Typing tool
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Typing tool
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Complete norovirus genomes
| LC918508 | GII.17 | |
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| GII.P17 |
ORF1: 1..5089
ORF2: 5070..6686
ORF3: 6686..7465
LOCUS LC918508 7561 bp RNA linear VRL 03-APR-2026
DEFINITION Norovirus GII NoV GII/Hu/JP/2025/GII.17[P17]/GNM2025002 RNA, nearly
complete genome.
ACCESSION LC918508
VERSION LC918508.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Mizukoshi,F., Doan,Y.H., Hirata-Saito,A., Tsukagoshi,H., Motoya,T.,
Kimura,R., Takahashi,T., Hayashi,Y., Matsushima,Y., Miyakawa,K.,
Sakon,N., Sadamasu,K., Yoshimura,K., Saruki,N., Suzuki,Y., Uema,T.,
Murakami,K., Katayama,K., Ryo,A., Kageyama,T. and Kimura,H.
TITLE Phylogenetic Analyses of RdRp Region and VP1 Gene in Human
Norovirus Genotype GII.17[P17] Variants
JOURNAL Microorganisms 14 (4), 770 (2026)
REMARK DOI:10.3390/microorganisms14040770
REFERENCE 2 (bases 1 to 7561)
AUTHORS Doan,Y.H., Mizukoshi,F., Kageyama,T. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2026) Contact:Yen Hai Doan Japan Institute for
Health Security, National Institute of Infectious Diseases,
Department of Diagnostic Testing and Technology Research; 4-7-1
Gakuen, Musashimurayama, Tokyo 208-0011, Japan
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 25
Genome Coverage :: 867x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7561
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NoV GII/Hu/JP/2025/GII.17[P17]/GNM2025002"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="2025"
gene <1..5089
/gene="POL"
CDS <1..5089
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BHR06868.1"
/translation="ASVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPPG
ETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNT
AYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKI
ELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSR
RMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPL
NIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEE
ANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSAS
PDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKV
ASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRD
FPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLL
HERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELK
QAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARI
RYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKPR
DEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSE
IRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFI
TSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVS
ILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNA
PKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGES
FTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMI
RCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQ
RAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGL
KPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHED
PSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5070..6686
/gene="VP1"
CDS 5070..6686
