Typing tool
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Typing tool
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Complete norovirus genomes
| LC918519 | GII.17 | |
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| GII.P17 |
ORF1: 2..5110
ORF2: 5091..6713
ORF3: 6713..7492
LOCUS LC918519 7583 bp RNA linear VRL 03-APR-2026
DEFINITION Norovirus GII NoV GII/Hu/JP/2023/GII.17[P17]/IWT2023007 RNA, nearly
complete genome.
ACCESSION LC918519
VERSION LC918519.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Mizukoshi,F., Doan,Y.H., Hirata-Saito,A., Tsukagoshi,H., Motoya,T.,
Kimura,R., Takahashi,T., Hayashi,Y., Matsushima,Y., Miyakawa,K.,
Sakon,N., Sadamasu,K., Yoshimura,K., Saruki,N., Suzuki,Y., Uema,T.,
Murakami,K., Katayama,K., Ryo,A., Kageyama,T. and Kimura,H.
TITLE Phylogenetic Analyses of RdRp Region and VP1 Gene in Human
Norovirus Genotype GII.17[P17] Variants
JOURNAL Microorganisms 14 (4), 770 (2026)
REMARK DOI:10.3390/microorganisms14040770
REFERENCE 2 (bases 1 to 7583)
AUTHORS Doan,Y.H., Mizukoshi,F., Kageyama,T. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2026) Contact:Yen Hai Doan Japan Institute for
Health Security, National Institute of Infectious Diseases,
Department of Diagnostic Testing and Technology Research; 4-7-1
Gakuen, Musashimurayama, Tokyo 208-0011, Japan
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 25
Genome Coverage :: 3775x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7583
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NoV GII/Hu/JP/2023/GII.17[P17]/IWT2023007"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2023"
gene 2..5110
/gene="POL"
CDS 2..5110
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BHR06901.1"
/translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR
SKQPPPGETKQIQKPPRPPTPELVKRIPPTPPNGEDEPGIVYKVGEGVSGLPDLTTVV
QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI
IGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK
LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV
KTLDGLKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALH
HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDR
GGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTT
PGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGSLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5091..6713
/gene="VP1"
CDS 5091..6713
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BHR06902.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6713..7492
/gene="VP2"
CDS 6713..7492
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BHR06903.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLASGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 aatgaagatg gcgtctaacg acgcttccgc tgccgttgct ggcaaaaaca acaacaacga
61 caaggaaaaa tcttcaagtg acagcttgtt tgctaacatg tctgtcactt ttaagaaagc
121 cctcggggcg cggtctaaac aaccgccccc gggagaaaca aaacaaatac aaaaaccacc
181 aaggccaccg acaccggaat tggtgaagag aatacctcca accccaccca atggcgagga
