Typing tool
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Typing tool
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Complete norovirus genomes
| LC918513 | GII.17 | |
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| GII.P17 |
ORF1: 1..5096
ORF2: 5077..6693
ORF3: 6693..7472
LOCUS LC918513 7490 bp RNA linear VRL 03-APR-2026
DEFINITION Norovirus GII NoV GII/Hu/JP/2025/GII.17[P17]/IBR2025015 RNA, nearly
complete genome.
ACCESSION LC918513
VERSION LC918513.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Mizukoshi,F., Doan,Y.H., Hirata-Saito,A., Tsukagoshi,H., Motoya,T.,
Kimura,R., Takahashi,T., Hayashi,Y., Matsushima,Y., Miyakawa,K.,
Sakon,N., Sadamasu,K., Yoshimura,K., Saruki,N., Suzuki,Y., Uema,T.,
Murakami,K., Katayama,K., Ryo,A., Kageyama,T. and Kimura,H.
TITLE Phylogenetic Analyses of RdRp Region and VP1 Gene in Human
Norovirus Genotype GII.17[P17] Variants
JOURNAL Microorganisms 14 (4), 770 (2026)
REMARK DOI:10.3390/microorganisms14040770
REFERENCE 2 (bases 1 to 7490)
AUTHORS Doan,Y.H., Mizukoshi,F., Kageyama,T. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2026) Contact:Yen Hai Doan Japan Institute for
Health Security, National Institute of Infectious Diseases,
Department of Diagnostic Testing and Technology Research; 4-7-1
Gakuen, Musashimurayama, Tokyo 208-0011, Japan
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 25
Genome Coverage :: 663x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7490
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NoV GII/Hu/JP/2025/GII.17[P17]/IBR2025015"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2025"
gene <1..5096
/gene="POL"
CDS <1..5096
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BHR06883.1"
/translation="NDASVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPP
PGETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQ
NTAYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLA
KIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLK
PLNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKS
ASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGKPGIGKTHLARELAK
KVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAK
RDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASG
LLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDE
LKQAIKNITIKKCHIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSA
RIRYYVKCFQEAIYSILQVAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPK
PRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSL
FITSTHVIPKGITEAFGVPIKQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTV
VSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPG
NAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSG
ESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLST
MIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNH
EDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5077..6693
/gene="VP1"
CDS 5077..6693
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BHR06884.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNGRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6693..7472
