Typing tool
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Typing tool
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Complete norovirus genomes
| LC877031 | GII.7 | |
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| GII.P7 |
ORF1: 1..5080
ORF2: 5061..6683
ORF3: 6683..7456
LOCUS LC877031 7477 bp RNA linear VRL 31-MAY-2025
DEFINITION Norovirus GII.7 Hu/GII.7[P7]/TKY789/2024/JPN RNA, nearly complete
genome.
ACCESSION LC877031
VERSION LC877031.1
KEYWORDS .
SOURCE Norovirus GII.7
ORGANISM Norovirus GII.7
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7477)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2025) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 24
Genome Coverage :: 239.33x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7477
/organism="Norovirus GII.7"
/mol_type="genomic RNA"
/isolate="Hu/GII.7[P7]/TKY789/2024/JPN"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:490042"
/geo_loc_name="Japan"
/collection_date="2024-08"
/note="genotype: GII.7"
CDS <1..5080
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BGF32856.1"
/translation="NDATAALGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKKMLGAV
PKGTKAPSSSQNCPTVNIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQNEH
ENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAISL
ATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTW
LNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKL
KPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPEDL
AVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPK
KEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTK
SSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLA
KSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCP
VTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKV
KRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVA
GLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKSVKTLE
DLKAALRDVKFNECEIIYKSSKYRVSSNGKGSVSVDKIADNASQTVNEVHSALLRLRQ
ARARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETHEVNEPEKETAQG
GWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEY
LQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGSDIRK
RRPDDFQPKGDLWADDTRSVDYNEKLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTT
HVLPKGIKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSVLV
KRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIY
KRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPKL
STKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPPRP
AVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESFTG
PLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCA
RAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSI
LSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIA
HWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLKEYGLVPT
RPDKTEGPLVITEDLAGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYE
SMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMR
FSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5061..6683
/note="ORF2"
/codon_start=1
/product="VP1 protein"
