Typing tool
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Typing tool
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Complete norovirus genomes
| LC936409 | GII.17 | |
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| GII.P17 |
ORF1: 1..5089
ORF2: 5070..6686
ORF3: 6686..7465
LOCUS LC936409 7483 bp RNA linear VRL 05-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY242984/2025/JP RNA, nearly complete
genome.
ACCESSION LC936409
VERSION LC936409.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7483)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 44.96x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7483
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY242984/2025/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2025-03"
CDS <1..5089
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BHY91755.1"
/translation="ASVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPPG
ETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQKT
AYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKI
ELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSR
RMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPL
NIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEE
ANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSAS
PDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKV
ASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRD
FPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLL
HERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELK
QAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARI
RYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPRPR
DEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSE
IRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFI
TSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVS
ILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNA
PKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGES
FTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMI
RCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQ
RAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGL
KPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHED
PSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5070..6686
/codon_start=1
/product="capsid protein VP1"
/protein_id="BHY91756.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6686..7465
/codon_start=1
/product="capsid protein VP2"
/protein_id="BHY91757.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISYVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cgcttccgtt gccgttgctg gcaaaaacaa caacaacgac aatgtaaaat cttcaagtga
61 cagcttgttt tctaacatga ctgttacttt taagaaagcc ctcggggcgc ggtctaagca
121 gccgcccccg ggagaaacaa aacaaacact aagaccacca aggccgccga caccggaatt
181 ggtgaagaag atacccccac ccccccccaa tggcgaggat gaaccaaagg taacgtataa
241 ggtgggagaa ggtgtgtctg ggctgcccga cttaacaacc gtggcacaac ctgacgcaca
301 gaaaacagcc tatagtgtcc ccccacttag ccagagagag gtcggcgaag ctagagaacc
361 gttgcctggc tccattctgg aaatgtggga tggtgagatt taccactatg ggctgtatgt
421 tgagcggggg cttgtgctgg gagtgcacaa accacctgct gcaataagcc ttgccaaaat
481 tgagttaaca ccgctgtctc tctactggag agtggtctac actccccagt acttgatagc
541 tccagagacc ctcaagaatt tgaatggaga gactttccca tacacggcct ttgacaacaa
601 ctgttatgcc ttctgttgtt gggttctaga cctcaacgac tcctggctta gcagaagaat
661 ggtccaaaga acaaccggat tcttcagacc gtatcaggac tggaacagaa aacccttacc
721 aaccatggat gaaccaaaaa tcaagaaggc cgcgaatgct gttctgtgtg ctctctcctc
781 actcttcact aggcccatca aagatgtcat tggaaagctt aaaccactaa acattatgaa
841 catactggca acttgtgatt ggacttttgc gggcatagtg gaatccatga tccttcttgc
901 tgaactcttt ggggtgttct ggacgccccc agatgtgtct gcaataattg ctcccttact
961 cggtgactac gagatgcaag gccccgaaga cctggccgtg gaacttgtgc ccgtggtaat
1021 gggaggaata ggtttggtgt taggattcac caaggaaaag atcggcaaga tgctttcatc
