Typing tool
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Typing tool
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Complete norovirus genomes
| LC918520 | GII.17 | |
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| GII.P17 |
ORF1: 1..5102
ORF2: 5083..6705
ORF3: 6705..7484
LOCUS LC918520 7575 bp RNA linear VRL 03-APR-2026
DEFINITION Norovirus GII NoV GII/Hu/JP/2023/GII.17[P17]/IWT2023008 RNA, nearly
complete genome.
ACCESSION LC918520
VERSION LC918520.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Mizukoshi,F., Doan,Y.H., Hirata-Saito,A., Tsukagoshi,H., Motoya,T.,
Kimura,R., Takahashi,T., Hayashi,Y., Matsushima,Y., Miyakawa,K.,
Sakon,N., Sadamasu,K., Yoshimura,K., Saruki,N., Suzuki,Y., Uema,T.,
Murakami,K., Katayama,K., Ryo,A., Kageyama,T. and Kimura,H.
TITLE Phylogenetic Analyses of RdRp Region and VP1 Gene in Human
Norovirus Genotype GII.17[P17] Variants
JOURNAL Microorganisms 14 (4), 770 (2026)
REMARK DOI:10.3390/microorganisms14040770
REFERENCE 2 (bases 1 to 7575)
AUTHORS Doan,Y.H., Mizukoshi,F., Kageyama,T. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2026) Contact:Yen Hai Doan Japan Institute for
Health Security, National Institute of Infectious Diseases,
Department of Diagnostic Testing and Technology Research; 4-7-1
Gakuen, Musashimurayama, Tokyo 208-0011, Japan
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 25
Genome Coverage :: 1507x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7575
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NoV GII/Hu/JP/2023/GII.17[P17]/IWT2023008"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2023"
gene <1..5102
/gene="POL"
CDS <1..5102
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BHR06904.1"
/translation="ASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQ
PPPGETKQIQKPPRPPTPELVKRIPPTPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPD
AQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAIS
LAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGK
LRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAREL
AKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEK
AKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARA
SGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTL
DGLKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLR
SARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGC
PKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSP
SLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEG
TVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYW
SGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
STMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGSLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGP
NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE
SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5083..6705
/gene="VP1"
CDS 5083..6705
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BHR06905.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6705..7484
/gene="VP2"
CDS 6705..7484
