Typing tool
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Typing tool
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Complete norovirus genomes
| LC918509 | GII.17 | |
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| GII.P17 |
ORF1: 1..5103
ORF2: 5084..6706
ORF3: 6706..7485
LOCUS LC918509 7503 bp RNA linear VRL 03-APR-2026
DEFINITION Norovirus GII NoV GII/Hu/JP/2024/GII.17[P17]/IBR2024011 RNA, nearly
complete genome.
ACCESSION LC918509
VERSION LC918509.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Mizukoshi,F., Doan,Y.H., Hirata-Saito,A., Tsukagoshi,H., Motoya,T.,
Kimura,R., Takahashi,T., Hayashi,Y., Matsushima,Y., Miyakawa,K.,
Sakon,N., Sadamasu,K., Yoshimura,K., Saruki,N., Suzuki,Y., Uema,T.,
Murakami,K., Katayama,K., Ryo,A., Kageyama,T. and Kimura,H.
TITLE Phylogenetic Analyses of RdRp Region and VP1 Gene in Human
Norovirus Genotype GII.17[P17] Variants
JOURNAL Microorganisms 14 (4), 770 (2026)
REMARK DOI:10.3390/microorganisms14040770
REFERENCE 2 (bases 1 to 7503)
AUTHORS Doan,Y.H., Mizukoshi,F., Kageyama,T. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2026) Contact:Yen Hai Doan Japan Institute for
Health Security, National Institute of Infectious Diseases,
Department of Diagnostic Testing and Technology Research; 4-7-1
Gakuen, Musashimurayama, Tokyo 208-0011, Japan
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 25
Genome Coverage :: 160x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7503
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NoV GII/Hu/JP/2024/GII.17[P17]/IBR2024011"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2024"
gene <1..5103
/gene="POL"
CDS <1..5103
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BHR06871.1"
/translation="MASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSK
QPPPGETKQIQKPPRPPTPELVKRIPPTPPNGEDEPGIVYKVGEGVSGLPDLTTVVQP
DAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
SLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLND
SWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG
KLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
TKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
LAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
KAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR
ASGLLHERTDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT
LDGLKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHL
RSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGG
CPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
PSLFITSTHVIPKGITEAFGVPTNQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPG
DCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPIL
GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY
WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD
LSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLEAALEVMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGSLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG
PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5084..6706
/gene="VP1"
CDS 5084..6706
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BHR06872.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPNGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6706..7485
/gene="VP2"
CDS 6706..7485
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BHR06873.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLASGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNVSHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 atggcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa cgacaaggaa
61 aaatcttcaa gtgacagctt gtttgctaac atgtctgtca cttttaagaa agccctcggg
121 gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc accaaggcca
181 ccgacaccgg aattggtgaa gagaatacct ccaaccccac ccaatggcga ggatgaacca
241 gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac aactgtggta
301 caacctgacg cacaaaacac agcttatagt gttcccccac ttagccagag agaagtcggc
361 gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga gatctaccac
421 tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc tgctgcaata
481 agccttgcca aaattgagat aacaccgctg tctctctact ggagagtggt ctacactccc
541 cagtatttga tagatccagg aactcttaag aacttgagtg gagagacttt cccatacacg
601 gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa cgactcctgg
661 cttagcagga gaatgatcca aagaacaact ggattcttca aaccttatca ggattggaac
721 agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa tgctgtccta
781 tgcgctctct cctcactttt cactagaccc attaaggaca tcattggaaa gcttagacca
841 ctgaacattc ttaatatact ggcaacctgc gattggactt ttgcaggcat agtggaatcc
901 ttaatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt gtctgcgatg
961 attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc cgtggaactt
1021 gtgcccgtgg tgatgggagg aataggtttg gtgttaggat tcaccaaaga aaagatcggc
1081 aagatgcttt catcagctgc gaccacactt agggcctgca aggacctagg atcttatgga
1141 ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga ggctaacgaa
1201 ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat agaaaacaat
1261 cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag gactcttgac
1321 ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga catcgtgggt
1381 acaataaacg cattgttggc taggatagca gccgccaggt cactggtcca caaggctaag
1441 gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag accaggtata
1501 ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact gtcaggcgac
1561 caaaggattg gactggtacc taggaatggc gtcgaccatt gggacgccta caagggagaa
1621 agggtggtcc tgtgggatga ttatggtatg agcaacccta tacaggacgc actgaggctc
1681 caagaattgg ctgacacctg tcctctgacc ctaaattgtg ataggattga aaacaaagga
1741 aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc agcaccacta
1801 gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta tgcagacgca
1861 cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg gaaagaccat
1921 ttcagaccag acttctcaca cattaaactt cagctggcac cacagggagg ttttgacaaa
1981 aatggcaata ccccacatgg caaaggtgtg gtaaagtccc tgacgattgg ttctctgatc
2041 gccagggcct ccggcttgct ccacgagaga acggatgaat tcgagctcca aggttctgac
2101 ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt agcagctgaa
2161 aacaaatatg gtcttatgga cacattgagg gtcggcaatc aactgaaaag tgttaagacc
2221 ctggatgggc tgaagcaggc cataaagaac atcagtatca agaagtgtca gatagtgtat
2281 aatggatgca cctataccat ggaatctgat gggaggggca aggttgtggt tgaaaaggta
