Typing tool
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Typing tool
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Complete norovirus genomes
| LC877034 | GII.7 | |
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| GII.P7 |
ORF1: 1..5077
ORF2: 5058..6680
ORF3: 6680..7453
LOCUS LC877034 7474 bp RNA linear VRL 31-MAY-2025
DEFINITION Norovirus GII.7 Hu/GII.7[P7]/TKY2931/2025/JPN RNA, nearly complete
genome.
ACCESSION LC877034
VERSION LC877034.1
KEYWORDS .
SOURCE Norovirus GII.7
ORGANISM Norovirus GII.7
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7474)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2025) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 24
Genome Coverage :: 50.58x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7474
/organism="Norovirus GII.7"
/mol_type="genomic RNA"
/isolate="Hu/GII.7[P7]/TKY2931/2025/JPN"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:490042"
/geo_loc_name="Japan"
/collection_date="2025-03"
/note="genotype: GII.7"
CDS <1..5077
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BGF32865.1"
/translation="DATAALGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKKMLGAVP
KGAKAPSSSQSCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQNEHE
NTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAISLA
TIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWL
NRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLK
PLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPEDLA
VELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKK
EEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKS
SSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAK
SIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCPV
TLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVK
RDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAG
LVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKSVKTLED
LKAALRDVKFNECEIIYRSSRYRVSSNGKGSVSVDKIADNASQTVNEVHSALLRLRQA
RARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETHEVNEPEKETAQGR
WEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYL
QDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGSDIRKR
RPDDFQPKGNLWADDTRSVDYNEKLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTH
VLPKGIKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSVLVK
RPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYK
RGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPKLS
TKTKFWRSSPDALPPGAYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPPRPA
VLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGP
LADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCAR
AFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSIL
SAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAH
WILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTR
PDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYES
MVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRF
SDLSTWEGDRNLAPEGVNEDGVE"
CDS 5058..6680
/note="ORF2"
/codon_start=1
/product="VP1 protein"
/protein_id="BGF32866.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDNSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