/gene="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="BHR06869.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPFGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6686..7465
/gene="VP2"
CDS 6686..7465
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BHR06870.1"
/translation="MAGAFIAGLAGDILTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSAPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRRLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 cgcttccgtt gccgttgctg gcaaaaacaa caacaacgac aatgtaaaat cttcaagtga
61 cagcttgttt tctaacatga ctgttacttt taagaaagcc ctcggggcgc ggtctaagca
121 gccgcccccg ggagaaacaa aacaaacact aagaccacca aggccgccga caccggaatt
181 ggtgaagaag atacccccac ccccccccaa tggcgaggat gaaccaaagg taacgtataa
241 ggtgggagaa ggtgtgtctg ggctgcccga cttaacaacc gtggcacaac ctgacgcaca
301 gaacacagcc tatagtgtcc ccccacttag ccagagagag gtcggcgaag ctagagaacc
361 gttgcctggc tccattctgg aaatgtggga tggtgagatc taccactatg ggctgtatgt
421 tgagcggggg cttgtgctgg gagtgcacaa accacctgct gcaataagcc ttgccaaaat
481 tgagttaaca ccgctgtctc tctactggag agtggtctac actccccagt acttgatagc
541 tccagagacc ctcaagaatt taaatggaga gactttccca tacacggcct ttgacaacaa
601 ctgttatgcc ttctgttgtt gggttctaga cctcaacgac tcctggctta gcagaagaat
661 ggtccaaaga acaaccggat tcttcagacc gtatcaggac tggaacagaa aacccttacc
721 aaccatggat gaaccaaaaa tcaagaaggc cgcgaatgct gttctgtgtg ctctctcctc
781 actcttcact aggcccatca aagatgtcat tggaaagctt aaaccactaa acattatgaa
841 catactggca acttgtgatt ggacttttgc gggcatagtg gaatccatga tccttcttgc
901 tgaactcttt ggggtgttct ggacgccccc agatgtgtct gcaataattg ctcccttact
961 cggtgactac gagatgcaag gccccgaaga cctggccgtg gaacttgtgc ccgtggtaat
1021 gggaggaata ggtttggtgt taggattcac caaggaaaag atcggcaaga tgctttcatc
1081 agctgcaacc acactcaggg cctgtaagga tctaggatct tatgggttgg agatactcaa
1141 actggtcatg aagtggttct tccccaagaa ggaggaggcc aacgagttag ccatggtgag
1201 ggccattgag gatgcagttc tggatctgga ggcaatagaa aacaaccaca tgaccactct
1261 ccttaaggac aaagacgccc tggccacata catgaggact cttgacttgg aagaagaaaa
1321 agcaaggaaa ctatcttcca aatcggcgtc acctgacatc gtgggcacag taaacgcatt
1381 attggcaaga atagcagccg ccaggtcact ggtccacaag gctaaggagg agctctcgag
1441 cagacagaga cctgttgttg taatgatatc aggtaggcca ggtataggaa agacccatct
1501 ggccagagag ctagccaaga aggttgcgtc aacactgtca ggcgaccaaa ggattggact
1561 gatacccaga aatggcgtcg accattggga cgcctacaaa ggagagcggg tggttctgtg
1621 ggatgactat ggcatgagca accctataca ggacgcactg aggctccaag aattggctga
1681 cacctgtcct ctgaccctaa attgtgacag aattgaaaac aaaggaaaag tgttcgacag
1741 tgacgccata atcataacga ccaaccttgc aaacccagca ccattggatt atgtcaactt
1801 tgaggcttgt tccagacgca tagacttctt ggtgtatgca gacgcacctg acatcgagaa
1861 ggctaagcgt gactttcctg gccaaccaga tatgtggaaa gaccattaca gaccagactt
1921 ctcacacatt aaacttcagc tcgcaccaca gggaggcttt gataagagtg gcaacacccc
1981 acatggcaaa ggcgtggtta agtctctgac gattggctct ctgatcgcca gggcttctgg
2041 cttgctccat gagagaatgg atgaattcga gctccaaggc cccaacttac caaccttcaa
2101 tttcgaccgt aacaaagtcg ccgccttcag acaattggca gctgaaaata aatacggtct
2161 tatggacaca ctgagggtcg gcaaccaact gaaaagtgtc aaaaccctgg atgagctgaa
2221 gcaggccata aagaacatca ccatcaagaa gtgccagata gtgtacaatg gatgcaccta