2341 caaaacgcaa cagttcaaac caacaatgaa cttgtagggg cgctccacca cctgagatct
2401 gcaaggataa gatattatgt taaatgtttc caagaagcca tttactctct actccaaatt
2461 gctggtgcag cctttgtcac ctcacgcatc gtgaggcgca tgaacatatc aaacctctgg
2521 tcgaaaccac ccatcgagga gggtgatgag cctgaagaca gaggaggatg ccccaagccc
2581 agggatgaag atgacctcac tattgactct agagacatta aagtggaagg gaagaagggc
2641 aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg cctcagtgat
2701 gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata ctcaatagag
2761 gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa ggccactgag
2821 gaggacttct gtgaggagga ggagatcaaa atccgccaga gaatcttccg acccaccagg
2881 aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga aatcagaaag
2941 aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa caggagcgtg
3001 gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag gatagtcaac
3061 tttggcacag gctgggggtt ctgggtttct ccaagcctct ttataacttc aacacacgtc
3121 ataccaaaag gaatcactga ggcctttgga gtgcccacaa accaaatcca aattcacaaa
3181 tctggagaat tttgccgctt gcggtttcca aagccaatta gaccagacgt gagtgggatg
3241 atcttggaag agggcgcccc tgaaggcact gttgtgtcta ttctcatcaa aaggacaaca
3301 ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa aatccaaggt
3361 agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa aggcatggat
3421 ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaaaagggg caatgacctt
3481 gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat atgtgccaca
3541 cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac ctattgtgga
3601 gcccccattt tgggacctgg caatgcacca aaattgagca caaagacaaa attctggaga
3661 tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg tgggagagac
3721 ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact taaacctttt
3781 acagagccca gggggaagcc accaaaccca aatgtcttag agtcagcaaa gaagactatc
3841 atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc ccaagcttgt
3901 gcatccctcg ataagacaac ctccagtgga tacccgcacc acgtccggaa gaatgactat
3961 tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc aaatctcatg
4021 tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga cgagctcgtg
4081 aaaactgaca aaatttatgg caaaatcaag aaaagactcc tgtggggttc tgacctctcc
4141 acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa agcaaattgt
4201 attacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat aatatttgag
4261 aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga ctccacacaa
4321 cagcgggcag tgctggaagc ggcacttgaa gtcatggtga gattttctgc tgagccacag
4381 ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt gggcgatttc
4441 aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca atggaattct
4501 attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt aggtcctgac
4561 atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt gagcacagac
4621 ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct taaacccact
4681 cggcccgaca aaactgaggg gtcgttggtg attagtgagg acctgaatgg gttgactttc
4741 ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga ccaaaactcc
4801 atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag tgagaccatg
4861 ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc ctccctacat
4921 ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa agagggagga
4981 atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt ctcagatcta
5041 agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgaa
5101 tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca acaacgagac
5161 ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg gccaaaataa
5221 tataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag agttcacagt
5281 gtcacccaga aactctcctg gagaaatttt attaaattta gagttgggcc ctgatttgaa
5341 cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag tggaagttca
5401 ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg ccgtcccgcc
5461 aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac atttaatagt
5521 agatgttagg actcttgaac caattatgat cccactccct gatgttagga atacattctt
5581 ccattatagt aaccagccca acagccgcat gagattagtg gctatgctct ataccccact
5641 cagatctaat ggctcaggtg atgatgtctt tactgtttct tgcagggttt tgactaggcc
5701 tactcccgat tttgagttca cttatttagt gccaccttct gttgaatcta aaactaagcc
5761 tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggtttc cagtccccat
5821 cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa atggcaggtg
5881 tacacttgat ggtgagttac aaggcacaac ccagttgctc ccaaacggca tctgtgcatt
5941 cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc aactgcaaaa
6001 cctcaatggc acaacatatg acccaactga tgatgtgcca gccccgctgg gtacacctga
6061 cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg atgcgcctgg
6121 ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg tccccaaatt
6181 aggttctgtc aatcttagaa ttagtaataa tgatgatttc caattccagc cgacaaaatt
6241 cacaccagtg ggcgtcaatg atgacgatga tgaccacccg ttcagacagt gggaactacc
6301 aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg ctccaaattt
6361 tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag gttacaacca
6421 aggtattata gattgtctta ttccccaaga atggatccaa catttctatc aggaatcagc
6481 accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg gacgtacact
6541 gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg gagactatcc
6601 tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc agttttactc
6661 actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc tggggctttc
6721 attgcaggat tggcaggtga catgctcacg tcatctgtgg gctcccttgt gaacgcaggg
6781 gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca gtctgcttcc
6841 tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca gctgcaatct
6901 gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc cactgatgca
6961 gcaaggggat ccattggtgc acccatgaca aaggtgcttg actggtctgg cactcgatac
7021 tgggcgccca attccacaaa gacaactggc tattcgggac aatttacctc ttcacctgtg
7081 catatgtcta gcccaaatgc tccacaatca aaacctgcaa agcctaggtc tctagctcct
7141 tcctcttctt ctagcagtgt ctatagtatg tatactcaat ctactcattt ggcatctggc
7201 tcttctagta atgcttcttc tgcctccaca aaattgacaa atttaagctc tggctcctct
7261 caaaacagaa cagcagagtg ggtaaatcaa cagagaagtc ttagcccttt catgagtggc
7321 gcacttaacg tctcacatgt cacgccaccc tcaagtaggg cttccagttc tgggacggtc
7381 tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac acacagacag
7441 ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa agaaataatt
7501 ggc
//