Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| LC936408 | GII.17 | |
|
|---|---|---|---|
| GII.P17 |
ORF1: 1..5056
ORF2: 5037..6653
ORF3: 6653..7432
LOCUS LC936408 7454 bp RNA linear VRL 05-JUN-2026
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY242344/2025/JP RNA, nearly complete
genome.
ACCESSION LC936408
VERSION LC936408.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7454)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Shinkai,T. and
Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2026) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; Hyakunincho
3-24-1, Shinjuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26.0.1
Genome Coverage :: 23.43x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7454
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY242344/2025/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2025-03"
CDS <1..5056
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BHY91752.1"
/translation="NDNVKSSSDSLFSNMTVTFKKALGARSKQPPPGETKQTLRPPRP
PTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTAYSVPPLSQRE
VGEAREPLPGSILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKIELTPLSLYWRV
VYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFR
PYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPLNIMNILATCDW
TFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVELVPVVMGGIGL
VLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIE
DAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSASPDIVGTVNALL
ARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIG
LIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKV
FDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDH
YRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQG
PNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNITIKKC
QIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARIRYYVKCFQEAI
YSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKPRDEDDLTIDSKD
IKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYY
EELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKP
KGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGIT
EAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELM
PLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDFVV
IGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWR
SSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLESAKK
TIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASK
ANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMD
ELKVNCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIM
VRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCA
LSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGP
LAISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQR
PVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWE
GDRNLAPSFVNEDGVE"
CDS 5037..6653
/codon_start=1
/product="capsid protein VP1"
/protein_id="BHY91753.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6653..7432
/codon_start=1
/product="capsid protein VP2"
