Typing tool
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Typing tool
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Complete norovirus genomes
| LC919492 | GII.17 | |
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| GII.P17 |
ORF1: 1..5097
ORF2: 5084..6694
ORF3: 6694..7473
LOCUS LC919492 7524 bp RNA linear VRL 20-FEB-2026
DEFINITION Norovirus GII GII/Hu/JP/2024/GII.17[GII.P17]/EF24-1 RNA, nearly
complete genome.
ACCESSION LC919492
VERSION LC919492.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Hayashi,T. and Fujii,Y.
TITLE Genome sequence of Norovirus GII/Hu/JP/2024/GII.17[GII.P17]/EF24-1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7524)
AUTHORS Hayashi,T. and Fujii,Y.
TITLE Direct Submission
JOURNAL Submitted (17-FEB-2026) Contact:Tsuyoshi Hayashi National Institute
of Infectious Diseases, Japan Institute for Health Security,
Department of Virology II; 4-7-1 Gakuen, Musashimurayama, Tokyo
2080011, Japan
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 25.0.1
Genome Coverage :: 28.5x
Sequencing Technology :: Illumina iSeq 100
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7524
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII/Hu/JP/2024/GII.17[GII.P17]/EF24-1"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2024"
gene <1..5097
/gene="ORF1"
CDS <1..5097
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BHR56392.1"
/translation="SNDASVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQP
PPGETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDA
QNTAYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL
AKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKL
KPLNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSK
SASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMLSGRPGIGKTHLARELA
KKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA
KRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARAS
GLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD
ELKQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRS
ARIRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCP
KPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS
LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT
VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPKPSVLESAKRTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWS
GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN
HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5084..6694
/gene="ORF2"
CDS 5084..6694
/gene="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BHR56393.1"
/translation="MASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQNN
IIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGGVE
VQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPDVR
NTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPPSV
ESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTTQL
LPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGMAS
QRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGINDDG
NQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCLIP
QEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVPAN
GYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6694..7473
/gene="ORF3"
CDS 6694..7473
/gene="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BHR56394.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLRAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSIPQSKPAKPKSLGSPSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 tctaacgacg cttccgttgc cgttgctggc aaaaacaaca acaacgacaa tgtaaaatct
61 tcaagtgaca gcttgttttc taacatgact gttactttta agaaagccct cggggcgcgg
121 tctaagcagc cgcccccggg agaaacaaaa caaacactaa gaccaccaag gccgccgaca
181 ccggaattgg tgaagaagat acccccaccc ccccccaatg gcgaggatga accaaaggta
241 acgtataagg tgggagaagg tgtgtctggg ctgcccgact taacaaccgt ggcacaacct
301 gacgcacaga acacagccta tagtgtcccc ccacttagcc agagagaggt cggcgaagct
361 agagaaccgt tgcctggctc cattctggaa atgtgggatg gtgagatcta ccactatggg
421 ctgtatgttg agcgggggca tgtgctggga gtgcacaaac cacctgctgc aataagcctt
481 gccaaaattg agttaacacc gctgtctctc tactggagag tggtctacac tccccagtac
541 ttgatagctc cagagaccct caagaattta aatggagaga ctttcccata cacggccttt
601 gacaacaact gttatgcctt ctgttgttgg gttctagacc tcaacgactc ctggcttagc
661 agaagaatgg tccaaagaac aaccggattc ttcagaccgt atcaggactg gaacagaaaa
721 cccttaccaa ccatggatga accaaaaatc aagaaggccg cgaatgctgt tctgtgtgct
781 ctctcctcac tcttcactag gcccatcaaa gatgtcattg gaaagcttaa accactaaac
841 attatgaaca tactggcaac ttgtgattgg acttttgcgg gcatagtgga atccatgatc
901 cttcttgctg aactctttgg ggtgttctgg acgcccccag atgtgtctgc aataattgct
961 cccttactcg gtgactacga gatgcaaggc cccgaagacc tggccgtgga acttgtgccc
1021 gtggtaatgg gaggaatagg tttggtgtta ggattcacca aggaaaagat cggcaagatg
1081 ctttcatcag ctgcaaccac actcagggcc tgtaaggatc taggatctta tgggttggag
1141 atactcaaac tggtcatgaa gtggttcttc cccaagaagg aggaggccaa cgagttagcc
1201 atggtgaggg ccattgagga tgcagttctg gatttggagg caatagaaaa caaccacatg
1261 accactctcc ttaaggacaa agacgccctg gccacataca tgaggactct tgacttggaa
1321 gaagaaaaag caaggaaact atcttccaaa tcggcgtcac ctgacatcgt gggcacagta
1381 aacgcattat tggcaagaat agcagccgcc agatcactgg tccacaaggc taaggaggag
1441 ctctcgagca gacagagacc tgttgttgta atgttatcag gtaggccagg tataggaaag
1501 acccatctgg ccagagagct agccaagaag gttgcgtcaa cactgtcagg cgaccaaagg
1561 attggactga tacccagaaa tggcgtcgac cactgggacg cctacaaagg agagcgggtg
1621 gttctgtggg atgactatgg catgagcaac cctatacagg acgcactgag gctccaagaa
1681 ttggctgaca cctgtcctct gaccctaaat tgtgacagaa ttgaaaacaa aggaaaagtg
1741 ttcgacagcg acgccataat cataacgacc aaccttgcaa acccagcacc attggattat
1801 gtcaactttg aggcttgttc cagacgcata gacttcttgg tgtatgcaga cgcacctgac
1861 atcgagaagg ctaagcgtga ctttcctggc cagccagata tgtggaaaga ccattacaga
1921 ccagacttct cacacattaa acttcagctc gcaccacagg gaggctttga taagagtggc
1981 aacaccccac atggcaaagg cgtggttaag tctctgacga ttggctcact gatcgccagg
2041 gcttctggct tgctccatga gagaatggat gaattcgagc tccaaggccc caacttacca
2101 accttcaatt tcgaccgtaa caaagtcgcc gccttcagac aattggcagc tgaaaacaaa
2161 tacggtctta tggacacact gagggtcggc aaccaactga aaagtgtcaa aaccctggat
2221 gagctgaagc aggccataaa gaacatcacc atcaagaagt gccagatagt gtacaatgga
2281 tgcacctaca ccatggaatc tgatgggagg aacaaggttg tggttgaaaa ggttcaaaat