2281 caccatggaa tctgatggga ggaacaaggt tgtggttgaa aaggttcaaa atgcaacagt
2341 ccaaaccaac aatgaacttg caggagcact ccaccacctg agatctgcaa gaataaggta
2401 ttatgtcaaa tgtttccaag aagctattta ctctatactc caaattgctg gtgcagcctt
2461 cgtcaccacg cgcatcgtga ggcgcatgaa catctcaaac ctctggtcga agccacccgt
2521 cgaagagggt gatgagcctg aagacaaagg ggggtgcccc aagcccaggg atgaagatga
2581 cctcactatt gactccaaag acattaaagc agaaggtaag aagggcaaga acaaatctgg
2641 ccggggcaag aaacacacag ctttctcatc caagggcctc agtgatgaag agtacgatga
2701 gtacaagaga atcagggagg agagaaatgg caagtactca atagaagaat acctccagga
2761 tagggataga tactatgaag agcttgccat tgctaaggcc actgaggaag acttctgtga
2821 agaggaggaa atcaaaattc gccagagaat cttccggccc accaggaagc agcggaaaga
2881 ggaaagagcc acgcttgggc tcgtcacagg atcggaaatc agaaagagga acccagatga
2941 ttttaagcca aaaggaaaat tgtgggctga tgacaacagg agtgtggatt acaatgagag
3001 gatagatttt gaggctcccc caagtgtttg gtctaggata gtcaactttg gtacaggatg
3061 gggattctgg gtctccccaa gtctctttat aacttcaaca catgtcatac caaaaggaat
3121 tactgaggcc tttggagttc ccattaacca aattcaaatt cacaaatctg gagagttttg
3181 ccgcttgcgg tttccaaaac caatcaggcc agacgtgagt ggaatgattt tggaagaggg
3241 tgcccctgaa ggcactgttg tttccattct catcaagagg acgacagggg aactgatgcc
3301 tctcgcagtc agaatgggaa ctcatgccac aatgaaaatc caaggtagaa cggtgggcgg
3361 tcaaatgggc atgcttctca ctggctcaaa cgccaaaagc atggacctag gcacaacacc
3421 aggtgactgt gggtgcccat acatatacaa aaggggcaat gacttcgtgg tcattggggt
3481 gcacactgct gcagcccgtg gaggtaacac ggtcatatgt gccacacagg ggagtgaagg
3541 cgaagccacc ctcgaaggag gtgacaacaa gggcacctat tgtggagccc ccatcttggg
3601 tcctggcaac gcaccaaaat tgagcacaaa aacaaaattc tggagatctt ctaacgcgcc
3661 gctcccgcca ggcacctacg aaccagcata ccttggtgga aaagacccgc gtgtgaaggg
3721 aggcccatct ctacaacagg ttatgagaga ccaactcaaa ccttttacag agcccagagg
3781 gaagccacca aaaccaagtg tcctagaatc agcaaagaag accatcatta atgttctgga
3841 acaaaccatt gacccccctg aaaagtggtc gtatgcccaa gcttgtgcat ccctcgacaa
3901 gacaacctcc agtggatacc cgcatcacgt ccggaagaat gactactgga gtggtgaatc
3961 cttcacgggg aaacttgcag accaggcctc aaaagcaaat ctcatgtatg aggaaggtaa
4021 gcacatgcaa ccagtttaca ccgcagcact caaagacgag ctcgtgaaaa ctgacaaaat
4081 ttatggcaag atcaagaaaa gactcctgtg gggctctgac ctatccacca tgattcgatg
4141 cgccagggca tttggtggcc tcatggacga gctcaaagca aattgtatca cactccctat
4201 cagagttggc atgaacatga atgaagatgg tcccataata tttgaaaagc actccaggta
4261 caggtatcac tatgatgctg attattcccg ctgggattcc acacaacagc gggcagtgct
4321 ggaagcggca cttgaaatca tggtgagatt ttctgctgag ccacagttgg cacaaatagt
4381 ggcagaggac ctgctatcac caagtgtggt tgatgtgggc gatttcaaaa ttactattaa
4441 tgaaggccta ccatctggcg tgccttgcac ttcacaatgg aattctattg ctcactggtt
4501 actcacccta tgtgcactgt ctgaagtgac aggactaggc cctgacatca tacaagccaa
4561 ctccatgtac tctttctatg gtgatgatga gattgtgagc acagacataa aattagaccc
4621 agagaaattg actgcaaaac tcaaagaata tggtcttaaa cccacccggc ctgacaagac
4681 tgaggggcca ctggcaatta gtgaggacct gaatgggttg actttcctcc gccgaacagt
4741 cacccgcgat ccagcgggtt ggtttggaaa gttggaccaa aactccatcc tcagacagct
4801 gtactggaca aggggaccca accatgaaga ccccagtgag actatgatac cacacgcaca
4861 gagacctgtg cagctcatgg cattgctagg agaatcctcc ctacatggac cctcatttta