/gene="VP2"
CDS 6693..7472
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BHR06885.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSRSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 ctaacgacgc ttccgttgcc gttgctggca aaaacaacaa caacgacaat gtaaaatctt
61 caagtgacag cttgttttct aacatgactg ttacttttaa gaaagccctc ggggcgcggt
121 ctaagcagcc gcccccggga gaaacaaaac aaacactaag accaccaagg ccgccgacac
181 cggaattggt gaagaagata cccccacccc cccccaatgg cgaggatgaa ccaaaggtaa
241 cgtataaggt gggagaaggt gtgtctgggc tgcccgactt aacaacagtg gcacagcctg
301 acgcacagaa cacagcctat agtgtccccc cacttagcca gagagaggtc ggcgaagcta
361 gagaaccgtt gcctggctcc attctggaaa tgtgggatgg tgagatctac cactatgggc
421 tgtatgttga gcgggggcat gtgctgggag tgcacaaacc acctgctgca ataagccttg
481 ccaaaataga gttaacaccg ctgtctctct actggagagt ggtctacact ccccagtact
541 tgatagctcc agagaccctc aagaatttaa atggagagac tttcccatac acggcctttg
601 acaacaactg ttatgccttc tgttgttggg ttctagacct caacgactcc tggcttagca
661 gaagaatggt ccaaagaaca accggattct tcagaccgta tcaggactgg aacagaaaac
721 ccttaccaac catggatgaa ccaaaaatca agaaggccgc gaatgctgtt ctgtgtgctc
781 tctcctcact cttcactagg cccatcaaag atgttattgg aaagcttaaa ccactaaaca
841 ttatgaacat actggcaact tgtgattgga cttttgcggg catagtggaa tccatgatcc
901 ttcttgctga actctttggg gtgttctgga cgcccccaga tgtgtctgca ataattgctc
961 ccttactcgg tgactacgag atgcaaggcc ccgaagacct ggccgtggaa cttgtgcccg
1021 tggtaatggg aggaataggt ttggtgttag gattcaccaa ggaaaagatc ggcaagatgc
1081 tttcatcagc tgcaaccaca ctcagggcct gtaaggatct agggtcttat gggttggaga
1141 tactcaaact ggtcatgaag tggttcttcc ccaagaagga agaggccaac gagttagcca
1201 tggtgagggc cattgaagat gcagttctgg atttggaggc aatagaaaac aaccacatga
1261 ccactctcct taaggacaaa gacgccctgg ccacatacat gaggactctt gacttggaag
1321 aagaaaaagc aaggaaacta tcttccaaat cggcgtcacc tgacatcgtg ggcacagtaa
1381 acgcattatt ggcaagaata gcagccgcca ggtcactggt ccacaaggct aaggaggagc
1441 tctcgagcag acagagacct gttgttgtaa tgatatcagg taagccaggt ataggaaaga
1501 cccatctggc cagagagcta gccaagaagg ttgcgtcaac actgtcaggc gaccaaagga
1561 ttggactgat acccagaaat ggcgtcgacc attgggacgc ctacaaagga gagcgggtgg
1621 ttctatggga tgattatggc atgagcaacc ctatacagga cgcactgagg ctccaagaat
1681 tggctgacac ctgtcctctg accctaaatt gtgacagaat tgaaaacaaa ggaaaagtgt
1741 tcgacagtga cgccataatc ataacgacca accttgcaaa cccagcacca ttggattatg
1801 tcaactttga ggcttgttcc agacgcatag acttcttggt gtatgcagac gcacctgaca
1861 tcgagaaggc taagcgtgac tttcctggcc aaccagatat gtggaaagac cattacagac
1921 cagacttctc acacattaaa cttcagctcg caccacaggg aggctttgat aagagtggca
1981 acaccccaca tggcaaaggc gtggttaagt ctctgacgat tggctctctg atcgccaggg
2041 cttctggctt gctccatgag agaatggatg aattcgagct ccaaggcccc aacttaccaa
2101 ccttcaattt cgaccgtaac aaagtcgccg ccttcagaca attggcagct gaaaacaaat
2161 acggtcttat ggacacactg agggtcggca accaactgaa aagtgtcaaa accctggatg
2221 agctgaagca ggccataaag aacatcacca tcaagaagtg ccatatagtg tacaatggat
2281 gcacctacac catggaatct gatgggagga acaaggttgt ggttgaaaag gttcaaaatg
2341 caacagtcca aaccaacaat gaacttgcag gagcactcca ccacctgaga tctgcaagaa