2341 gcaacagtcc aaaccaacaa tgaacttgca ggagcactcc accacctgag atctgcaaga
2401 ataaggtatt atgtcaaatg tttccaagaa gctatttact ctatactcca aattgctggt
2461 gcagccttcg tcaccacacg catcgtgagg cgcatgaaca tctcaaacct ctggtcgaag
2521 ccacccgtcg aagagggtga tgagcctgaa gacaaagggg ggtgccccaa gcccagggat
2581 gaagatgacc tcactattga ctccaaagac attaaagcag aaggtaagaa gggcaagaac
2641 aaatctggcc ggggcaagaa acacacagct ttctcatcca agggcctcag tgatgaagag
2701 tacgatgagt acaagagaat cagggaggag agaaatggca agtactcaat agaagaatac
2761 ctccaggata gagatagata ctatgaagag cttgccattg ctaaggccac tgaggaagac
2821 ttctgtgaag aggaggaaat caaaattcgc cagagaatct tccggcccac caggaagcag
2881 cggaaagagg aaagagccac gcttgggctc gtcacaggat cggaaatcag aaagaggaac
2941 ccagatgatt ttaagccaaa aggaaaattg tgggctgatg acaacaggag tgtggactac
3001 aatgagagga tagattttga ggctccccca agtgtttggt ctaggatagt caactttggt
3061 acaggatggg gattctgggt ctccccaagt ctctttataa cttcaacaca tgtcatacca
3121 aaaggaatta ctgaggcctt tggagttccc attaaccaaa ttcaaattca caaatctgga
3181 gagttttgcc gcttgcggtt tccaaaacca atcaggccag acgtgagtgg aatgatcttg
3241 gaagagggtg cccctgaagg cactgttgtt tccattctca tcaagaggac gacaggggaa
3301 ctgatgcctc tcgcagtcag aatgggaact catgccacaa tgaaaatcca aggtagaacg
3361 gtgggcggtc aaatgggcat gcttctcact ggctcaaacg ccaaaagcat ggacctaggc
3421 acaacaccag gtgactgtgg gtgcccatac atatacaaaa ggggcaatga cttcgtggcc
3481 attggggtgc acactgcagc agcccgtgga ggtaacacgg tcatatgtgc cacacagggg
3541 agtgaaggcg aagccaccct cgaaggaggt gacaacaagg gcacctattg tggagccccc
3601 atcttgggtc ctggtaacgc accaaaattg agcacaaaaa caaaattctg gagatcttct
3661 aacgcgccgc tcccgccagg cacctacgaa ccagcatacc ttggtggaaa agacccgcgt
3721 gtgaagggag gcccatctct acaacaggtt atgagagacc aactcaaacc ttttacagag
3781 cccagaggga agccaccaaa accaagtgtc ctagaatcag caaagaggac catcattaat
3841 gttctggaac aaaccattga ccctcctgaa aagtggtcat atgcccaagc ttgtgcatcc
3901 ctcgacaaga caacctccag tggatacccg catcacgtcc ggaagaatga ctactggagt
3961 ggtgaatcct tcacggggaa acttgcagac caggcctcaa aagcaaatct catgtatgag
4021 gaaggtaagc acatgcagcc agtttacacc gcagcactca aagacgagct cgtgaaaact
4081 gacaaaattt atggcaagat caagaaaaga ctcctgtggg gctctgacct atccaccatg
4141 attcgatgcg ccagggcatt tggtggcctc atggacgagc tcaaagcaaa ttgtatcaca
4201 ctccctatca gagttggtat gaacatgaat gaagatggtc ccataatatt tgaaaagcac
4261 tccaggtaca ggtaccacta tgatgctgat tattcccgct gggattccac acaacagcgg
4321 gcagtgctgg aagcggcact tgaaatcatg gtgagatttt ctgctgagcc acagttggca
4381 caaatagtgg cagaggacct gctatcacca agtgtggttg atgtgggcga tttcaaaatt
4441 actattaatg aaggcctacc atctggcgtg ccttgcactt cacaatggaa ttctattgcc
4501 cactggttac tcaccctatg tgccctgtct gaagtgacag ggctaggccc tgacatcata
4561 caagccaact ccatgtactc tttctatggt gatgatgaga ttgtgagcac agacataaaa
4621 ttagacccag agaaattgac cgcaaaactc aaagaatatg gtcttaaacc cacccggcct
4681 gacaagactg aggggccact ggtaattagt gaggacctga atgggttgac tttcctccgc
4741 cgaacagtca cccgcgatcc agcgggttgg tttggaaagt tggaccaaaa ctccatcctc
4801 agacagctgt actggacaag gggacccaac catgaagacc ccagtgagac tatgatacca
4861 cacgcacaga gacctgtgca gctcatggca ttgctaggag aatcctccct acatggaccc
