
6721 ggcgggtgac atgctcacgt catccgtggg ctccctggtg aacgcagggg caaacgccat
6781 caatcaaaag atagactttg aaaacaacaa acaactccag tctgcttcct ttcaacatga
6841 taaagagatg ctccaagcgc aggtgaacgc aaccaagcag ctgcaatctg agatgatagc
6901 cctaaaacag ggggttttgg ccgcaggcgg cttttccccc actgatgcag cgaggggggc
6961 catcggtgca cccatgacaa aggtgcttga ctggtctggc actcgatact gggctcccaa
7021 ttccacaaag acaactggtt attcggggca attcacctct tcacctgtgc acatgcccag
7081 cccgagtgcc ccacaatcaa aacccgcaaa gcccaagtct ctaggttctt cttcttcttc
7141 tagtagtgtt tatagtatgt ctacccaatt aacttctcta acatctggct cttctagtaa
7201 tgcttcttct gcttctacaa aattgacaaa tttgagctcc ggctcttctc aaaacagaac
7261 agcagagtgg gtgaaccaac agagaaggct cagccctttc atgagtggcg cgctcaatat
7321 ctcgcatgtc acgccacctt caagtagggc ctccagttct gggacggtct caaccgtgcc
7381 caaggaagtt ttggactcct ggacatctgc attcaacaca cacagacagc cgctcttcgc
7441 acgcctcaga gtgagggggg agtcacgtgt ttagtgaaaa gaaataattg gctataatat
7501 gatttcttca aaatttaaat ttggc
//