2401 taaggtatta tgtcaaatgt ttccaagaag ctatttactc tatactccaa gttgctggtg
2461 cagccttcgt caccacgcgc atcgtgaggc gcatgaacat ctcaaacctc tggtcgaagc
2521 cacccgtcga agagggtgat gagcctgaag acaaaggggg gtgccccaag cccagggatg
2581 aagatgacct cactattgac tccaaagaca ttaaagcaga aggtaagaag ggcaagaaca
2641 aatctggccg gggcaagaaa cacacagctt tctcatccaa gggcctcagt gatgaagagt
2701 acgacgagta caagagaatc agggaggaga gaaatggcaa gtactcaata gaagaatacc
2761 tccaggatag ggatagatac tatgaagagc ttgccattgc taaggccact gaggaagact
2821 tctgtgaaga ggaggaaatc aaaattcgcc agagaatctt ccggcccacc aggaagcagc
2881 ggaaagagga aagagccacg cttgggctcg tcacaggatc ggaaatcaga aagaggaacc
2941 cagatgattt taagccaaaa ggaaaattgt gggctgatga caacaggagt gtggactaca
3001 atgagaggat agattttgag gctcccccaa gtgtttggtc taggatagtc aactttggta
3061 caggatgggg attctgggtc tccccaagtc tctttataac ttcaacacat gtcataccaa
3121 aaggaatcac tgaggccttt ggagttccca ttaaacaaat tcaaattcac aaatctggag
3181 agttttgccg cttgcggttt ccaaaaccaa tcaggccaga cgtgagtgga atgatcttgg
3241 aagagggtgc ccctgaaggc actgttgttt ccattctcat caagaggacg acaggggaac
3301 tgatgcctct cgcagtcaga atgggaactc atgccacaat gaaaatccaa ggtagaacgg
3361 tgggcggtca aatgggcatg cttctcactg gctcaaacgc caaaagcatg gacctaggca
3421 caacaccagg tgactgtggg tgcccataca tatacaaaag gggcaatgac ttcgtggtca
3481 ttggggtgca cactgcagca gcccgtggag gtaacacggt catatgtgcc acacagggga
3541 gtgaaggcga agccaccctc gaaggaggtg acaacaaggg cacctattgt ggagccccca
3601 tcttgggtcc tggcaacgca ccaaaattga gcacaaaaac aaaattctgg agatcttcta
3661 acgcgccgct cccgccaggc acctacgaac cagcatacct tggtggaaaa gacccgcgtg
3721 tgaagggagg cccatctcta caacaggtta tgagagacca actcaaacct tttacagagc
3781 ccagagggaa gccaccaaaa ccaagtgtcc tagaatcagc aaagaagacc atcatcaatg
3841 ttctggaaca aaccattgac ccccctgaaa agtggtcata tgcccaagct tgtgcatccc
3901 tcgacaagac aacctccagt ggatacccgc atcacgtccg gaagaatgac tactggagtg
3961 gtgaatcctt cacggggaaa cttgcagacc aggcctcaaa agcaaatctc atgtatgagg
4021 aaggtaagca catgcaacca gtctacaccg cagcactcaa agacgagctc gtgaaaactg
4081 acaaaattta tggcaagatc aagaaaagac tcctgtgggg ctctgaccta tccaccatga
4141 ttcgatgcgc cagggcattt ggtggcctca tggacgagct caaagcaaat tgtatcacac
4201 tccctatcag agttggtatg aacatgaatg aagatggtcc cataatattt gaaaagcact
4261 ccaggtacag gtaccactat gatgctgatt attcccgctg ggattccaca caacagcggg
4321 cagtgctaga agcggcactt gaaatcatgg tgagattttc tgctgagcca cagttggcac
4381 aaatagtggc agaggacctg ctatcaccaa gtgtggttga tgtgggcgat ttcaaaatta
4441 ctattaatga aggcctacca tctggcgtgc cttgcacttc acaatggaat tctattgccc
4501 actggttact caccctatgt gccctgtctg aagtgacagg actaggccct gacatcatac
4561 aagccaactc catgtactct ttctatggtg atgatgagat tgtgagcaca gacataaaat
4621 tagacccaga gaaattgact gcaaaactca aagaatatgg tcttaaaccc acccggcctg
4681 acaagactga ggggccgctg gtaattagtg aggacctgaa tgggttgact ttcctccgcc
4741 gaacagtcac ccgcgatcca gcgggttggt ttggaaagtt ggaccaaaat tccatcctca
4801 gacagctgta ctggacaagg ggacccaacc atgaagaccc cagtgagact atgataccac
4861 acgcacagag acctgtgcag ctcatggcat tgctaggaga atcctcccta catggaccct