/protein_id="BGF32857.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFRGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHESGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
CDS 6683..7456
/note="ORF3"
/codon_start=1
/product="VP2 protein"
/protein_id="BGF32858.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLSPMQSASYVNNQNRQLFKVDPSPFSSSGSSVSSVKTQ
STALSGTSRVGSSSQSTLSTRPSSRTSDWVRSQNERLSPFMNGALQTAYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 taacgacgct accgctgccc ttggcagtca aaactctgtc aatgacagta acaacgccac
61 cccttctaac aaagaagagg ttggtgcatt ctccaacatt aaagttggat ttaagaaaat
121 gctgggcgcc gtacccaaag gtaccaaagc gcccagcagt agtcaaaatt gccccacagt
181 taatatcggg cctaaaaccc taacaatccc ccctgagccc ccaaacggtg aggatacagt
241 acaatttgat gcaaagtcag aaactataat tgggctacca gacttgacaa cggtgcaaaa
301 cgaacacgaa aacaccccat atactgtccc tccactaagt gagagggagc acagaccggc
361 cactgaaccg cttcctggca caatattgga gatgtgggat ggtgagttct accattactc
421 cgtgtacgtc agcgatggca aagctctggg agtccacaaa ccaccggcgg ccataagcct
481 cgcgacgata gagctcaccc ccatatcact ctactggagg cccgtttaca ctcccaacta
541 cttagtctct ccagacacat taaagggcct cgctggtgag aagtttccct acacggcctt
601 cagtaataac tgttacaatt tctgttgttg ggtgcttgag ctcaacgaca cgtggcttaa
661 cagaagatgc atttctagaa ctaccggctt cttcaaacca taccagtctt ggaatagaaa
721 acctctccca actgttgatg atggaaagat caaaaaggtg gccaatgcga tcctctgtgc
781 actcggttcg ctgttttcaa aaccaattaa agacctacta ggtaaactca agccattgaa
841 tctgctacac ttgctcgcgt cctgtgattg gacgtttgca ggcatagtgg agacagtcat
901 cttaatggcg gaacttttca atgtgttctg gaccccacca gatgtctcca attttatagc
961 ttccctgata ggcgattttg aattgcaagg gcctgaagac ctggctgtag agctcgtccc
1021 cgtggtcatg ggtggcatag ggatggttct cggcttcact gctgagaaga ttggccgcat
1081 gctgtcgtcc gctgcatcaa cactgcgggc atgcaaagac ctagggaact acgcccttga
1141 catactcaaa ttggtcatga aatggttctt cccgaagaag gaagagaagg ctgagatgga
1201 aaccctgagg gcgattgaag acgccgtcct tgatatggaa gctataggga ataaccatct
1261 cacgaccctc ctcaaggaca aagacagcct cacagctttc atgaagacct tggatctaga
1321 agaggagaag gcgaggaagc tgtccaccaa atcatcctca ccggacatag tcggcaccat
1381 caacgccata ttagctagga tagctgccgc tagatccctt ctacataagg ccaaagaaga
1441 gatgttcagt aggatcagac cagtggtcgt catgatctca ggcagacctg gcattggaaa
1501 gacccacatg gctagacact tggccaagag catcgccaat accatgagtg gtgatcagag
1561 agtcggactc gttccacgca acggtgtcga tcattgggac gcctacagag gagagagggt
1621 ggtcttgtgg gatgactacg gtatggggag ccctgtcaaa gatgccctga cactgcaaga
1681 gttggccgac acatgtccag tcactttaaa ttgtgacagg attgagaata agggaaagat
1741 gtttgatagt gatgtcatca taatcacgac caacttagtc aaccctgcac ccctcgacta
1801 tgtgaacttc gaggcgtgtt ctaggagagt tgacttcctg gtctatgcag agtcaccaga
1861 aattgaaaag gtcaagagag acttccctgg ccagcctgac atgtggaagg accattttaa
1921 accagacttt tcccatatca agttgactct agccccccag ggtgggtttg acaaaaatgg
1981 caacacccca cacggcaagg gcaccatgcg gtccttaact caggggtccc taactgcgag
2041 agtcgcaggc cttgtccatg agaggaggga cgagttccaa ctccaaggaa acgacctcca
2101 gacatacaac tttgacacca atagagtctc cgcattcaga aaactggctg cagataacaa
2161 gtatggtatt atggagacga tgagagttgg tgcagcgctc aagagtgtga agaccttgga
2221 agatctcaaa gctgcattga gggatgtgaa atttaatgag tgtgaaataa tttacaagag