/protein_id="BHY91754.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSAPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRRLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 caacgacaat gtaaaatctt caagtgacag cttgttttct aacatgactg ttacttttaa
61 gaaagccctc ggggcgcggt ctaagcagcc gcccccggga gaaacaaaac aaacactaag
121 accaccaagg ccgccgacac cggaattggt gaagaagata cccccacccc cccccaatgg
181 cgaggatgaa ccaaaggtaa cgtataaggt gggagaaggt gtgtctgggc tgcccgactt
241 aacaaccgtg gcacaacctg acgcacagaa cacagcctat agtgtccccc cacttagcca
301 gagagaggtc ggcgaagcta gagaaccgtt gcctggctcc attctggaaa tgtgggatgg
361 tgagatctac cactatgggc tgtatgttga gcgggggctt gtgctgggag tgcacaaacc
421 acctgctgca ataagccttg ccaaaattga gttaacaccg ctgtctctct actggagagt
481 ggtctacact ccccagtact tgatagctcc agagaccctc aagaatttaa atggagagac
541 tttcccatac acggcctttg acaacaactg ttatgccttc tgttgttggg ttctagacct
601 caacgactcc tggcttagca gaagaatggt ccaaagaaca accggattct tcagaccgta
661 tcaggactgg aacagaaaac ccttaccaac catggatgaa ccaaaaatca agaaggccgc
721 gaatgctgtt ctgtgtgctc tctcctcact cttcactagg cccatcaaag atgtcattgg
781 aaagcttaaa ccactaaaca ttatgaacat actggcaact tgtgattgga cttttgcggg
841 catagtggaa tccatgatcc ttcttgctga actctttggg gtgttctgga cgcccccaga
901 tgtgtctgca ataattgctc ccttactcgg tgactacgag atgcaaggcc ccgaagacct
961 ggccgtggaa cttgtgcccg tggtaatggg aggaataggt ttggtgttag gattcaccaa
1021 ggaaaagatc ggcaagatgc tttcatcagc tgcaaccaca ctcagggcct gtaaggatct
1081 aggatcttat gggttggaga tactcaaact ggtcatgaag tggttcttcc ccaagaagga
1141 ggaggccaac gagttagcca tggtgagggc cattgaggat gcagttctgg atctggaggc
1201 aatagaaaac aaccacatga ccactctcct taaggacaaa gacgccctgg ccacatacat
1261 gaggactctt gacttggaag aagaaaaagc aaggaaacta tcttccaaat cggcgtcacc
1321 tgacatcgtg ggcacagtaa acgcattatt ggcaagaata gcagccgcca ggtcactggt
1381 ccacaaggct aaggaggagc tctcgagcag acagagacct gttgttgtaa tgatatcagg
1441 taggccaggt ataggaaaga cccatctggc cagagagcta gccaagaagg ttgcgtcaac
1501 actgtcaggc gaccaaagga ttggactgat acccagaaat ggcgtcgacc attgggacgc
1561 ctacaaagga gagcgggtgg ttctgtggga tgactatggc atgagcaacc ctatacagga
1621 cgcactgagg ctccaagaat tggctgacac ctgtcctctg accctaaatt gtgacagaat
1681 tgaaaacaaa ggaaaagtgt tcgacagtga cgccataatc ataacgacca accttgcaaa
1741 cccagcacca ttggattatg tcaactttga ggcttgttcc agacgcatag acttcttggt
1801 gtatgcagac gcacctgaca tcgagaaggc taagcgtgac tttcctggcc aaccagatat
1861 gtggaaagac cattacagac cagacttctc acacattaaa cttcagctcg caccacaggg
1921 aggctttgat aagagtggca acaccccaca tggcaaaggc gtggttaagt ctctgacgat
1981 tggctctctg atcgccaggg cttctggctt gctccatgag agaatggatg aattcgagct
2041 ccaaggcccc aacttaccaa ccttcaattt cgaccgtaac aaagtcgccg ccttcagaca
2101 attggcagct gaaaataaat acggtcttat ggacacactg agggtcggca accaactgaa
2161 aagtgtcaaa accctggatg agctgaagca ggccataaag aacatcacca tcaagaagtg
2221 ccagatagtg tacaatggat gcacctacac catggaatct gatgggagga acaaggttgt
2281 ggttgaaaag gttcaaaatg caacagtcca aaccaacaat gaacttgcag gagcactcca
2341 ccacctgaga tctgcaagaa taaggtatta tgtcaaatgt ttccaagaag ctatttactc