1081 agctgcaacc acactcaggg cctgtaagga tctaggatct tatgggttgg agatactcaa
1141 actggtcatg aagtggttct tccccaagaa ggaggaggcc aacgagttag ccatggtgag
1201 ggccattgag gatgcagttc tggatttgga ggcaatagaa aacaaccaca tgaccactct
1261 ccttaaggac aaagacgccc tggccacata catgaggact cttgacttgg aagaagaaaa
1321 agcaaggaaa ctatcttcca aatcggcgtc acctgacatc gtgggcacag taaacgcatt
1381 attggcaaga atagcagccg ccaggtcact ggtccacaag gctaaggagg agctctcgag
1441 cagacagaga cctgttgttg taatgatatc aggtaggcca ggtataggaa agacccatct
1501 ggccagagag ctagccaaga aggttgcgtc aacactgtca ggcgaccaaa ggattggact
1561 gatacccaga aatggcgtcg accattggga cgcctacaaa ggagagcggg tggttctgtg
1621 ggatgactat ggcatgagca accctataca ggacgcactg aggctccaag aattggctga
1681 cacctgtcct ttgaccctaa attgtgacag aattgaaaac aaaggaaaag tgttcgacag
1741 tgacgccata atcataacga ccaaccttgc aaacccagca ccattggatt atgtcaactt
1801 tgaggcttgt tccagacgca tagacttctt ggtgtatgca gacgcacctg acatcgagaa
1861 ggctaagcgt gactttcctg gccaaccaga tatgtggaaa gaccattaca gaccagactt
1921 ctcacacatt aaacttcagc tcgcaccaca gggaggcttt gataagagtg gcaacacccc
1981 acatggcaaa ggcgtggtta agtctctgac gattggctct ctgatcgcca gggcttctgg
2041 cttgctccat gagagaatgg atgaattcga gctccaaggc cccaacttac caaccttcaa
2101 tttcgaccgt aacaaagtcg ccgccttcag acaattggca gctgaaaaca aatacggtct
2161 tatggacaca ctgagggtcg gcaaccaact gaaaagtgtc aaaaccctgg atgagctgaa
2221 gcaggccata aagaacatca ccatcaagaa gtgccagata gtgtacaatg gatgcaccta
2281 caccatggaa tctgatggga ggaacaaggt tgtggttgaa aaggttcaaa atgcaacagt
2341 ccaaaccaac aatgaacttg caggagcact ccaccacctg agatctgcaa gaataaggta
2401 ttatgtcaaa tgtttccaag aagctattta ctctatactc caaattgctg gtgcagcctt
2461 cgtcaccaca cgcatcgtga ggcgcatgaa catctcaaac ctctggtcga agccacccgt
2521 cgaagagggt gatgagcctg aagacaaagg ggggtgcccc aggcccaggg atgaagatga
2581 cctcactatt gactccaaag acattaaagc agaaggtaag aagggcaaga acaaatctgg
2641 ccggggcaag aaacacacag ctttctcatc caagggcctc agtgatgaag agtacgatga
2701 gtacaagaga atcagggagg agagaaatgg caagtactca atagaagaat acctccagga
2761 tagggataga tactatgaag agcttgccat tgctaaggcc actgaggaag acttctgtga
2821 agaggaggaa atcaaaattc gccagagaat cttccggccc accaggaagc agcggaaaga
2881 ggaaagagcc acgcttgggc tcgtcacagg atcggaaatc agaaagagga acccagatga
2941 ttttaagcca aaaggaaaat tgtgggctga tgacaacagg agcgtggact acaatgagag
3001 gatagatttt gaggctcccc caagtgtttg gtctaggata gtcaactttg gtacaggatg
3061 gggattctgg gtctccccaa gtctctttat aacttcaaca catgtcatac caaaaggaat
3121 tactgaggcc tttggagttc ccattaacca aattcaaatt cacaaatctg gagagttttg
3181 ccgcttgcgg tttccaaaac caatcaggcc agacgtgagt ggaatgatct tggaagaggg
3241 tgcccctgaa ggcactgttg tttccattct catcaagagg acgacagggg aactgatgcc
3301 tctcgcagtc agaatgggaa ctcatgccac aatgaaaatc caaggtagaa cggtgggcgg
3361 tcaaatgggc atgcttctca ctggctcaaa cgccaaaagc atggacctag gcacaacacc
3421 aggtgactgt gggtgcccat acatatacaa aaggggcaat gacttcgtgg tcattggggt
3481 gcacactgca gcagcccgtg gaggtaacac ggtcatatgt gccacacagg ggagtgaagg
3541 cgaagccacc ctcgaaggag gtgacaacaa gggcacctat tgtggagccc ccatcttggg
3601 tcctggcaac gcaccaaaat tgagcacaaa aacaaaattc tggagatctt ctaacgcgcc
3661 gctcccgcca ggcacctacg aaccagcata ccttggtgga aaagacccgc gtgtgaaggg
3721 aggcccatct ctacaacagg ttatgagaga ccaactcaaa ccttttacag agcccagagg
3781 gaagccacca aaaccaagtg tcctagaatc agcaaagaag accatcatta atgttctgga
3841 acaaaccatt gacccccctg aaaagtggtc atatgcccaa gcttgtgcat ccctcgacaa
3901 gacaacctcc agtggatacc cgcatcacgt ccggaagaat gactactgga gtggtgaatc
3961 cttcacgggg aaacttgcag accaggcctc aaaagcaaat ctcatgtatg aggaaggtaa
4021 gcacatgcaa ccagtttaca ccgcagcact caaagacgag ctcgtgaaaa ctgacaaaat
4081 ttatggcaag atcaagaaaa gactcctgtg gggctctgac ctatccacca tgattcgatg
4141 cgccagggca tttggtggcc tcatggacga gctcaaagca aattgtatca cactccctat
4201 cagagttggt atgaacatga atgaagatgg tcccataata tttgaaaagc actccaggta