CDS 6680..7453
/note="ORF3"
/codon_start=1
/product="VP2 protein"
/protein_id="BGF32867.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPMQSASYVNNQNRQLFKVDPSPSSSSGSSVSSVKTQ
STALSGTSRVDSSSQSTLSTRPSSRTSDWVRSQNERLSPFMNGALQTAYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 cgacgctacc gctgcccttg gcagtcaaaa ctctgtcaat gacagtaaca acgccacccc
61 ttctaacaaa gaagaggttg gtgcattctc caacattaaa gttggattta agaaaatgct
121 gggcgccgta cccaaaggtg ccaaagcgcc cagcagcagt caaagttgcc ccacagttaa
181 gatcgggcct aaaacgctaa caatcccccc tgagccccca aacggtgagg atacagtaca
241 atttgatgca aagtcagaaa ctataattgg gctaccagac ttgacaacgg tgcaaaacga
301 acacgaaaac accccatata ctgtccctcc actaagtgag agggagcaca gaccggccac
361 tgaaccgctt cctggcacaa tattggagat gtgggatggt gagttctacc attactccgt
421 gtacgtcagc gatggcaaag ctctgggagt ccacaaacca ccggcggcca taagcctcgc
481 gacgatagag ctcaccccca tatcactcta ctggaggccc gtttacactc ccaactactt
541 agtctctcca gacacattaa agggcctcgc tggtgagaag ttcccctaca cggcctttag
601 taataactgt tacaatttct gttgttgggt gcttgagctc aatgacacgt ggcttaacag
661 aagatgcatt tctagaacta ccggcttctt caaaccatac cagtcttgga atagaaaacc
721 tctcccaact gttgatgatg gaaagatcaa aaaggtggcc aatgcgatcc tctgtgcact
781 cggttcgctg ttttcaaaac caattaaaga cctactgggt aaactcaagc cattgaatct
841 gctacacttg ctcgcgtcct gtgattggac gtttgcaggc atagtggaga cagtcatctt
901 aatggcggaa cttttcaatg tgttctggac cccaccagat gtctccaatt ttatagcttc
961 cctgataggt gattttgaat tacaagggcc tgaagacctg gctgtagagc tcgtccccgt
1021 ggtcatgggt ggcataggga tggttctcgg cttcactgct gagaagattg gccgcatgct
1081 gtcgtccgct gcatcaacac tgcgggcatg caaagaccta gggaactacg cccttgacat
1141 actcaaattg gtcatgaaat ggttcttccc gaagaaggaa gagaaggctg agatggaaac
1201 cctgagggcg attgaagacg ccgtccttga tatggaagct atagggaata accatctcac
1261 gaccctcctc aaggacaaag acagcctcac agctttcatg aagaccttag atctagaaga
1321 ggagaaggcg aggaagctgt ccaccaaatc atcctcaccg gacatagtcg gcaccatcaa
1381 cgccatatta gctaggatag ctgccgccag atcccttcta cataaggcca aagaagagat
1441 gttcagtagg atcagaccag tggtcgtcat gatctcaggc agacctggca ttggaaagac
1501 ccacatggct agacacttgg ctaagagcat cgccaatacc atgagtggtg atcagagagt
1561 cggacttgtc ccacgcaacg gtgtcgatca ttgggacgcc tacagagggg agagggtggt
1621 cttgtgggat gactacggta tggggagtcc tgtcaaagac gccctgacac tgcaagagtt
1681 ggccgacaca tgtccagtca ctttaaattg tgacaggatt gagaataagg gaaagatgtt
1741 tgatagtgat gtcatcataa tcacgaccaa cttagtcaac cctgcacccc tcgactatgt
1801 gaacttcgag gcgtgttcta ggagagttga cttcctggtc tatgcagagt caccagaaat
1861 tgaaaaggtc aagagagact tccctggcca gcctgacatg tggaaggacc attttaaacc
1921 agacttttcc catatcaagt tgactctagc cccccagggt gggtttgaca aaaatggcaa
1981 caccccacac ggcaagggca ccatgcggtc cttaactcag gggtccctaa ctgcgagagt
2041 cgcaggcctt gtccatgaga ggagggacga gttccaactc caaggaaatg acctccagac
2101 atacaacttt gacaccaata gagtctccgc attcagaaaa ctggccgcag acaacaagta
2161 tggcatcatg gagacgatga gagttggtgc agcgctcaag agtgtgaaga ccttggaaga
2221 tctcaaagct gcattgaggg atgtaaaatt taatgagtgt gaaataattt acaggagctc
2281 taggtaccga gtctcttcca acggcaaagg ctcggtctct gttgacaaaa ttgcagacaa
