Typing tool
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Typing tool
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Complete norovirus genomes
| LC918515 | GII.17 | |
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| GII.P17 |
ORF1: 1..5103
ORF2: 5084..6700
ORF3: 6700..7479
LOCUS LC918515 7572 bp RNA linear VRL 03-APR-2026
DEFINITION Norovirus GII NoV GII/Hu/JP/2025/GII.17[P17]/IBR2025017 RNA, nearly
complete genome.
ACCESSION LC918515
VERSION LC918515.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Mizukoshi,F., Doan,Y.H., Hirata-Saito,A., Tsukagoshi,H., Motoya,T.,
Kimura,R., Takahashi,T., Hayashi,Y., Matsushima,Y., Miyakawa,K.,
Sakon,N., Sadamasu,K., Yoshimura,K., Saruki,N., Suzuki,Y., Uema,T.,
Murakami,K., Katayama,K., Ryo,A., Kageyama,T. and Kimura,H.
TITLE Phylogenetic Analyses of RdRp Region and VP1 Gene in Human
Norovirus Genotype GII.17[P17] Variants
JOURNAL Microorganisms 14 (4), 770 (2026)
REMARK DOI:10.3390/microorganisms14040770
REFERENCE 2 (bases 1 to 7572)
AUTHORS Doan,Y.H., Mizukoshi,F., Kageyama,T. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2026) Contact:Yen Hai Doan Japan Institute for
Health Security, National Institute of Infectious Diseases,
Department of Diagnostic Testing and Technology Research; 4-7-1
Gakuen, Musashimurayama, Tokyo 208-0011, Japan
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 25
Genome Coverage :: 1042x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7572
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NoV GII/Hu/JP/2025/GII.17[P17]/IBR2025017"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2025"
gene <1..5103
/gene="POL"
CDS <1..5103
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BHR06889.1"
/translation="MASNDASVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSK
QPPPGETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQP
DAQNTAYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
SLAKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLND
SWLSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIG
KLKPLNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLS
SKSASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
LAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
KAKRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIAR
ASGLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT
LDELKQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNTTVQTNNELAGALHHL
RSARIRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPAEEGDEPEDKGG
CPKPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
PSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
DCGCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPIL
GPGNAPKLSTKTKFWRSSNMPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPQPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDY
WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD
LSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKMTAKL
KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG
PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
ESMFRWMRFSDLSTWEGDRNLAPSLVNEDGVE"
gene 5084..6700