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BHR06906.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLASGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 tggcgtctaa cgacgcttcc gctgccgttg ctggcaaaaa caacaacaac gacaaggaaa
61 aatcttcaag tgacagcttg tttgctaaca tgtctgtcac ttttaagaaa gccctcgggg
121 cgcggtctaa acaaccgccc ccgggagaaa caaaacaaat acaaaaacca ccaaggccac
181 cgacaccgga attggtgaag agaatacctc caaccccacc caatggcgag gatgaaccag
241 ggatagtgta caaggtggga gagggtgtgt ctgggctgcc cgacctaaca actgtggtac
301 aacctgacgc acaaaacaca gcttatagtg ttcccccact tagccagaga gaagtcggcg
361 aagctaaaga accgctgcct ggctccattc tggaaatgtg ggatggtgag atctaccact
421 atgggctgta tgttgagcgg gggcatgtgc tcggagtaca caaaccacct gctgcaataa
481 gccttgccaa aattgaaata acaccgctgt ctctctactg gagagtggtc tacactcccc
541 agtatttgat agatccagga actcttaaga acttgagtgg agagactttc ccatacacgg
601 cctttgacaa caactgttat gccttctgtt gttgggtcct agacctcaac gactcctggc
661 ttagcaggag aatgatccaa agaacaactg gattcttcaa accttatcag gattggaaca
721 gaaaaccctt accaaccatg gatgaaccga aaatcaagaa ggccgcgaat gctgtcctat
781 gcgctctctc ctcacttttc actagaccca ttaaggacat cattggaaag cttagaccac
841 tgaacattct taatatactg gcaacctgcg attggacttt tgcaggcata gtggaatcct
901 tgatccttct tgctgaactc tttggggtgt tctggacacc cccagatgtg tctgcgatga
961 ttgctccctt actcggtgac tacgagatgc aaggccccga agacctggcc gtggaacttg
1021 tgcccgtggt gatgggagga ataggtttgg tgttaggatt caccaaagaa aagatcggca
1081 agatgctttc atcagctgcg accacactta gggcctgcaa ggacctagga tcttatggat
1141 tggagatact caaattggtc atgaagtggt tcttccccaa gaaggaggag gctaacgaac
1201 tagccatggt gagggccatt gaggatgcag tcctggattt ggaggcaata gaaaacaatc
1261 acatgaccac ccttctcaag gataaagaca gcctggccac atacatgagg actcttgact
1321 tggaagaaga gaaagcaagg aaactgtcaa ccaaatcggc gtcacctgac atcgtgggta
1381 caataaacgc attgttggct aggatagcag ccgccaggtc actggtccac aaggctaagg
1441 aggagctctc gagcagacag agacctgttg ttgtaatgat atcaggtaga ccaggtatag
1501 gaaagaccca tctggccaga gagctagcca agaaagttgc gtcaacactg tcaggcgacc
1561 aaaggattgg actggtacct aggaatggcg tcgaccattg ggacgcctac aagggagaaa
1621 gggtggtcct gtgggatgat tatggtatga gcaaccctat acaggacgca ctgaggctcc
1681 aagaattggc tgacacctgt cctctgaccc taaattgtga taggattgaa aacaaaggaa
1741 aagtgttcga cagtgatgcc ataattataa caaccaacct tgcaaaccca gcaccactag
1801 actatgtcaa ctttgaggcc tgctctagac gcatagactt cttggtgtat gcagacgcac
1861 ctgacattga gaaggctaag cgtgacttcc ctggccaacc agatatgtgg aaagaccatt
1921 tcagaccaga cttctcacac attaaacttc agctggcacc acagggaggt tttgacaaaa
1981 atggcaatac cccacatggc aaaggtgtgg taaagtccct gacgattggt tctctgatcg
2041 ccagggcctc cggcttgctc cacgagagaa tggatgaatt cgagctccaa ggttctgacc
2101 tgccaacctt caattttgac cgcaacaaag tcgccgcctt cagacaatta gcagctgaaa
2161 acaaatatgg tcttatggac acattgaggg tcggcaacca actgaaaagt gttaagaccc
2221 tggatgggct gaagcaggcc ataaagaaca tcagtatcaa gaagtgtcag atagtgtata
2281 atggatgcac ctataccatg gaatctgatg ggaggggcaa ggttgtggtt gaaaaggtac
2341 aaaacgcaac agttcaaacc aacaatgaac ttgtaggggc gctccaccac ctgagatctg
2401 caaggataag atattatgtt aaatgtttcc aagaagccat ttactctcta ctccaaattg
