Typing tool
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Typing tool
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Complete norovirus genomes
| LC877033 | GII.7 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6701
ORF3: 6701..7474
LOCUS LC877033 7511 bp RNA linear VRL 31-MAY-2025
DEFINITION Norovirus GII.7 Hu/GII.7[P7]/TKY994/2024/JPN RNA, nearly complete
genome.
ACCESSION LC877033
VERSION LC877033.1
KEYWORDS .
SOURCE Norovirus GII.7
ORGANISM Norovirus GII.7
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7511)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2025) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 24
Genome Coverage :: 4132.52x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7511
/organism="Norovirus GII.7"
/mol_type="genomic RNA"
/isolate="Hu/GII.7[P7]/TKY994/2024/JPN"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:490042"
/geo_loc_name="Japan"
/collection_date="2024-09"
/note="genotype: GII.7"
CDS 5..5098
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BGF32862.1"
/translation="MKMASNDATAALGSQNSVNDSNNATPSNKEEVGAFSNIKVGLKK
MLGAVPKGAKAPSSSQNCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKVKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQAYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKS
VKTLEDLKAALRDVKFNECEIIYKSSRYRVSSNGKGSVSVDKIADNASQTVNEVHSAL
LRLRQARARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETHEANEPEK
ETAQGGWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNEKLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGIKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSVLVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5079..6701
/note="ORF2"
/codon_start=1
/product="VP1 protein"
/protein_id="BGF32863.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDNSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
CDS 6701..7474
/note="ORF3"
/codon_start=1
/product="VP2 protein"
/protein_id="BGF32864.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTYLPPMQSASYVNNQNRQLFKVDSSPSSLSGSSVSSVKTQ
STALSGTSRVDSSSQSTLSTRPSSRTSDWVRSQNERLSPFMNGALQTAYVTPPSSRAP
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgctgccctt ggcagtcaaa actctgtcaa
61 tgacagtaac aacgccaccc cttctaacaa agaagaggtt ggtgcattct ccaacattaa
121 agttggactt aagaaaatgc tgggcgccgt acccaaaggt gccaaagcgc ccagcagcag
181 ccaaaattgc cccacagtta agatcgggcc taaaacgcta acaattcccc ctgagccccc
241 aaacggtgag gatacagtac aatttgatgc aaagtcagaa actataattg ggctaccaga
301 cttgacaacg gtgcaaaacg aacacgaaaa caccccatat actgtccctc cactaagtga
361 gagggagcac agaccggcca ctgaaccgct tcctggcaca atattggaga tgtgggatgg
421 tgagttctac cattactccg tgtacgtcag cgatggcaaa gctctgggag tccacaaacc
481 accggcggcc ataagcctcg cgacaataga gctcaccccc atatcactct actggaggcc