2281 ctctaagtac cgagtctctt ccaacggcaa aggctcggtc tctgttgaca aaattgcaga
2341 caatgcttcc cagactgtga acgaggtgca ctcagcactt cttagactca ggcaagcaag
2401 ggccaggtat tacatcagct gcttccaaga tctcgtttac actctcatac aggttgccgg
2461 ggcatcattc gtcgtcagta ggatctctag aaggttctgc tgggaaaggt gggtaaaacc
2521 gaccgagacc catgaagtga atgagcccga gaaggaaaca gcccagggtg gatgggagat
2581 tgagcccaag gacacagaac cagaaggcaa gaagggcaag aacaagaaag gaaggggcaa
2641 gaaacacaca gctttttcta gcaaaggcct gagtgatgaa gagtatgatg agttcaagag
2701 aatcagggaa gaaagaaacg gaaagtactc cattgaggag tacctgcagg accgagaccg
2761 ttattatgaa gaggtggcgg ttgctcgggc gacagaggag gacttctgtg aagaggaaga
2821 agccaagata agacaaagaa ttttccgccc gactaggaaa cagaggaagg aggaaagggg
2881 cgtgcttggc ttggtcactg gctcagatat cagaaagagg agacccgacg acttccaacc
2941 aaagggcgac ctatgggcag atgacaccag aagtgtagat tacaatgaga agcttgattt
3001 tgaagcacct ccaagtgttt ggtcaagaat agtcccattg ggcactggtt gggggttttg
3061 ggtttcatcc aaccttctga tcacaacaac acacgtcctg cccaaaggga tcaaggaact
3121 ctttggagtt gagatcaaac aaatccaagt tcataagtct ggagagtttt gcaggtttag
3181 gtttccaaga cccatcaggc cagatgtcac aggactcgtg ctggaggaag gcgccccaga
3241 gggcactgtc tgttctgtac tcgtaaaaag gcccacaggt gaaatgatcc cccttgcagt
3301 gaggatgggt acgcacgcat ccatgaaaat acagggcaga acagttggtg gccagatggg
3361 gatgctcctc acgggagcaa acgcgaagaa catggatctc ggcactggtc ctggtgactg
3421 cggttgcccc tacatctaca aacgtggcaa cgatatagtt gtcgcgggtg ttcacaccgc
3481 agcagcccgt gggggcaaca ctgtcatatg tgccacccaa gggcaagacg gggaagcggt
3541 ccttgaggga aatgaggacc ttggcaccta ctgtggtgcc ccaattctgg gtcctggcaa
3601 ggcgcccaaa ctcagcacga agaccaaatt ctggcgctca tcaccagacg ccttgccacc
3661 tggtacatac gaacctgctt acctaggtgg caaagaccct agagtggaaa aaggtccctc
3721 cctgcagcaa gttatgagag accagttgag acccttcaca gagcccaggg gcaaaccgcc
3781 cagacctgca gtcctggagg aagccaaaaa gacagtgatg aatgttttag aacaaaccat
3841 tgaccctgcc aagccatggt cctactccca ggcatgtgcc tcacttgaca aaaccacttc
3901 tagtggtagt ccccatcatg tcaagaaaaa tgaccactgg aatggggagt ccttcactgg
3961 tccacttgca gatcaggcat ctaaagctaa cctcatgtat gaacaggcca aacatgtgca
4021 gcccgtgtac acggcagcgc ttaaagatga gcttgttaag actgacaaga tctacaagaa
4081 gataaagaag aggctcctat gggggtcgga ccttggcaca atgatcaggt gcgccagggc
4141 ttttggcggt ctcatggaca gcatgaaggc aagttgtata gctcttcctt gcagggtagg
4201 gatgaacatg aatgaagatg gccccatcat atttgacaaa cactccaagt acaggtacca
4261 ctatgatgct gactattcta ggtgggactc aacccaacag aggagtattc tctctgccgc
4321 tatggaagta atggtgcggt tttctgccga accagaactg gcacaagtgg ttgcggagga
4381 ccttttggct cctagccagc ttgacgttgg tgacttcgtc atctcagtcc aggaaggttt
4441 accatcagga gtcccatgca catcacaatg gaattcaata gcacactgga tcctgacttt
4501 gagtgcaatg gcagaagtgt caggtctctc accagatgta gtccaagctc actcctgttt
4561 ttcattttac ggggacgatg agatcgtcag tactgacatc aatctcgacc ctatgaagtt
4621 gacacagaaa ctcaaggagt atggtctggt ccccacccgg cctgataaaa ctgaaggccc
4681 cctcgtcata actgaagacc tcgccggcct gacattcctc cgtaggtcga ttgctcggga
4741 cccagctggt tggtttggga aactggacca agactcaatt ctcagacagc tatactggac
4801 aagggggcct aaccatgaga acccgtacga gagtatggtt cctcattctc agcgggctac