2461 ctggtgcagc ctttgtcacc tcacgcatcg tgaggcgcat gaacatatca aacctctggt
2521 cgaaaccacc catcgaggag ggtgatgagc ctgaagacag aggaggatgc cccaagccca
2581 gggatgaaga tgacctcact attgactcta gagacattaa agtggaaggg aagaagggca
2641 agaacaagtc tggccggggc aagaaacaca cagccttctc ttccaagggc ctcagtgatg
2701 aagagtacga tgagtacaag agaatcagag aggagaggaa tggcaaatac tcaatagagg
2761 aatacctcca agatagggac agatactatg aagagcttgc cattgctaag gccactgagg
2821 aggacttctg tgaggaggag gagatcaaaa tccgccagag aatcttccga cccaccagga
2881 agcagcggaa agaggaaagg gccacgcttg ggcttgtcac aggatcggaa atcagaaaga
2941 ggaatccaga tgactttaaa ccaaaaggaa aattgtgggc tgatgacaac aggagcgtgg
3001 attacaatga gaggatagat tttgaggctc ccccgagtgt ttggtctagg atagtcaact
3061 ttggcacagg ctgggggttc tgggtttctc caagcctctt tataacttca acacacgtca
3121 taccaaaagg aatcactgag gcctttggag tgcccataaa ccaaatccaa attcacaaat
3181 ctggagaatt ttgccgcttg cggtttccaa agccaattag accagacgtg agtgggatga
3241 tcttggaaga gggcgcccct gaaggcactg ttgtgtctat tctcatcaaa aggacaacag
3301 gggagctgat gcctcttgca gtcagaatgg ggactcatgc cacaatgaaa atccaaggta
3361 gaacggtggg tggtcagatg ggtatgcttc tcactggctc aaatgctaaa ggcatggatc
3421 taggcacaac gccaggtgac tgcggatgtc catacatata caaaaggggc aatgaccttg
3481 tggtcattgg ggtgcacact gcagcagctc gtggaggcaa cacggtcata tgtgccacac
3541 agggaagtga aggtgaagcc actcttgaag gaggtgacaa caagggtacc tattgtggag
3601 cccccatttt gggacctggc aatgcaccaa aattgagcac aaagacaaaa ttctggagat
3661 cctctaacgc accgcttccc ccaggtactt atgaaccagc ataccttggt gggagagacc
3721 cgcgcgtgaa gggaggccca tctctgcaac aagttatgag agaccaactt aaacctttta
3781 cagagcccag ggggaagcca ccaaacccaa atgtcttaga gtcagcaaag aagactatca
3841 tcaatgttct ggaacaaacc attgaccccc ctcaaaagtg gtcatatgcc caagcttgtg
3901 catccctcga taagacaacc tccagtggat acccgcacca cgtccggaag aatgactatt
3961 ggagtggtga atccttcaca ggaaaacttg cagatcaggc ttcaaaagca aatctcatgt
4021 atgaggaagg caagcacatg caaccagttt acaccgcagc actcaaagac gagctcgtga
4081 aaactgacaa aatttatggc aaaatcaaga aaagactcct gtggggttct gacctctcca
4141 caatgattcg atgcgccaga gcatttggtg gtctcatgga tgaattcaaa gcaaattgta
4201 ttacactccc tatcagagtt ggtatgaata tgaatgaaga tggtcccata atatttgaga
4261 aacactccag gtacaggtac cactatgatg ctgattactc ccgctgggac tccacacaac
4321 agcgggcagt gctggaagcg gcacttgaaa tcatggtgag attttctgct gagccacagc
4381 tggcacaaat agtggcagag gacctgctgt caccaagtgt ggttgatgtg ggcgatttca
4441 aaatcgctat caatgaaggc ctaccatctg gcgtgccttg cacctcacaa tggaattcta
4501 ttgcccactg gttacttacc ttgtgtgccc tttctgaagt gacaggatta ggtcctgaca
4561 tcatacaagc taactccatg tactctttct atggtgatga tgagattgtg agcacagaca
4621 taaaattgga cccagagaaa ttgaccgcaa agctcaaaga atatggcctt aaacccactc
4681 ggcccgacaa aactgagggg tcgttggtga ttagtgagga cctgaatggg ttgactttcc
4741 tccgccgaac agtcacccgt gatccagcag gttggtttgg aaagttggac caaaactcca
4801 tcctcaggca gttgtactgg acaagaggac ccaaccatga agaccccagt gagaccatga
4861 taccacacgc acaaagacct gtgcagctca tggcactact aggagaatcc tccctacatg
4921 gaccctcatt ttacagcaag gttagcaaat tagtcatatc tgaacttaaa gagggaggaa
4981 tggattttta tgtgcccaga caagagtcaa tgttcagatg gatgaggttc tcagatctaa