541 cgtttacact cccaactact tagtctctcc agacacatta aagggcctcg ctggtgagaa
601 gttcccctac acggccttca gtaataactg ttacaatttc tgttgttggg tgcttgagct
661 caacgacacg tggcttaaca gaagatgtat ttctagaact accggcttct tcaaaccata
721 ccagtcttgg aatagaaaac ctctcccaac tgttgatgat ggaaaggtca aaaaggtggc
781 caatgcgatc ctctgtgcac tcggttcgct gttttcaaaa ccaattaaag acctactagg
841 taaactcaag ccattgaatc tgctacactt gctcgcgtcc tgtgattgga cgtttgcagg
901 catagtggag acagtcatct taatggcgga acttttcaat gtgttctgga ccccaccgga
961 tgtctccaat tttatagctt ccctgatagg tgattttgaa ttgcaagggc ctgaagacct
1021 ggctgtagag ctcgtccccg tggtcatggg tggcataggg atggttctcg gcttcactgc
1081 tgagaagatt ggccgcatgc tgtcgtccgc tgcatcaaca ctgcgggcat gcaaagacct
1141 agggaactac gcccttgaca tactcaaatt ggtcatgaaa tggttcttcc cgaagaagga
1201 agagaaggct gagatggaaa ccctgagggc gattgaagac gccgtccttg atatggaagc
1261 catagggaat aaccatctca cgaccctcct caaggacaaa gacagcctca cagctttcat
1321 gaagacctta gatctagaag aggagaaggc gaggaagctg tccaccaaat catcctcacc
1381 ggacatagtc ggcaccatca acgccatatt agctaggata gctgccgcca gatcccttct
1441 acataaggcc aaagaagaga tgttcagtag gatcagacca gtggtcgtca tgatctcagg
1501 cagacctggc attggaaaga cccacatggc tagacacttg gccaagagca tcgccaatac
1561 catgagtggt gatcagagag tcggactcgt tccacgcaac ggtgtcgatc attgggacgc
1621 ctacagagga gagagggtgg tcttgtggga tgactacggt atggggagtc ctgtcaaaga
1681 cgccctgaca ctgcaagagt tggccgacac atgtccagtc actttaaatt gtgacaggat
1741 tgagaataag ggaaagatgt ttgatagtga tgtcatcata atcacgacca acttagtcaa
1801 ccctgcaccc ctcgactatg tgaacttcga ggcgtgttct aggagagttg acttcctggt
1861 ctatgcagag tcaccagaaa ttgaaaaggt caagagagac ttccctggcc agcctgacat
1921 gtggaaggac cattttaaac cagacttttc ccatatcaag ttgaccctag ccccccaggg
1981 tgggtttgac aaaaatggca acaccccaca cggcaagggc accatgcggt ccttaactca
2041 ggggtcccta actgcgagag tcgcaggcct tgtccatgag aggagggacg agttccaact
2101 ccaaggaaat gacctccagg catacaactt tgacaccaat agagtctccg cattcagaaa
2161 actggccgca gataacaagt atggcatcat ggagacgatg agagttggtg cagcgctcaa
2221 gagtgtgaag accttggaag atctcaaagc tgcattgagg gatgtgaaat ttaatgagtg
2281 tgaaataatt tacaagagct ctaggtaccg agtctcttcc aacggcaaag gctcggtctc
2341 tgttgacaaa attgcagaca atgcttccca gactgtgaac gaggtgcact cagcacttct
2401 tagactcagg caagcaaggg ccaggtatta catcagctgc ttccaagatc tcgtttacac
2461 tctcatacag gttgccgggg catcgttcgt cgtcagtagg atctccagaa ggttctgctg
2521 ggaaaggtgg gtaaaaccga ccgagaccca tgaagcgaat gagcccgaaa aggaaacagc
2581 ccagggtgga tgggagattg agcccaagga cacagaacca gaaggcaaga agggcaagaa
2641 caagaaagga aggggcaaga aacacacagc tttttctagc aaaggcctga gtgatgaaga
2701 gtatgatgag ttcaagagaa tcagggaaga aagaaacgga aagtactcca ttgaggagta
2761 cctgcaggac cgagaccgtt attatgaaga ggtggcggtt gctcgggcga cagaggagga
2821 cttctgtgaa gaggaagaag ccaagataag acagagaatt ttccgcccga ctaggaaaca