2401 tatactccaa attgctggtg cagccttcgt caccacgcgc atcgtgaggc gcatgaacat
2461 ctcaaacctc tggtcgaagc cacccgtcga agagggtgat gagcctgaag acaaaggggg
2521 gtgccccaag cccagggatg aagatgacct cactattgac tccaaagaca ttaaagcaga
2581 aggtaagaag ggcaagaaca aatctggccg gggcaagaaa cacacagctt tctcatccaa
2641 gggcctcagt gatgaagagt acgatgagta caagagaatc agggaggaga gaaatggcaa
2701 gtactcaata gaagaatacc tccaggatag ggatagatac tatgaagagc ttgccattgc
2761 taaggccact gaggaagact tctgtgaaga ggaggaaatc aaaattcgcc agagaatctt
2821 ccggcccacc aggaagcagc ggaaagagga aagagccacg cttgggctcg tcacaggatc
2881 ggaaatcaga aagaggaacc cagatgattt taagccaaaa ggaaaattgt gggctgatga
2941 caacaggagt gtggattaca atgagaggat agattttgag gctcccccaa gtgtttggtc
3001 taggatagtc aactttggta caggatgggg attctgggtc tccccaagtc tctttataac
3061 ttcaacacat gtcataccaa aaggaattac tgaggccttt ggagttccca ttaaccaaat
3121 tcaaattcac aaatctggag agttttgccg cttgcggttt ccaaaaccaa tcaggccaga
3181 cgtgagtgga atgatcttgg aagagggtgc ccctgaaggc actgttgttt ccattctcat
3241 caagaggacg acaggggaac tgatgcctct cgcagtcaga atgggaactc atgccacaat
3301 gaaaatccaa ggtagaacgg tgggcggtca aatgggcatg cttctcactg gctcaaacgc
3361 caaaagcatg gacctaggca caacaccagg tgactgtggg tgcccataca tatacaaaag
3421 gggcaatgac ttcgtggtca ttggggtgca cactgctgca gcccgtggag gtaacacggt
3481 catatgtgcc acacagggga gtgaaggcga agccaccctc gaaggaggtg acaacaaggg
3541 cacctattgt ggagccccca tcttgggtcc tggcaacgca ccaaaattga gcacaaaaac
3601 aaaattctgg agatcttcta acgcgccgct cccgccaggc acctacgaac cagcatacct
3661 tggtggaaaa gacccgcgtg tgaagggagg cccatctcta caacaggtta tgagagacca
3721 actcaaacct tttacagagc ccagagggaa gccaccaaaa ccaagtgtcc tagaatcagc
3781 aaagaagacc atcattaatg ttctggaaca aaccattgac ccccctgaaa agtggtcgta
3841 tgcccaagct tgtgcatccc tcgacaagac aacctccagt ggatacccgc atcacgtccg
3901 gaagaatgac tactggagtg gtgaatcctt cacggggaaa cttgcagacc aggcctcaaa
3961 agcaaatctc atgtatgagg aaggtaagca catgcaacca gtttacaccg cagcactcaa
4021 agacgagctc gtgaaaactg acaaaattta tggcaagatc aagaaaagac tcctgtgggg
4081 ctctgaccta tccaccatga ttcgatgcgc cagggcattt ggtggcctca tggacgagct
4141 caaagtaaat tgtatcacac tccctatcag agttggtatg aacatgaatg aagatggtcc
4201 cataatattt gaaaagcact ccaggtacag gtatcactat gatgctgatt attcccgctg
4261 ggattccaca caacagcggg cagtgctgga agcggcactt gaaatcatgg tgagattttc
4321 tgctgagcca cagttggcac aaatagtggc agaggacctg ctatcaccaa gtgtggttga
4381 tgtgggcgat ttcaaaatta ctattaatga aggcctacca tctggcgtgc cttgcacttc
4441 acaatggaat tctattgctc actggttact caccctatgt gcactgtctg aagtgacagg
4501 actaggccct gacatcatac aagccaactc catgtactct ttctatggtg atgatgagat
4561 tgtgagcaca gacataaaat tagacccaga gaaattgact gcaaaactca aagaatatgg
4621 tcttaaaccc acccggcctg acaagactga ggggccactg gcaattagtg aggacctgaa
4681 tgggttgact ttcctccgcc gaacagtcac ccgcgatcca gcgggttggt ttggaaagtt
4741 ggaccaaaac tccatcctca gacagctgta ctggacaagg ggacccaacc atgaagaccc
4801 cagtgagact atgataccac acgcacagag acctgtgcag ctcatggcat tgctaggaga
4861 atcctcccta catggaccct cattttacag caaggttagc aaactggtta tatctgaact