4921 cattttacag caaggttagc aaactggtta tatctgaact taaagaggga ggaatggatt
4981 tttatgtgcc cagacaagag tcaatgttca ggtggatgag gttctcagat ctaagcacat
5041 gggagggcga tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc gaatgacgcc
5101 gctccatcta atgatggtgc tgctggtctc gtaccagagg gcaataacga gacccttccc
5161 ctagaaccag ttgcgggcgc agccatagcc gcacccgtca ctggccaaaa taatataatt
5221 gacccctgga ttagaacaaa ttttgtgcaa gcaccaaatg gagagttcac agtgtcaccc
5281 agaaactctc ctggagaaat tttactaaac ctagagttgg gccctgatct gaacccttat
5341 ttggctcatt tgtcaaggat gtataatgga tatgctggtg gagttgaagt ccaggttctc
5401 ctggcaggga acgcgttcac tgccgggaag atcctcttcg ccgctgtccc gccaaatttt
5461 ccggtggaat tcttaagccc agcccagatt acaatgctcc cacatataat agtagatgtt
5521 aggactcttg aaccaattat gatcccatta cctgatgtta ggaacacatt cttccactat
5581 aataatcagc ccaacggccg catgagatta gtggctatgc tctacacccc ccttagatct
5641 aatggctcag gtgatgatgt tttcactgtt tcttgcaggg ttctgactag gcctactcct
5701 gattttgagt tcacttatct agtgccaccc tctgttgaat ctaagactaa acccttttct
5761 ttacccattc taaccctttc tgagctcaca aattcgaggt tcccggtccc catcgattcg
5821 cttttcaccg cccaaaataa tgtgttgcag gtgcagtgtc aaaatggcag gtgcacactt
5881 gacggtgagc tacaaggcac aacccagttg ctcccatctg gcatctgtgc gttcagggga
5941 cgggtgacag cagaaactga caatcctgac aagtggcaca tgcaactgca aaaccttaat
6001 ggcacaacat atgacccaac tgatgatgtg ccagccccac tgggtacacc tgacttcaag
6061 ggcgtcgtgt ttgggatggc aagccaaaga aatgtgggta acgacgcgcc cggctcaacc
6121 aggtcccatg aggcggtgat ttcaacctac agccccagat ttgttcctaa attaggctct
6181 gtcaatttta aaagcaatga cgatgatttc caattgcagc caacgagatt cacaccagtg
6241 ggcattaatg atgatggcaa ccaaccattc agacaatggg aattaccaga ttattcagga
6301 gtgcttacct tgaatatgaa ccttgccccc cctgttgctc caaatttccc tggcgaacaa
6361 ttactattct tcagatcttc cgtgccatgt tcaggaggtt acaaccaagg tattatagat
6421 tgccttatcc cccaagaatg gatccaacac ttctaccagg aatcagcacc ttctcagtca
6481 gaagtggccc taatcaggta cgttaacccc gacacgggcc gtacactgtt tgaggcaaaa
6541 ttgcataggt caggctatat cactgtggct cattctggag actatcctct tgttgttccg
6601 gctaatggat actttagatt tgactcttgg gtaaatcagt tttactcact cgccccaatg
6661 ggaactggga atgggcgaag gagggctcag taatggctgg agctttcatt gcaggattgg
6721 cgggtgacat gctcacgtca tccgtgggct ccctggtgaa cgcaggggca aacgccatca
6781 accaaaagat agactttgaa aacaacaaac aactccagtc tgcttccttt caacatgata
6841 aagagatgct ccaagcgcag gtgaacgcaa ccaagcagct gcaatctgag atgatagccc
6901 taaaacaggg ggttttggcc gcaggcggct tttcccccac tgatgcagcg aggggggcca
6961 tcggtgcacc catgacaaag gtgcttgact ggtctggcac ccgatactgg gctcccaatt
7021 ccacaaagac aactggttat tcggggcaat tcacctcttc acctgtgcac atgcccagcc
7081 cgagtgtccc acaatcaaaa cccgcaaagc ccaagtctct aggttcttct tcttcttcta
7141 gtagtgttta cagtatgtct acccaattaa cttctctaac atctggctct tctagtaatg
7201 cttcttctgc ttctacaaaa ttgacaaatt tgagctcccg ctcttctcaa aacagaacag
7261 cagagtgggt gaaccaacag agaagtctca gccctttcat gagtggcgca ctcaatatct
7321 cgcatgtcac gccaccttca agtagggcct ccagttctgg gacggtctca accgtgccca
7381 aggaagtttt ggactcctgg acatctgcat tcaacacaca cagacagccg ctcttcgcac
7441 acctcagagt gaggggggag tcacgtgttt agtgaaaaga aataattggc
//