2341 tgcttcccag actgtgaacg aggtgcattc agcacttctt agactcaggc aagcaagggc
2401 caggtattac atcagctgct tccaagacct cgtttacact ctcatacagg ttgccggggc
2461 atcgttcgtc gtcagtagaa tctccagaag gttctgctgg gaaaggtggg taaaaccgac
2521 cgagacccat gaagtgaatg agcccgaaaa ggaaacagcc cagggtagat gggagattga
2581 gcccaaggac acagaaccag aaggcaagaa gggcaagaac aagaaaggaa ggggcaagaa
2641 acacacagct ttttctagca aaggcctgag tgatgaagag tatgatgagt tcaagagaat
2701 cagggaagaa agaaacggaa agtactccat tgaggagtac ctgcaggacc gagaccgtta
2761 ttatgaagag gtggcggttg ctcgggcgac agaggaggac ttctgtgaag aagaagaagc
2821 caagataaga cagagaattt tccgcccgac taggaaacag aggaaggagg aaaggggcgt
2881 gcttggcttg gtcactggct cagacatcag aaagaggaga cccgacgact tccaaccaaa
2941 gggcaatcta tgggcagatg acaccagaag tgtagactac aatgagaagc ttgattttga
3001 agcacctcca agtgtttggt caagaatagt cccattgggc actggttggg ggttttgggt
3061 ttcatccaac cttctgatca caacaacaca cgtcctgccc aaagggatca aggaactctt
3121 tggagttgag atcaaacaaa tccaagttca taagtctgga gagttttgca ggtttaggtt
3181 tccaagaccc atcaggccag atgtcacagg actcgtactg gaggaaggcg ccccagaggg
3241 tactgtctgt tctgtactcg taaaaagacc cacaggtgaa atgatccccc ttgcagtgag
3301 gatgggtacg catgcatcca tgaaaataca gggcagaaca gttggtggcc agatggggat
3361 gctcctcacg ggagcaaacg cgaagaacat ggatctcggc actggtcctg gtgactgcgg
3421 ttgcccctac atctacaaac gtggcaatga tatagttgtc gcgggtgttc acactgcagc
3481 agcccgtggg ggcaacactg tcatatgtgc cacccaaggg caagatgggg aagcggtcct
3541 tgagggaaat gaggatcttg gcacttactg tggtgcccca attctgggtc ctggcaaggc
3601 gcccaaactc agcacgaaga ccaaattctg gcgctcatca ccagacgcct tgccacctgg
3661 tgcatacgaa cctgcttacc taggtggcaa agaccctaga gtggaaaaag gtccctccct
3721 gcaacaagtt atgagagacc agttgagacc cttcacagag cccaggggca aaccacccag
3781 acctgcagtc ttagaggaag ccaaaaagac agtgatgaat gttttagaac aaaccattga
3841 ccctgccaag ccatggtcct actcccaggc atgtgcctca cttgacaaaa ccacttctag
3901 tggtagtccc catcatgtca agaaaaatga ccactggaat ggggagtctt tcactggtcc
3961 acttgcagat caggcatcta aagctaatct catgtatgaa caggccaaac atgtgcagcc
4021 cgtgtacacg gcagcgctta aagatgagct tgttaagact gacaagatct acaagaaaat
4081 aaagaagagg ctcctatggg ggtcggacct tggcacaatg atcaggtgcg ccagggcttt
4141 tggcggtctt atggacagca tgaaggcaag ttgtatagct cttccttgca gggtagggat
4201 gaacatgaat gaagatggcc ccatcatatt tgacaaacac tccaagtaca ggtaccacta
4261 tgatgctgac tattctaggt gggactcaac ccaacagagg agcattctct ctgccgctat
4321 ggaagtaatg gtgcggtttt ctgccgaacc agaactggca caagtggttg cagaggatct
4381 tttggctcct agccagcttg acgttggtga ctttgtcatc tcagtccagg aaggtctacc
4441 atcaggagtc ccatgcacat cacaatggaa ttcaatagca cactggatcc tgactttgag
4501 tgcaatggca gaagtatcag gtctctcacc agatgtagtt caagctcact cctgtttttc
4561 attttacggg gacgatgaga tcgtcagtac tgacatcaat ctcgacccta tgaagttgac
4621 acagaaactc agggagtatg gtctggtccc cacccgacct gataaaactg aaggccccct
4681 cgtcataact gaagacctca ccggcctgac attcctccgt aggtcgattg ctcgggaccc
4741 agctggttgg tttgggaaac tagaccagga ctcaattctc agacagctat actggacaag
4801 ggggcctaac catgagaacc cgtacgagag tatggttcct cattctcagc gggctacaca
4861 gctcatggcc cttcttggtg aggcctcgct gcatggtcca cagttttaca agaaagttag