241 tgaaccaggg atagtgtaca aggtgggaga gggtgtgtct gggctgcccg acctaacaac
301 tgtggtacaa cctgacgcac aaaacacagc ttatagtgtt cccccactta gccagagaga
361 agtcggcgaa gctaaagaac cgctgcctgg ctccattctg gaaatgtggg atggtgagat
421 ctaccactat gggctgtatg ttgagcgggg gcatgtgctc ggagtacaca aaccacctgc
481 tgcaataagc cttgccaaaa ttgaaataac accgctgtct ctctactgga gagtggtcta
541 cactccccag tatttgatag atccaggaac tcttaagaac ttgagtggag agactttccc
601 atacacggcc tttgacaaca actgttatgc cttctgttgt tgggtcctag acctcaacga
661 ctcctggctt agcaggagaa tgatccaaag aacaactgga ttcttcaaac cttatcagga
721 ttggaacaga aaacccttac caaccatgga tgaaccgaaa atcaagaagg ccgcgaatgc
781 tgtcctatgc gctctctcct cacttttcac tagacccatt aaggacatca ttggaaagct
841 tagaccactg aacattctta atatactggc aacctgcgat tggacttttg caggcatagt
901 ggaatccttg atccttcttg ctgaactctt tggggtgttc tggacacccc cagatgtgtc
961 tgcgatgatt gctcccttac tcggtgacta cgagatgcaa ggccccgaag acctggccgt
1021 ggaacttgtg cccgtggtga tgggaggaat aggtttggtg ttaggattca ccaaagaaaa
1081 gatcggcaag atgctttcat cagctgcgac cacacttagg gcctgcaagg acctaggatc
1141 ttatggattg gagatactca aattggtcat gaagtggttc ttccccaaga aggaggaggc
1201 taacgaacta gccatggtga gggccattga ggatgcagtc ctggatttgg aggcaataga
1261 aaacaatcac atgaccaccc ttctcaagga taaagacagc ctggccacat acatgaggac
1321 tcttgacttg gaagaagaga aagcaaggaa actgtcaacc aaatcggcgt cacctgacat
1381 cgtgggtaca ataaacgcat tgttggctag gatagcagcc gccaggtcac tggtccacaa
1441 ggctaaggag gagctctcga gcagacagag acctgttgtt gtaatgatat caggtagacc
1501 aggtatagga aagacccatc tggccagaga gctagccaag aaagttgcgt caacactgtc
1561 aggcgaccaa aggattggac tggtacctag gaatggcgtc gaccattggg acgcctacaa
1621 gggagaaagg gtggtcctgt gggatgatta tggtatgagc aaccctatac aggacgcact
1681 gaggctccaa gaattggctg acacctgtcc tctgacccta aattgtgata ggattgaaaa
1741 caaaggaaaa gtgttcgaca gtgatgccat aattataaca accaaccttg caaacccagc
1801 accactagac tatgtcaact ttgaggcctg ctctagacgc atagacttct tggtgtatgc
1861 agacgcacct gacattgaga aggctaagcg tgacttccct ggccaaccag atatgtggaa
1921 agaccatttc agaccagact tctcacacat taaacttcag ctggcaccac agggaggttt
1981 tgacaaaaat ggcaataccc cacatggcaa aggtgtggta aagtccctga cgattggttc
2041 tctgatcgcc agggcctccg gcttgctcca cgagagaatg gatgaattcg agctccaagg
2101 ttctgacctg ccaaccttca attttgaccg caacaaagtc gccgccttca gacaattagc
2161 agctgaaaac aaatatggtc ttatggacac attgagggtc ggcaaccaac tgaaaagtgt
2221 taagaccctg gatgggctga agcaggccat aaagaacatc agtatcaaga agtgtcagat
2281 agtgtataat ggatgcacct ataccatgga atctgatggg aggggcaagg ttgtggttga
2341 aaaggtacaa aacgcaacag ttcaaaccaa caatgaactt gtaggggcgc tccaccacct
2401 gagatctgca aggataagat attatgttaa atgtttccaa gaagccattt actctctact
2461 ccaaattgct ggtgcagcct ttgtcacctc acgcatcgtg aggcgcatga acatatcaaa
2521 cctctggtcg aaaccaccca tcgaggaggg tgatgagcct gaagacagag gaggatgccc
2581 caagcccagg gatgaagatg acctcactat tgactctaga gacattaaag tggaagggaa
2641 gaagggcaag aacaagtctg gccggggcaa gaaacacaca gccttctctt ccaagggcct