/gene="VP1"
CDS 5084..6700
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BHR06890.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6700..7479
/gene="VP2"
CDS 6700..7479
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BHR06891.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 atggcgtcta acgacgcttc cgttgccgtt gctggcaaaa acaacaacaa cgacaatgta
61 aaatcttcaa gtgacagctt gttttctaac atgactgtta cttttaagaa agccctcggg
121 gcgcggtcta agcagccgcc cccgggagaa acaaaacaaa cactaagacc gccaaggccg
181 ccgacaccgg aattggtgaa gaagataccc ccaccccccc ccaatggcga ggatgaacca
241 aaggtaacgt ataaggtggg agaaggtgtg tctgggctgc ccgacttaac aaccgtggca
301 caacctgacg cacagaacac agcctatagt gtccccccac tcagccagag agaggtcggc
361 gaagctagag aaccgttgcc tggctccatt ctggaaatgt gggatggtga gatctaccac
421 tatgggctgt atgttgagcg agggcatgtg ctgggagtgc acaaaccacc tgctgcaata
481 agccttgcca aaattgagtt aacaccgcta tctctctact ggagagtggt ctacactccc
541 cagtacttga tagctccaga gaccctcaag aatttaaatg gagagacttt cccatacacg
601 gcctttgaca acaactgtta tgccttctgt tgttgggttc tagacctcaa cgactcctgg
661 cttagcagaa gaatggtcca aagaacaacc ggattcttca gaccgtatca ggactggaac
721 agaaaaccct taccaaccat ggatgaacca aaaatcaaga aggccgcgaa tgctgttctg
781 tgtgctctct cctcactctt cactaggccc atcaaggatg tcattggaaa gcttaaacca
841 ctaaacatta tgaacatact ggcaacttgt gattggactt ttgcgggcat agtggaatcc
901 atgatccttc ttgctgaact ctttggggtg ttctggacgc ccccagatgt gtctgcaata
961 attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc cgtggaactt
1021 gtgcccgtgg taatgggagg aataggtttg gtgttaggat tcaccaagga aaagatcggc
1081 aagatgcttt catcagctgc aaccacactc agggcctgta aggatctagg atcttatggg
1141 ttggagatac tcaaactggt catgaagtgg ttcttcccca agaaggagga ggccaacgag
1201 ttagccatgg tgagggccat tgaggatgca gttctggatt tggaggcaat agaaaacaac
1261 cacatgacca ctctccttaa ggacaaagac gccctggcca catacatgag gactcttgac
1321 ttggaagaag aaaaagcaag gaaactatct tccaaatcgg cgtcacctga catcgtgggc
1381 acagtaaacg cattattggc aagaatagca gccgccaggt cactggtcca caaggctaag
1441 gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag gccaggtata
1501 ggaaagaccc atctggccag agagctagcc aagaaggttg catcaacact gtcaggcgac
1561 caaaggattg gactgatacc cagaaatggc gtcgaccatt gggacgccta caaaggagag
1621 cgggtggttc tgtgggatga ctatggcatg agcaacccca tacaggacgc gctgaggctc
1681 caagaattgg ctgacacctg tcctctgacc ctaaattgtg acagaattga aaacaaagga
1741 aaagtgtttg acagtgacgc tataatcata acgaccaacc ttgcaaaccc agcaccattg
1801 gattatgtca actttgaggc ctgttccaga cgcatagact tcttggtgta tgcagacgca
1861 cctgacatcg agaaggctaa gcgtgacttc cctggccaac cagatatgtg gaaagaccat
1921 tacagaccag acttctcaca cattaaactt cagctcgcac cacagggagg ctttgataag
1981 agtggcaaca ccccacatgg caaaggtgtg gttaagtctc tgacgattgg ttctctgatc
2041 gccagggctt ctggcttact ccatgagaga atggatgaat tcgagctcca aggccccaac
2101 ttaccaacct tcaatttcga ccgtaacaaa gttgccgcct tcagacaatt ggcagctgaa
2161 aacaaatacg gtcttatgga cacactgagg gtcggcaacc aactgaaaag tgtcaaaacc
2221 ctggatgagc tgaaacaggc tataaagaac atcaccatca agaagtgcca gatagtgtac
2281 aacggatgca cctacaccat ggaatctgat gggaggaaca aggttgtggt tgaaaaggtt
2341 caaaatacaa cagtccaaac caacaatgag cttgcaggag cactccacca cctgagatct