4861 acagctcatg gcccttcttg gtgaggcctc gctgcatggt ccacagtttt acaagaaagt
4921 tagcaagatg gtcatcaatg agattaagag tggtggtctg gagttttatg tgcccagaca
4981 agaggccatg ttcaggtgga tgagattctc cgacctcagc acatgggagg gcgatcgcaa
5041 tcttgctccc gaaggtgtga atgaagatgg cgtcgaatga cgcagctcca tctaatgatg
5101 gcgcagcagg cctcgtgcca gagatcaaca atgaggtcat gccccttgag cccgtggctg
5161 gtgcatcgct ggcgacacca gttgtcgggc aacaaaacat aattgatccc tggataagaa
5221 ataattttgt acaagctcct gcaggtgagt ttacagtttc tcctagaaat tcccctggtg
5281 aaattttgct tgatttggag ttgggaccag agttgaaccc ctatctcgct catcttgccc
5341 gtatgtataa tgggcacgct ggtggcatgg aagtgcaaat tgtgttggct gggaacgcgt
5401 tcacagctgg caagatcata tttgctgcca tccctccagg gttcccatat gaaaatttgt
5461 caccttcaca aattacaatg tgcccccatg ttataattga tgttagacaa ttagagccag
5521 tcttattacc tatgccagat atcagaaaca atttcttcca ttacaatcag ggtaatgatc
5581 caaaattaag actggtagct atgctctata ctcctttaag ggctaataat tctggtgatg
5641 atgtgttcac agtttcttgt agggttctca ctaaaccatc acctgatttt gaattcacat
5701 ttttggtccc ccctacagtt gaatctaaga ccaagcaatt cacattgccc atccttaaaa
5761 tatcagagat gaccaactca agattcccag tgccggtgga aatgatgtac acagcaagga
5821 atgagaatca agttgtccag ccacagaatg gtagggtcac actcgatggc gagctattgg
5881 gcaccacgcc cttgttggct gtcaacatct gcaaattcag gggagaggtc atagctaaga
5941 atggagatgt gagatcctat aggatggaca tggaaatcac caacactgat ggcaccccaa
6001 ttgaccccac tgaagataca cctggtccca ttggatcacc tgactttcaa ggtatactct
6061 ttggcgttgc cagtcagcgc aacaaaaatg agcagaatcc tgctaccaga gcccatgaag
6121 ccaacatcaa tactggtggg gaccaatatg cccccaaatt ggcccaagtg aaattctttt
6181 cagagtccca ggatttcgag gtgcaccaac ccacagtttt caccccagtt ggtgtggcag
6241 gtgatacttc ccaccctttc agacagtggg tcttgcctcg atatggtgga catctcacca
6301 acaacactca cttggctcca gcagtggccc ccctattccc aggtgagcag attctgttct
6361 ttagatcaca aatacctagt tcaggcggcc atgaatcggg ttacatggac tgccttgtcc
6421 cacaggaatg ggtccaacac ttctaccaag aagctgccac agctcagtct gaggtggcac
6481 tcataaggtt cattaaccct gacactggca gagtcctctt tgaggccaag ctacacaagc
6541 aaggctttat aactgtggct cacaccggtg acaacccaat tgttatgcca ccaaatgggt
6601 acttcagatt tgaagcctgg gtcaatcagt tttactcact cgcccccgtg ggaactggga
6661 atgggcgtag gaggatccaa taatggccag tgctttcttt gcaaatttgg cagggggcgt
6721 cgcctccaat ggaatcagtt cactcataaa tgctggggct aatgctatta accaaaaggt
6781 tgagtttgat tataataaac aactccaaaa tgcatccttc tcccacgata aagaaatgct
6841 ccaagcccaa attgaagcca ctaaacgttt gcaacaagag atgattgaca taaaacaagg
6901 ggtgctgacg gctgcgggat tctctcccac ggatgccgcg aggggttctg ttggcgcgcc
6961 aatgacaaaa ttagttgatt ggagtggtac cagatattgg gctcctggtg ccatgaggac
7021 aacaggatat tcaggaactt ttactcactt gtctcctatg cagtctgctt catatgttaa
7081 taatcagaat agacagcttt ttaaagtaga tccttctcct ttttcttcaa gtggttcttc
7141 agtttcttct gttaaaacac aatcaactgc tctctccggc acttcaaggg tgggctcttc
7201 atctcagtca accctgtcga ccaggccgag ctcaaggaca tctgattggg tacgtagcca
7261 aaatgaaagg ttgagcccct tcatgaatgg agcgttgcaa acagcgtatg taacgccacc
7321 atctagtagg gcatcaagtg tcagcacagt ctcgaccgtg ccgaaagagg ttttggactc
7381 ctggacgccc atgtttaaca ctcacaggca gccgctcttc gcccacttgc gtaggcgagg
7441 ggagtcacag atttagtgaa aagattaatt aggaaag
//