5041 gcacatggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat
5101 gacgccgctc catctaatga tggtgctgct ggtctcgtac cagagggcaa caacgagacc
5161 cttcccctag aaccagttgc gggcgcagct atagccgcac ccgtcactgg ccaaaataat
5221 ataattgacc cctggattag aacaaatttt gtgcaagcac caaatggaga gttcacagtg
5281 tcacccagaa actctcctgg agaaatttta ttaaatttag agttgggccc tgatttgaac
5341 ccttatttgg ctcatttgtc aaggatgtac aatgggtatg ctggtggagt ggaagttcag
5401 gttctcctgg cagggaacgc gttcactgcc ggaaagatcc tcttcgccgc cgtcccgcca
5461 aatttcccag tggaattctt aagcccagcc cagatcacaa tgctcccaca tttaatagta
5521 gatgttagga ctcttgaacc aattatgatc ccactccctg atgttaggaa tacattcttc
5581 cattatagta accagcctaa cagccgcatg agattagtgg ctatgctcta taccccactc
5641 agatctaatg gctcaggtga tgatgtcttt actgtttctt gcagggtttt gactaggcct
5701 actcccgatt ttgagttcac ttatttagtg ccaccttctg ttgaatctaa aactaagcct
5761 ttttccttac ctattttaac cctttctgag ctcacaaatt cgaggtttcc agtccccatc
5821 gattcgcttt tcaccgccca gaataatgtg ttgcaggtgc agtgtcaaaa tggcaggtgt
5881 acacttgatg gtgagttaca aggcacaacc cagttgctcc caactggcat ctgtgcattc
5941 agaggacggg tgacagcaca aattaaccaa cgtgacaggt ggcacatgca actgcaaaac
6001 ctcaatggca caacatatga cccaactgat gatgtgccag ccccgctggg tacacctgac
6061 ttcaagggcg tcgtgtttgg gatggtaagc caaagaaatg tgggtaatga tgcgcctggc
6121 tcaaccagag cccaacaggc gtgggtttca acctatagcc cccaatttgt ccccaaatta
6181 ggttctgtca atcttagaat tagtaataat gatgatttcc aattccagcc gacaaaattc
6241 acaccagtgg gcgtcaatga tgacgatgat gaccacccgt tcagacagtg ggaactacca
6301 aactattcag gggagcttac cttgaatatg aatcttgccc ccccagttgc tccaaatttt
6361 cctggtgaac aattgttatt cttcagatct ttcgtgccat gctcaggagg ttacaaccaa
6421 ggtattatag attgtcttat tccccaagaa tggatccaac atttctatca ggaatcagca
6481 ccctcccagt cagacgtggc cctaatcagg tatgtcaacc ccgatacggg acgtacactg
6541 tttgaagcaa aattgcacag atctggttac attactgtgg ctcactctgg agactatcct
6601 cttgttgttc cggctaatgg acactttaga tttgattctt gggtaaatca gttttactca
6661 ctcgccccaa tgggaactgg gaatgggcga aggagggctc agtaatggct ggggctttca
6721 ttgcaggatt ggcaggtgac atgctcacgt catctgtggg ctcccttgtg aacgcagggg
6781 caaacgccat caaccaaaag atagactttg aaaacaacaa acaactccag tctgcttcct
6841 ttcagcatga taaagagatg ctccaagcgc aggtgagggc aaccaagcag ctgcaatctg
6901 aaatgatagc cctaaaacag ggggttttgg ccgcaggcgg cttttccccc actgatgcag
6961 caaggggatc cattggtgca cccatgacaa aggtgcttga ctggtctggc actcgatact
7021 gggcgcccaa ttccacaaag acaactggct attcgggaca atttacctct tcacctgtgc
7081 atatgtctag cccaaatgct ccacaatcaa aacctgcaaa gcctaggtct ctagctcctt
7141 cctcttcttc tagcagtgtc tatagtatgt atactcaatc tactcatttg gcatctggct
7201 cttctagtaa tgcttcttct gcctccacaa aattgacaaa tttaagctct ggctcctctc
7261 aaaacagaac agcagagtgg gtaaatcaac agagaagtct tagccctttc atgagtggcg
7321 cacttaacat ctcacatgtc acgccaccct caagtagggc ttccagttct gggacggtct
7381 cgaccgtgcc caaggaagtt ttggactcct ggacgtctgc gtttaacaca cacagacagc
7441 cgctcttcgc acacctcaga gtgagggggg agtcacgtgt ttagtgaaaa gaaataattg
7501 gctataatgt gatttctttc taaatttggc taatttgtat cttttaaaaa aaaaaaaaaa
7561 aaaaaaaaaa aaaaa
//