4921 tcattttaca gcaaggttag caaactggtt atatctgaac ttaaagaggg aggaatggat
4981 ttttatgtgc ccagacaaga gtcaatgttc aggtggatga ggttctcaga tctaagcaca
5041 tgggagggtg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgaatgacgc
5101 cgctccatct aatgatggtg ctgctggtct cgtaccagag ggcaataacg agacccttcc
5161 cctagaacca gttgcgggcg cagccatagc cgcacccgtc actggccaaa ataatataat
5221 tgacccctgg attagaacaa attttgtgca agcaccaaat ggagagttca cagtgtcacc
5281 cagaaactct cctggagaaa ttttattaaa tctagagttg ggccctgatc tgaaccctta
5341 tttggctcat ttgtcaagga tgtataatgg atatgctggt ggagttgaag tccaggttct
5401 cctggcaggg aacgcgttca ctgccgggaa gatcctcttc gccgctgtcc cgccaaattt
5461 tccggtggaa ttcttaagcc cagcccagat tacaatgctc ccacatataa tagtagatgt
5521 taggactctt gaaccaatta tgatcccatt acctgatgtt aggaatacat tcttccacta
5581 taataatcag cccaacagcc gcatgagatt agtggctatg ctctacaccc cccttagatc
5641 taatggctca ggtgatgatg ttttcactgt ttcttgcagg gttttgacta ggcctactcc
5701 tgattttgag ttcacttatc tagtgccacc ctctgttgaa tctaagacta aacccttttc
5761 tttacccatt ctaacccttt ctgagctcac aaattcgagg ttcccggtcc ccatcgattc
5821 gcttttcacc gcccaaaata atgttttgca ggtgcagtgt caaaatggca ggtgcacact
5881 tgacggtgag ctacaaggca caacccagtt gctcccatct ggcatctgtg cgttcagggg
5941 gcgggtgaca gcagaaactg acaatcctga caagtggcac atgcaactgc aaaaccttaa
6001 tggcacaaca tatgacccaa ctgatgatgt gccagcccca ctgggtacac ctgacttcaa
6061 gggcgtcgtg tttgggatgg caagccaaag aaatgtgggt aacgacgcgc ccggctcaac
6121 caggtcccat gaggcggtga tttcaaccta cagccccaga tttgttccta aattaggctc
6181 tgtcaatttc aaaagcaatg atgatgattt ccaattgcag ccaacaagat tcacaccagt
6241 gggcattaat gatgatggca accaaccatt tagacaatgg gaactaccag attattcagg
6301 agtgcttacc ttgaatatga accttgcccc ccctgttgct ccaaatttcc ctggcgaaca
6361 attactattc ttcagatctt ctgtgccatg ttcaggaggt tacaaccaag gtattataga
6421 ttgccttatc ccccaagaat ggatccaaca cttctaccag gaatcagcac cttctcagtc
6481 agaagtggcc ctaatcaggt acgtcaaccc cgacacgggt cgtacactgt ttgaggcaaa
6541 attgcatagg tcaggctata tcactgtggc tcattctgga gattatcctc ttgttgttcc
6601 ggctaatgga tactttagat ttgactcttg ggtaaatcag ttttactcac tcgccccaat
6661 gggaactggg aatgggcgaa ggagggctca gtaatggctg gagctttcat tgcaggattg
6721 gcgggtgaca tgctcacgtc atccgtgggc tccctggtga acgcaggggc aaacgccatc
6781 aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt tcaacatgat
6841 aaagagatgc tccgagcgca ggtgaacgca accaagcagc tgcaatctga gatgatagcc
6901 ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc gaggggggcc
6961 atcggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg ggctcccaat
7021 tccacaaaga caactggtta ttcggggcaa ttcacctctt cacctgtgca catgcccagc
7081 ccgagtatcc cacaatcaaa acccgcaaag cccaagtctc taggttctcc ttcttcttct
7141 agtagtgttt acagtatgtc tacccaatta acttctctaa catctggctc ttctagtaat
7201 gcttcttctg cttctacaaa attgacaaat ttgagctccg gctcttctca aaacagaaca
7261 gcagagtggg tgaaccaaca gagaagtctc agccctttca tgagtggcgc actcaatatc
7321 tcgcatgtca cgccaccttc aagtagggcc tccagttctg ggacggtctc aaccgtgccc
7381 aaggaagttt tggactcctg gacatctgca ttcaacacac acagacagcc gctcttcgca
7441 cacctcagag tgagggggga gtcacgtgtt tagtgaaaag aaataattgg ctataatatg
7501 atttcttcaa aatttaaatt tggc
//