4921 cagcaaggtt agcaaactgg ttatatctga acttaaagag ggaggaatgg atttttatgt
4981 gcccagacaa gagtcaatgt tcaggtggat gaggttctca gatctaagca catgggaggg
5041 cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgaatgac gccgctccat
5101 ctaatgatgg tgctgctggt ctcgtaccag agggcaataa cgagaccctt cccctagaac
5161 cagttgcggg cgcagccata gccgcacccg tcactggcca aaataatata attgacccct
5221 ggattagaac aaattttgtg caagcaccaa atggagagtt cacagtgtca cccagaaact
5281 ctcctggaga aattttacta aacctagagt tgggccctga tctgaaccct tatttggctc
5341 atttgtcaag gatgtataat ggatatgctg gtggagttga agtccaggtt ctcctggcag
5401 ggaacgcgtt cactgccggg aagatcctct tcgccgctgt cccgccaaat tttccggtgg
5461 aattcttaag cccagcccag attacaatgc tcccacatat aatagtagat gttaggactc
5521 ttgaaccaat tatgatccca ttacctgatg ttaggaatac attcttccac tataataatc
5581 agcccaacag ccgcatgaga ttagtggcta tgctctacac ccctcttaga tctaatggct
5641 caggtgatga tgttttcact gtttcttgca gggttttgac taggcctact cctgattttg
5701 agttcactta tctagtgcca ccctctgttg aatctaagac taaacccttt tctttaccca
5761 ttctaaccct ttctgagctc acaaattcga ggttcccggt ccccatcgat tcgcttttca
5821 ccgcccaaaa taatgtgttg caggtgcagt gtcagaatgg caggtgcaca cttgacggtg
5881 agctacaagg cacaacccag ttgctcccat ttggcatctg tgcgttcagg ggacgggtga
5941 cagcagaaac tgacaatcct gacaagtggc acatgcaact gcaaaacctt aatggcacaa
6001 catatgaccc aactgatgat gtgccagccc cactgggtac acctgacttc aagggcgtcg
6061 tgtttgggat ggcaagccaa agaaatgtgg gcaacgacgc gcccggctca accaggtccc
6121 atgaggcggt gatttcaacc tacagcccca ggtttgttcc taaattaggc tctgtcaatt
6181 tcaaaagcaa tgacgatgat ttccaactgc agccaacaag attcacacca gtgggcatta
6241 atgatgatgg caaccaacca ttcagacaat gggaactacc agattattca ggagtgctta
6301 ccttgaatat gaacctcgcc ccccctgttg ctccaaattt ccctggcgaa caattactat
6361 tcttcagatc ttctgtgcca tgttcaggag gttacaacca aggtattata gattgcctta
6421 tcccccaaga atggatccaa cacttctacc aggaatcagc accttctcag tcagaagtgg
6481 ccctaatcag gtacgtcaac cccgacacgg gtcgtacact gtttgaggca aaattgcata
6541 ggtcaggcta tatcactgtg gctcattctg gagactatcc tcttgttgtt ccggctaatg
6601 gatactttag atttgactct tgggtaaatc agttttactc actcgcccca atgggaactg
6661 ggaatgggcg aaggagggct cagtaatggc tggagctttc attgcaggat tggcgggtga
6721 catactcacg tcatccgtgg gctccctggt gaacgcaggg gcaaacgcca tcaatcaaaa
6781 gatagacttt gaaaacaaca aacaactcca gtctgcttcc tttcaacatg ataaagagat
6841 gctccaagcg caggtgaacg caaccaagca gctgcaatct gagatgatag ccctaaaaca
6901 gggggttttg gccgcaggcg gcttttcccc cactgatgca gcgagggggg ccatcggtgc
6961 acccatgaca aaggtgcttg actggtctgg cactcgatac tgggctccca attccacaaa
7021 gacaactggt tattcggggc aattcacctc ttcacctgtg cacatgccca gcccgagtgc
7081 cccacaatca aaacccgcaa agcccaagtc tctaggttct tcttcttctt ctagtagtgt
7141 ttatagtatg tccacccaat taacttctct aacatctggc tcttctagta atgcttcttc
7201 tgcttctaca aaattgacaa atttgagctc cggctcttct caaaacagaa cagcagagtg
7261 ggtgaaccaa cagagaaggc tcagcccttt catgagtggc gcgctcaata tctcgcatgt
7321 cacgccacct tcaagtaggg cctccagttc tgggacggtc tcaaccgtgc ccaaggaagt
7381 tttggactcc tggacatctg cattcaacac acgcagacag ccgctcttcg cacacctcag
7441 agtgaggggg gagtcacgtg tttagtgaaa agaaataatt ggctataata tgatttcttc
7501 aaaagttaaa tttggctaat ttgtatcttt taaaaaaaaa aaaaaaaaaa aaaaaaaaaa
7561 a
//