4921 taaagaggga ggaatggatt tttatgtgcc cagacaagag tcaatgttca ggtggatgag
4981 gttctcagat ctaagcacat gggagggcga tcgcaatctg gctcccagtt ttgtgaatga
5041 agatggcgtc gaatgacgcc gctccatcta atgatggtgc tgctggtctc gtaccagagg
5101 gcaataacga gacccttccc ctagaaccag ttgcgggcgc agccatagcc gcacccgtca
5161 ctggccaaaa taatataatt gacccctgga ttagaacaaa ttttgtgcaa gcaccaaatg
5221 gagagttcac agtgtcaccc agaaactctc ctggagaaat tttactaaac ctagagttgg
5281 gccctgatct gaacccttat ttggctcatt tgtcaaggat gtataatgga tatgctggtg
5341 gagttgaagt ccaggttctc ctggcaggga acgcgttcac tgccgggaag atcctcttcg
5401 ccgctgtccc gccaaatttt ccggtggaat tcttaagccc agcccagatt acaatgctcc
5461 cacatataat agtagatgtt aggactcttg aaccaattat gatcccatta cctgatgtta
5521 ggaatacatt cttccactat aataatcagc ccaacagccg catgagatta gtggctatgc
5581 tctacacccc tcttagatct aatggctcag gtgatgatgt tttcactgtt tcttgcaggg
5641 ttttgactag gcctactcct gattttgagt tcacttatct agtgccaccc tctgttgaat
5701 ctaagactaa acccttttct ttacccattc taaccctttc tgagctcaca aattcgaggt
5761 tcccggtccc catcgattcg cttttcaccg cccaaaataa tgtgttgcag gtgcagtgtc
5821 agaatggcag gtgcacactt gacggtgagc tacaaggcac aacccagttg ctcccatctg
5881 gcatctgtgc gttcagggga cgggtgacag cagaaactga caatcctgac aagtggcaca
5941 tgcaactgca aaaccttaat ggcacaacat atgacccaac tgatgatgtg ccagccccac
6001 tgggtacacc tgacttcaag ggcgtcgtgt ttgggatggc aagccaaaga aatgtgggca
6061 acgacgcgcc cggctcaacc aggtcccatg aggcggtgat ttcaacctac agccccaggt
6121 ttgttcctaa attaggctct gtcaatttca aaagcaatga cgatgatttc caactgcagc
6181 caacaagatt cacaccagtg ggcattaatg atgatggcaa ccaaccattc agacaatggg
6241 aactaccaga ttattcagga gtgcttacct tgaatatgaa cctcgccccc cctgttgctc
6301 caaatttccc tggcgaacaa ttactattct tcagatcttc tgtgccatgt tcaggaggtt
6361 acaaccaagg tattatagat tgccttatcc cccaagaatg gatccaacac ttctaccagg
6421 aatcagcacc ttctcagtca gaagtggccc taatcaggta cgtcaacccc gacacgggtc
6481 gtacactgtt tgaggcaaaa ttgcataggt caggctatat cactgtggct cattctggag
6541 actatcctct tgttgttccg gctaatggat actttagatt tgactcttgg gtaaatcagt
6601 tttactcact cgccccaatg ggaactggga atgggcgaag gagggctcag taatggctgg
6661 agctttcatt gcaggattgg cgggtgacat gctcacgtca tccgtgggct ccctggtgaa
6721 cgcaggggca aacgccatca atcaaaagat agactttgaa aacaacaaac aactccagtc
6781 tgcttccttt caacatgata aagagatgct ccaagcgcag gtgaacgcaa ccaagcagct
6841 gcaatctgag atgatagccc taaaacaggg ggttttggcc gcaggcggct tttcccccac
6901 tgatgcagcg aggggggcca tcggtgcacc catgacaaag gtgcttgact ggtctggcac
6961 tcgatactgg gctcccaatt ccacaaagac aactggttat tcggggcaat tcacctcttc
7021 acctgtgcac atgcccagcc cgagtgcccc acaatcaaaa cccgcaaagc ccaagtctct
7081 aggttcttct tcttcttcta gtagtgttta tagtatgtcc acccaattaa cttctctaac
7141 atctggctct tctagtaatg cttcttctgc ttctacaaaa ttgacaaatt tgagctccgg
7201 ctcttctcaa aacagaacag cagagtgggt gaaccaacag agaaggctca gccctttcat
7261 gagtggcgcg ctcaatatct cgcatgtcac gccaccttca agtagggcct ccagttctgg
7321 gacggtctca accgtgccca aggaagtttt ggactcctgg acatctgcat tcaacacacg
7381 cagacagccg ctcttcgcac acctcagagt gaggggggag tcacgtgttt agtgaaaaga
7441 aataattggc tata
//