4261 caggtaccac tatgatgctg attattcccg ctgggactcc acacaacagc gggcagtgct
4321 ggaagcggca cttgaaatca tggtgagatt ttctgctgag ccacagttgg cacaaatagt
4381 ggcagaggac ctgctatcac caagtgtggt tgatgtgggc gatttcaaaa ttactattaa
4441 tgaaggccta ccatctggcg tgccttgcac ttcacaatgg aattctattg cccactggtt
4501 actcacccta tgtgccctgt ctgaagtgac aggactaggc cctgacatca tacaagccaa
4561 ctctatgtac tctttctatg gtgatgatga gattgtgagc acagacataa aattagaccc
4621 agagaaattg actgcaaaac tcaaagaata tggtcttaaa cccacccggc ctgacaagac
4681 tgaggggcca ctggtaatta gtgaggacct gaatgggttg actttcctcc gccgaacagt
4741 cacccgcgat ccagcgggtt ggtttggaaa gttggaccaa aactccatcc tcagacagct
4801 gtactggaca aggggaccca accatgaaga ccccagtgag actatgatac cacacgcaca
4861 gagacctgtg cagctcatgg cattgctagg agaatcctcc ctacatggac cctcatttta
4921 cagcaaggtt agcaaactgg ttatatctga acttaaagag ggaggaatgg atttttatgt
4981 gcccagacaa gagtcaatgt tcaggtggat gaggttctca gatctaagca catgggaggg
5041 cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgaatgac gccgctccat
5101 ctaatgatgg tgctgctggt ctcgtaccag agggcaataa cgagaccctt cccctagaac
5161 cagttgcggg cgcagccata gccgcacccg tcactggcca aaataatata attgacccct
5221 ggattagaac aaattttgtg caagcaccaa atggagagtt cacagtgtca cccagaaact
5281 ctcctggaga aattttacta aacctagagt tgggccctga tctgaaccct tatttggctc
5341 atttgtcaag gatgtataat ggatatgctg gtggagttga agtccaggtt ctcctggcag
5401 ggaacgcgtt cactgccggg aagatcctct tcgccgctgt cccgccaaat tttccggtgg
5461 aattcttaag cccagcccag attacaatgc tcccacatat aatagtagat gttaggactc
5521 ttgaaccaat tatgatccca ttacctgatg ttaggaatac attcttccat tataataatc
5581 agcccaacag ccgcatgaga ttagtggcta tgctctacac cccccttaga tctaatggct
5641 caggtgatga tgttttcact gtttcttgca gggttttgac taggcctact cctgattttg
5701 agttcactta tttagtgcca ccctctgttg aatctaagac taaacccttt tctttaccca
5761 ttttaaccct ttctgagctc acaaattcga ggttcccggt ccccatcgat tcgcttttca
5821 ccgcccaaaa taatgtgttg caggtgcagt gtcaaaatgg caggtgcaca cttgacggtg
5881 agctacaagg cacaacccag ttgctcccat ctggcatctg tgcgttcagg ggacgggtga
5941 cagcagaaac tgacaatcct gacaagtggc acatgcaact gcaaaacctt aatggcacaa
6001 catatgaccc aactgatgat gtgccagccc cactgggtac acctgacttc aagggcgtcg
6061 tgtttgggat ggcaagccaa agaaatgtgg gtaacgacgc gcccggctca accaggtccc
6121 atgaggcggt gatttcaacc tacagcccca gatttgttcc taaattaggc tctgtcaatt
6181 tcaaaagcaa tgacgatgat ttccaattgc agccaacaag attcacacca gtgggcatta
6241 atgatgatgg caaccaacca ttcagacaat gggaactacc agattattca ggagtgctta
6301 ccttgaatat gaaccttgcc ccccctgttg ctccaaattt ccctggcgaa caattactat
6361 tcttcagatc ttctgtgcca tgttcaggag gttacaacca aggtattata gattgcctta
6421 tcccccaaga atggatccaa cacttctacc aggaatcagc accttctcag tcagaagtgg
6481 ccctaatcag gtacgtcaac cccgacacgg gtcgtacact gtttgaggca aaattgcata
6541 ggtcaggcta tatcactgtg gctcattctg gagactatcc tcttgttgtt ccggctaatg
6601 gatactttag atttgattct tgggtaaatc agttttactc actcgcccca atgggaactg
6661 ggaatgggcg aaggagggct cagtaatggc tggagctttc attgcaggat tggcgggtga
6721 catgctcacg tcatccgtgg gctccctggt gaacgcaggg gcaaacgcca tcaaccaaaa
6781 gatagacttt gaaaacaaca aacaactcca gtctgcttcc tttcaacatg ataaagagat
6841 gctccaagcg caggtgaacg caaccaagca gctgcaatct gagatgatag ccctaaaaca
6901 gggggttttg gccgcaggcg gcttttcccc cactgatgca gcgagggggg ccatcggtgc
6961 acccatgaca aaggtgcttg actggtctgg cactcgatac tgggctccca attccacaaa
7021 gacaactggt tattcggggc aattcacctc ttcacctgtg cacatgccca gcccgagtgt
7081 cccacaatca aaacccgcaa agcccaagtc tctaggttct tcttcttctt ctagtagtgt
7141 ttacagtatg tctacccaat taacttctct aacatctggc tcttctagta atgcttcttc
7201 tgcttctaca aaattgacaa atttgagctc cggctcttct caaaacagaa cagcagagtg
7261 ggtgaaccaa cagagaagtc tcagcccttt catgagtggc gcactcaata tctcgtatgt
7321 cacgccacct tcaagtaggg cctccagttc tgggacggtc tcaaccgtgc ccaaggaagt
7381 tttggactcc tggacatctg cattcaacac acacagacag ccgctcttcg cacacctcag
7441 agtgaggggg gagtcacgtg tttagtgaaa agaaataatt ggc
//