2881 gaggaaggag gaaaggggcg tgcttggctt ggtcactggc tcagacatca gaaagaggag
2941 acccgacgac ttccaaccaa agggcaacct atgggcagat gacaccagaa gtgtagacta
3001 caatgagaag cttgattttg aagcaccccc aagtgtttgg tcaagaatag tcccattggg
3061 cactggttgg gggttttggg tttcatccaa ccttctgatc acaacaacac acgtcctgcc
3121 caaagggatc aaggaactct ttggagttga gatcaaacaa atccaagttc ataagtctgg
3181 agagttttgc aggtttaggt ttccaagacc catcaggcca gatgtcacag gactcgtgct
3241 ggaggaaggc gccccagagg gtactgtctg ttctgtactc gtaaaaagac ccacaggtga
3301 aatgatcccc cttgcagtga ggatgggcac gcacgcatcc atgaaaatac agggcagaac
3361 agttggtggc cagatgggga tgctcctcac gggagcaaac gcgaagaaca tggatctcgg
3421 cactggtcct ggtgactgcg gttgccccta catctacaaa cgtggcaacg atatagttgt
3481 cgcgggtgtt cacactgcag cagcccgtgg gggcaacact gtcatatgtg ccacccaagg
3541 gcaagatggg gaagcggtcc ttgagggaaa tgaggacctt ggcacctact gtggtgcccc
3601 aattctgggt cctggcaagg cgcccaaact cagcacgaag accaaattct ggcgctcatc
3661 accagacgcc ttgccacctg gtacatacga acctgcttac ctaggtggca aagaccctag
3721 agtggaaaaa ggtccctccc tgcaacaagt tatgagagac cagttgagac cattcacaga
3781 gcccaggggc aaaccaccca gacctgcagt cctagaggaa gccaaaaaga cagtgatgaa
3841 tgttttagaa caaaccattg accctgccaa gccatggtcc tactcccagg catgtgcctc
3901 acttgacaaa accacttcta gtggtagtcc ccatcatgtc aagaaaaatg accactggaa
3961 tggggagtct ttcaccggtc cacttgcaga tcaggcatct aaagctaacc tcatgtatga
4021 acaggccaaa catgtgcagc ccgtgtacac ggcagcgctt aaggatgagc ttgttaagac
4081 tgacaagatc tacaagaaga taaagaagag gctcctatgg gggtcggacc ttggcacaat
4141 gatcaggtgc gccagggctt ttggcggtct catggacagc atgaaggcaa gttgtatagc
4201 tcttccttgc agggtaggga tgaacatgaa tgaagatggc cccatcatat ttgacaaaca
4261 ctccaagtac aggtaccact atgatgctga ctattctagg tgggactcaa cccaacagag
4321 gagcattctc tctgccgcta tggaagtaat ggtgcggttt tctgccgaac cagaactggc
4381 acaggtggtt gcagaggatc ttttggctcc tagccagctt gacgttggtg actttgtcat
4441 ctcagtccag gaaggtctac catcaggagt cccatgcaca tcacaatgga attcaatagc
4501 acactggatc ctgactttga gtgcaatggc agaagtgtca ggtctctcac cagatgtagt
4561 ccaagctcac tcctgttttt cattttacgg ggacgatgag atcgtcagta ctgacatcaa
4621 tctcgaccct atgaagttga cacagaaact cagggagtat ggtctggtcc ccacccggcc
4681 tgataaaact gaaggccccc tcgtcataac tgaagacctc accggcctga cattcctccg
4741 taggtcgatt gctcgggacc cagctggttg gtttgggaaa ctggaccaag actcaattct
4801 cagacagcta tactggacaa gggggcctaa ccatgagaac ccgtacgaga gtatggttcc
4861 tcattctcag cgggctacac agctcatggc ccttcttggt gaggcctcgc tgcatggtcc
4921 acagttttac aagaaagtta gcaagatggt catcaatgag attaagagtg gtggcctgga
4981 gttttatgtg cccagacaag aggccatgtt caggtggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
5101 cagctccatc taatgatggt gcagcaggcc tcgtgccaga gatcaacaat gaggtcatgc
5161 cccttgagcc cgtggctggt gcatcgctgg cgacaccagt tgtcgggcaa caaaatataa