2401 gcaagaataa ggtattatgt caaatgtttc caagaagcta tttactctat actccaaatt
2461 gctggtgcag ccttcgtcac cacacgcatc gtgaggcgca tgaacatctc aaacctctgg
2521 tcgaagccac ccgccgaaga gggtgatgag cctgaagaca aaggggggtg ccccaagccc
2581 agggatgaag atgacctcac tattgactcc aaagacatta aagcagaagg taagaagggc
2641 aagaacaaat ctggccgggg caagaaacac acagctttct catccaaggg cctcagtgat
2701 gaagagtacg atgagtacaa gagaatcagg gaggagagaa atggcaagta ctcgatagaa
2761 gaatacctcc aggataggga tagatactat gaagagctcg ccattgctaa ggccactgag
2821 gaagacttct gtgaagagga ggaaatcaaa attcgccaga gaatcttccg gcccaccagg
2881 aagcagcgga aagaggaaag agccacgctt gggctcgtca caggatcgga aatcagaaag
2941 aggaacccag atgattttaa gccaaaagga aaattgtggg ctgatgataa caggagtgtg
3001 gactacaatg agaggataga ttttgaggct cccccaagtg tttggtctag gatagtcaac
3061 tttggtacag ggtggggatt ctgggtctcc ccaagtctct ttataacttc aacacatgtc
3121 ataccaaaag gaatcactga ggcctttggg gttcccatta accaaattca aattcacaaa
3181 tctggagagt tttgccgctt gcggtttcca aaaccaatca ggccagacgt gagtggaatg
3241 atcttggaag agggtgcccc tgaaggcact gttgtttcca ttctcatcaa gaggacgaca
3301 ggggaactga tgcctctcgc agtcagaatg ggaactcatg ccacaatgaa aatccaaggt
3361 agaacggtgg gcggtcaaat gggcatgctt ctcactggct caaatgccaa aagcatggac
3421 ctaggcacaa caccaggtga ctgtgggtgc ccatacatat acaaaagggg caatgacttc
3481 gtggtcattg gggtgcatac tgcagcagcc cgtggaggta acacggttat atgtgccaca
3541 caggggagtg agggcgaagc caccctcgaa ggaggtgaca acaagggcac ctattgtgga
3601 gcccccatct tgggtcctgg caacgcacca aaattgagca caaaaacaaa attctggaga
3661 tcttctaaca tgccgctccc gccaggcacc tatgaaccag cataccttgg tggaaaagac
3721 ccgcgtgtga agggaggccc atctctacaa caggttatga gagaccaact caaacctttt
3781 acagagccca gagggaagcc accacaacca agtgtcctag aatcagcaaa gaagaccatc
3841 attaatgttc tggaacaaac cattgacccc cctgaaaagt ggtcatatgc ccaagcttgt
3901 gcatccctcg acaagacaac ctccagtgga tacccgcatc acgtccggaa gaatgactac
3961 tggagtggtg aatccttcac ggggaaactt gcagaccagg cttcaaaagc aaatctcatg
4021 tatgaggaag gtaagcacat gcaaccagtt tacaccgcag cactcaaaga cgagctcgta
4081 aaaactgaca aaatttatgg caagatcaag aaaagactcc tgtggggctc tgacctatcc
4141 accatgattc gatgcgccag ggcatttggt ggcctcatgg acgagctcaa agcaaattgt
4201 atcacactcc ctatcagagt tggtatgaac atgaatgaag atggtcccat aatatttgaa
4261 aagcactcca ggtacaggta ccactatgat gctgattatt cccgctggga ttccacacaa
4321 cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc tgagccacag
4381 ttggcacaaa tagttgcaga ggacctgcta tcaccaagtg tggttgatgt gggcgatttc
4441 aaaattacta ttaatgaagg cctaccatct ggcgtgcctt gcacttcaca atggaattct
4501 attgcccact ggttactcac cctatgcgcc ctgtctgaag tgacaggact aggccctgac
4561 atcatacaag ccaactccat gtactctttc tatggtgatg atgagattgt gagcacagac
4621 ataaaattag acccagaaaa aatgactgca aaactcaaag aatatggcct taaacccacc
4681 cggcctgaca agactgaggg accactggta attagtgagg acctgaatgg gttgactttc
4741 ctccgccgaa cagtcactcg cgatccagcg ggttggtttg gaaagttgga ccaaaactcc
4801 atcctcagac agctgtactg gacaagggga cccaaccatg aagaccccag tgagactatg
4861 ataccacacg cacagagacc tgtgcagctc atggcattgc taggagaatc ctccctacat
4921 ggaccctcat tttacagcaa ggttagcaag ctggttatat ctgaacttaa agagggagga