4921 caagatggtc atcaatgaga ttaagagtgg tggtctggag ttttatgtgc ccagacaaga
4981 ggccatgttc aggtggatga gattctctga cctcagcaca tgggagggcg atcgcaatct
5041 tgctcccgaa ggtgtgaatg aagatggcgt cgaatgacgc agctccatct aatgatggtg
5101 cagcaggcct cgtgccagag atcaacaatg aggtcatgcc ccttgagccc gtggctggtg
5161 catcgctggc gacaccagtt gtcgggcaac aaaatataat tgatccctgg ataagaaata
5221 attttgtaca agctcctgca ggtgagttta cagtttcccc tagaaattcc cctggtgaaa
5281 ttttgcttga tttggagttg ggaccagagt tgaaccccta tctcgctcat cttgcccgca
5341 tgtacaatgg gcacgctggt ggtatggaag tgcaaattgt gttggctggg aacgcgttca
5401 cagctggcaa gatcatattt gctgccatcc ctccagggtt cccatatgaa aatttgtcac
5461 cttcacaaat tacaatgtgc ccccatgtaa taattgatgt tagacaatta gagccagtct
5521 tattacctat gccagatatc agaaataatt tctttcatta caatcagggt aatgatccaa
5581 aattaagact ggtagctatg ctctatactc ctttaagggc taataattct ggtgatgatg
5641 tgttcacagt ttcttgtagg gttctcacta aaccatcacc tgattttgaa ttcacatttt
5701 tggtcccccc tacagttgaa tccaagacca agcaattcac attgcccatc cttaaaatat
5761 cagagatgac caactcaaga ttcccagtgc cggtggaaat gatgtacaca gcaaggaatg
5821 agaatcaagt tgtccagcca cagaatggta gggtcacact cgatggcgag ctattgggca
5881 ccacgccctt gctggctgtc aacatctgca aattcaaggg agaagtcata gctaagaatg
5941 gagatgtgag atcctatagg atggacatgg aaatcaccaa cactgatggc accccaattg
6001 accccactga agatacacct ggtcccattg gatcacctga ctttcaaggt atactctttg
6061 gcgttgccag tcagcgcaac aaaaatgaac agaatcctgc taccagagcc catgaagcca
6121 acatcaacac tggtggggac cagtatgccc ccaaattggc ccaagtgaaa ttcttctcag
6181 agtcccagga tttcgaggtg caccaaccca cagttttcac cccagttggt gtggcaggtg
6241 ataattccca ccctttcaga cagtgggtct tgcctcgata tggtggacat ctcaccaaca
6301 acactcacct ggctccagca gtggcccccc tattcccagg tgagcagatt ctgttcttta
6361 gatcacaaat acctagttca ggcggccatg aattgggtta catggactgc cttgtcccac
6421 aggaatgggt ccaacacttt taccaagaag ctgccacagc tcagtctgag gtggcactca
6481 taaggttcat taaccctgac actggcagag tcctctttga ggccaagtta cacaagcaag
6541 gctttataac tgtggctcac accggtgaca acccaattgt catgccacca aatgggtact
6601 tcagatttga agcctgggtc aatcagtttt attcactcgc ccccgtggga actgggaatg
6661 ggcgtaggag gatccaatga tggccagtgc tttctttgca aatttggcag ggggcgtcgc
6721 ctccaatgga atcagttcac tcataaatgc tggggctaat gctattaacc aaaaggttga
6781 gtttgattat aataaacaac tccaaaatgc atccttctcc catgataaag aaatgctcca
6841 agcccaaatt gaagctacta agcgtttgca acaagagatg attgacataa aacaaggggt
6901 gctgacggct gcgggattct ctcccacgga tgccgcgagg ggttctgttg gcgcgccaat
6961 gacaaaatta gttgattgga gtggtaccag atattgggct cctggtgcca tgaggacaac
7021 aggatattct ggaactttta ctcacttgcc tcctatgcag tctgcttcat atgtcaataa
7081 tcagaataga cagcttttta aggtggatcc ttctccttct tcttcaagtg gctcttcagt
7141 ttcttctgtt aaaacacaat caactgctct ctccggcact tcaagggtgg actcttcatc
7201 tcagtcgacc ctgtcgacca ggccgagctc aaggacatct gattgggtac gtagccaaaa
7261 tgaaaggttg agccccttca tgaatggagc gttgcaaaca gcgtatgtaa cgccaccatc
7321 tagtagggca tcaagtgtca gcacagtctc gaccgtgccg aaagaggttt tggactcctg
7381 gacgcctatg tttaacactc acaggcagcc gctcttcgcc cacttgcgta ggcgagggga
7441 gtcacagatt tagtgaaaag atcaattagg gaag
//