5221 ttgatccctg gataagaaat aattttgtac aagctcctgc aggtgagttt acagtttctc
5281 ctagaaattc ccctggtgaa attttgcttg atttggagtt gggaccagag ttgaacccct
5341 atctcgctca tcttgcccgc atgtacaatg ggcacgctgg tggtatggaa gtgcaaattg
5401 tgttggctgg gaacgcgttc acagctggca agatcatatt tgctgccatc cctccagggt
5461 tcccatatga aaatttgtca ccttcacaaa ttacaatgtg cccccatgta ataattgatg
5521 ttagacaatt agagccagtc ttattaccta tgccagatat cagaaataat ttcttccatt
5581 acaatcaggg taatgatcca aaattaagac tggtagctat gctttatact cctttaaggg
5641 ctaataattc tggtgatgat gtgttcacag tttcttgtag ggttctcact aaaccatcac
5701 ctgattttga attcacattt ttggtccccc ccacagttga atccaagacc aagcaattca
5761 cattgcccat ccttaaaata tcagagatga ccaactcaag attcccagtg ccggtggaaa
5821 tgatgtacac agcaaggaat gagaatcaag ttgtccagcc acagaatggt agggtcacac
5881 tcgatggcga gctattgggc accacgccct tgttggctgt caacatctgc aaattcaagg
5941 gagaggtcat agctaagaat ggagatgtga gatcctatag gatggacatg gaaatcacca
6001 acactgatgg taccccaatt gaccccactg aagatacacc tggtcccatt ggatcacctg
6061 actttcaagg tatactcttt ggcgttgcca gtcagcgcaa caaaaatgag cagaatcctg
6121 ccaccagagc ccatgaagcc aacatcaata ctggtgggga ccagtatgcc cccaaattgg
6181 cccaagtgaa attcttttca gagtcccagg atttcgaggt gcaccaaccc acagttttca
6241 ccccagttgg cgtggcaggt gataattccc accctttcag acagtgggtc ttgcctcgat
6301 atggtggaca tctcactaac aacactcacc tggctccagc agtggccccc ctattcccag
6361 gtgagcagat tctgttcttt agatcacaaa tacctagttc aggcggccat gaattgggtt
6421 acatggactg ccttgtccca caggaatggg tccaacactt ctaccaagaa gctgccacag
6481 ctcagtctga ggtggcactc ataaggttca ttaaccctga cactggcaga gtcctctttg
6541 aggccaagct acacaagcaa ggctttataa ctgtggctca caccggtgac aacccaattg
6601 tcatgccacc aaatgggtac ttcagatttg aagcctgggt caatcagttt tactcactcg
6661 cccccgtggg aactgggaat gggcgtagga ggatccaata atggccagtg ctttctttgc
6721 aaatttggca gggggcgtcg cctccaatgg aatcagttca ctcataaatg ctggggctaa
6781 tgctattaac caaaaggttg agtttgatta taataaacaa ctccaaaatg catccttctc
6841 ccatgataaa gaaatgctcc aagcccaaat tgaagccact aagcgtttgc aacaagagat
6901 gattgacata aaacaagggg tgctgacggc tgcgggattc tctcccacgg atgccgcgag
6961 gggttctgtt ggcgcgccaa tgacaaaatt agttgattgg agtggtacca gatattgggc
7021 tcctggtgcc atgaggacaa caggatattc tggaactttt acttacttgc ctcctatgca
7081 gtctgcttca tatgttaata atcagaatag acagcttttt aaggtagatt cttctccttc
7141 ttctttaagt ggctcttcag tttcttctgt taaaacacaa tcaactgctc tctccggcac
7201 ttcaagggtg gactcttcat ctcagtcgac cctgtcgacc aggccgagct caaggacatc
7261 tgattgggta cgtagccaaa atgaaaggtt gagccccttc atgaatggag cgttgcaaac
7321 agcgtatgta acgccaccat ctagtagggc accaagtgtc agcacagtct cgaccgtgcc
7381 gaaagaggtt ttggactcct ggacgcctat gtttaacact cacaggcagc cgctcttcgc
7441 ccacttgcgt aggcgagggg agtcacagat ttagtgaaaa gatcaattag gaaagtttga
7501 ttagttttct t
//