2701 cagtgatgaa gagtacgatg agtacaagag aatcagagag gagaggaatg gcaaatactc
2761 aatagaggaa tacctccaag atagggacag atactatgaa gagcttgcca ttgctaaggc
2821 cactgaggag gacttctgtg aggaggagga gatcaaaatc cgccagagaa tcttccgacc
2881 caccaggaag cagcggaaag aggaaagggc cacgcttggg cttgtcacag gatcggaaat
2941 cagaaagagg aatccagatg actttaaacc aaaaggaaaa ttgtgggctg atgacaacag
3001 gagcgtggat tacaatgaga ggatagattt tgaggctccc ccgagtgttt ggtctaggat
3061 agtcaacttt ggcacaggct gggggttctg ggtttctcca agcctcttta taacttcaac
3121 acacgtcata ccaaaaggaa tcactgaggc ctttggagtg cccataaacc aaatccaaat
3181 tcacaaatct ggagaatttt gccgcttgcg gtttccaaag ccaattagac cagacgtgag
3241 tgggatgatc ttggaagagg gcgcccctga aggcactgtt gtgtctattc tcatcaaaag
3301 gacaacaggg gagctgatgc ctcttgcagt cagaatgggg actcatgcca caatgaaaat
3361 ccaaggtaga acggtgggtg gtcagatggg tatgcttctc actggctcaa atgctaaagg
3421 catggatcta ggcacaacgc caggtgactg cggatgtcca tacatataca aaaggggcaa
3481 tgaccttgtg gtcattgggg tgcacactgc agcagctcgt ggaggcaaca cggtcatatg
3541 tgccacacag ggaagtgaag gtgaagccac tcttgaagga ggtgacaaca agggtaccta
3601 ttgtggagcc cccattttgg gacctggcaa tgcaccaaaa ttgagcacaa agacaaaatt
3661 ctggagatcc tctaacgcac cgcttccccc aggtacttat gaaccagcat accttggtgg
3721 gagagacccg cgcgtgaagg gaggcccatc tctgcaacaa gttatgagag accaacttaa
3781 accttttaca gagcccaggg ggaagccacc aaacccaaat gtcttagagt cagcaaagaa
3841 gactatcatc aatgttctgg aacaaaccat tgacccccct caaaagtggt catatgccca
3901 agcttgtgca tccctcgata agacaacctc cagtggatac ccgcaccacg tccggaagaa
3961 tgactattgg agtggtgaat ccttcacagg aaaacttgca gatcaggctt caaaagcaaa
4021 tctcatgtat gaggaaggca agcacatgca accagtttac accgcagcac tcaaagacga
4081 gctcgtgaaa actgacaaaa tttatggcaa aatcaagaaa agactcctgt ggggttctga
4141 cctctccaca atgattcgat gcgccagagc atttggtggt ctcatggatg aattcaaagc
4201 aaattgtatt acactcccta tcagagttgg tatgaatatg aatgaagatg gtcccataat
4261 atttgagaaa cactccaggt acaggtacca ctatgatgct gattactccc gctgggactc
4321 cacacaacag cgggcagtgc tggaagcggc acttgaaatc atggtgagat tttctgctga
4381 gccacagctg gcacaaatag tggcagagga cctgctgtca ccaagtgtgg ttgatgtggg
4441 cgatttcaaa atcgctatca atgaaggcct accatctggc gtgccttgca cctcacaatg
4501 gaattctatt gcccactggt tacttacctt gtgtgccctt tctgaagtga caggattagg
4561 tcctgacatc atacaagcta actccatgta ctctttctat ggtgatgatg agattgtgag
4621 cacagacata aaattggacc cagagaaatt gaccgcaaag ctcaaagaat atggccttaa
4681 acccactcgg cccgacaaaa ctgaggggtc gttggtgatt agtgaggacc tgaatgggtt
4741 gactttcctc cgccgaacag tcacccgtga tccagcaggt tggtttggaa agttggacca
4801 aaactccatc ctcaggcagt tgtactggac aagaggaccc aaccatgaag accccagtga
4861 gaccatgata ccacacgcac aaagacctgt gcagctcatg gcactactag gagaatcctc
4921 cctacatgga ccctcatttt acagcaaggt tagcaaatta gtcatatctg aacttaaaga
4981 gggaggaatg gatttttatg tgcccagaca agagtcaatg ttcagatgga tgaggttctc
5041 agatctaagc acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg
5101 cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaaca
5161 acgagaccct tcccctagaa ccagttgcgg gcgcagctat agccgcaccc gtcactggcc
5221 aaaataatat aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt
5281 tcacagtgtc acccagaaac tctcctggag aaattttatt aaatttagag ttgggccctg
5341 atttgaaccc ttatttggct catttgtcaa ggatgtacaa tgggtatgct ggtggagtgg
5401 aagttcaggt tctcctggca gggaacgcgt tcactgccgg aaagatcctc ttcgccgccg
5461 tcccgccaaa tttcccagtg gaattcttaa gcccagccca gatcacaatg ctcccacatt
5521 taatagtaga tgttaggact cttgaaccaa ttatgatccc actccctgat gttaggaata
5581 cattcttcca ttatagtaac cagcctaaca gccgcatgag attagtggct atgctctata
5641 ccccactcag atctaatggc tcaggtgatg atgtctttac tgtttcttgc agggttttga
5701 ctaggcctac tcccgatttt gagttcactt atttagtgcc accttctgtt gaatctaaaa
5761 ctaagccttt ttccttacct attttaaccc tttctgagct cacaaattcg aggtttccag
5821 tccccatcga ttcgcttttc accgcccaga ataatgtgtt gcaggtgcag tgtcaaaatg
5881 gcaggtgtac acttgatggt gagttacaag gcacaaccca gttgctccca actggcatct
5941 gtgcattcag aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg cacatgcaac
6001 tgcaaaacct caatggcaca acatatgacc caactgatga tgtgccagcc ccgctgggta
6061 cacctgactt caagggcgtc gtgtttggga tggtaagcca aagaaatgtg ggtaatgatg
6121 cgcctggctc aaccagagcc caacaggcgt gggtttcaac ctatagcccc caatttgtcc
6181 ccaaattagg ttctgtcaat cttagaatta gtaataatga tgatttccaa ttccagccga
6241 caaaattcac accagtgggc gtcaatgatg acgatgatga ccacccgttc agacagtggg
6301 aactaccaaa ctattcaggg gagcttacct tgaatatgaa tcttgccccc ccagttgctc
6361 caaattttcc tggtgaacaa ttgttattct tcagatcttt cgtgccatgc tcaggaggtt
6421 acaaccaagg tattatagat tgtcttattc cccaagaatg gatccaacat ttctatcagg
6481 aatcagcacc ctcccagtca gacgtggccc taatcaggta tgtcaacccc gatacgggac
6541 gtacactgtt tgaagcaaaa ttgcacagat ctggttacat tactgtggct cactctggag
6601 actatcctct tgttgttccg gctaatggac actttagatt tgattcttgg gtaaatcagt
6661 tttactcact cgccccaatg ggaactggga atgggcgaag gagggctcag taatggctgg
6721 ggctttcatt gcaggattgg caggtgacat gctcacgtca tctgtgggct cccttgtgaa
6781 cgcaggggca aacgccatca accaaaagat agactttgaa aacaacaaac aactccagtc
6841 tgcttccttt cagcatgata aagagatgct ccaagcgcag gtgagggcaa ccaagcagct
6901 gcaatctgaa atgatagccc taaaacaggg ggttttggcc gcaggcggct tttcccccac
6961 tgatgcagca aggggatcca ttggtgcacc catgacaaag gtgcttgact ggtctggcac
7021 tcgatactgg gcgcccaatt ccacaaagac aactggctat tcgggacaat ttacctcttc
7081 acctgtgcat atgtctagcc caaatgctcc acaatcaaaa cctgcaaagc ctaggtctct
7141 agctccttcc tcttcttcta gcagtgtcta tagtatgtat actcaatcta ctcatttggc
7201 atctggctct tctagtaatg cttcttctgc ctccacaaaa ttgacaaatt taagctctgg
7261 ctcctctcaa aacagaacag cagagtgggt aaatcaacag agaagtctta gccctttcat
7321 gagtggcgca cttaacatct cacatgtcac gccaccctca agtagggctt ccagttctgg
7381 gacggtctcg accgtgccca aggaagtttt ggactcctgg acgtctgcgt ttaacacaca
7441 cagacagccg ctcttcgcac acctcagagt gaggggggag tcacgtgttt agtgaaaaga
7501 aataattggc tataatgtga tttctttcta aatttggcta atttgtatct tttaaaaaaa
7561 aaaaaaaaaa aaaaaaaaaa aaa
//