4981 atggattttt atgtgcccag acaagagtca atgttcaggt ggatgaggtt ctcagatcta
5041 agcacatggg agggcgatcg caatctggct cccagtcttg tgaatgaaga tggcgtcgaa
5101 tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca ataacgagac
5161 ccttccccta gaaccagttg cgggcgcagc catagccgca cccgtcactg gccaaaataa
5221 tataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag agttcacagt
5281 atcacccaga aactctcctg gagaaatttt actaaactta gagttgggcc ctgatctgaa
5341 cccttatttg gctcatttgt caaggatgta taatggatat gctggtggag ttgaagtcca
5401 ggttctcctg gcagggaacg cgttcactgc cgggaagatc ctcttcgccg ctgtcccgcc
5461 aaattttccg gtggaattct taagcccagc ccagattaca atgctcccac atataatagt
5521 agatgttagg actcttgaac caattatgat cccattacct gatgttagga atacattctt
5581 tcattataat aatcagccca acagccgcat gagattagtg gctatgctct acacccccct
5641 tagatctaat ggctcaggtg atgatgtttt cactgtttct tgcagggttt tgactaggcc
5701 tactcctgat tttgagttca cttatctagt gccaccctct gttgaatcta agactaaacc
5761 cttttcttta cccattctaa ccctttctga gctcacaaat tcgaggttcc cggtccccat
5821 cgattcgctt ttcaccgccc aaaataatgt gttgcaggtg cagtgtcaaa atggcaggtg
5881 cacacttgac ggtgagctac aaggcacaac ccagttgctc ccatctggca tctgtgcgtt
5941 caggggacgg gtgacagcag aaactgacaa tcctgacaag tggcacatgc aactgcaaaa
6001 ccttaatggc acaacatatg acccaactga tgatgtgcca gccccactgg gtacacctga
6061 cttcaagggc gtcgtgtttg ggatggcaag ccaaagaaat gtgggtaacg acgcgcccgg
6121 ctcaaccagg tcccatgagg cggtgatttc aacctacagc cccagatttg ttcctaaatt
6181 aggctctgtc aatttcaaaa gcaatgacga tgatttccaa ttgcagccaa cgagattcac
6241 accagtgggc attaatgatg atggcaacca accattcaga caatgggaac taccagatta
6301 ttcaggggtg cttaccttga atatgaacct tgccccccct gttgctccaa atttccctgg
6361 cgaacaatta ctattcttca gatcttctgt gccatgttca ggaggttaca accaaggtat
6421 tatagattgc cttatccccc aagaatggat ccaacatttc taccaggaat cagcaccttc
6481 tcagtcagaa gtggccctaa tcaggtacgt caaccccgac acgggtcgta cactgtttga
6541 ggcaaaattg cataggtcag gctatatcac tgtggctcat tctggagact atcctcttgt
6601 tgttccggct aatggatatt ttaggtttga ttcttgggta aatcagtttt actcactcgc
6661 cccaatggga actgggaatg ggcgaaggag ggctcagtaa tggctggagc tttcattgca
6721 ggattggcgg gtgacatgct cacgtcatcc gtgggctccc tggtgaacgc aggggcaaac
6781 gccatcaacc aaaagataga ctttgaaaac aacaaacaac tccagtctgc ttcctttcaa
6841 catgataaag agatgctcca agcgcaggtg aacgcaacca agcagctgca atctgagatg
6901 atagccctaa aacagggggt tttggccgca ggcggctttt cccccactga cgcagcgagg
6961 ggggccatcg gtgcacccat gacaaaggtg cttgactggt ctggcactcg atactgggct
7021 cccaattcca caaagacaac tggttattcg gggcaattca cctcttcacc tgtgcacatg
7081 cccagcccga gtgtcccaca atcaaaaccc gcaaagccca agtctctagg ttcttcttct
7141 tcttctagta gtgtttacag tatgtctacc caattaactt ctctaacatc tggctcttct
7201 agtaatgctt cttctgcttc tacaaaattg acaaatttga gctccggctc ttctcaaaac
7261 agaacagcag agtgggtgaa ccaacagaga agtctcagcc ctttcatgag tggcgcactc
7321 aacatctcgc atgtcacgcc accttcaagt agggcctcca gttctgggac ggtctcaacc
7381 gtgcccaagg aagttttgga ctcctggaca tctgcattca acacacgcag acagccgctc
7441 ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaaat aattggctat
7501 aatatgattt ctttaaaatt taaatttggc taatttgtat cttttaaaaa aaaaaaaaaa
7561 aaaaaaaaaa aa
//