Typing tool
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Typing tool
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Complete norovirus genomes
| LC877030 | GII.7 | |
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| GII.P7 |
ORF1: 1..5052
ORF2: 5033..6655
ORF3: 6655..7428
LOCUS LC877030 7448 bp RNA linear VRL 31-MAY-2025
DEFINITION Norovirus GII.7 Hu/GII.7[P7]/TKY784/2024/JPN RNA, nearly complete
genome.
ACCESSION LC877030
VERSION LC877030.1
KEYWORDS .
SOURCE Norovirus GII.7
ORGANISM Norovirus GII.7
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7448)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2025) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 24
Genome Coverage :: 40.71x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7448
/organism="Norovirus GII.7"
/mol_type="genomic RNA"
/isolate="Hu/GII.7[P7]/TKY784/2024/JPN"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:490042"
/geo_loc_name="Japan"
/collection_date="2024-08"
/note="genotype: GII.7"
CDS <1..5052
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BGF32853.1"
/translation="QNSVNDSNNATPSNKEEVGAFSNIKVGFKKMLGAVPKGTKAPSS
SQNCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQNEHENTPYTVPP
LSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAISLATIELTPIS
LYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLNRRCISRT
TGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLLHLL
ASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPEDLAVELVPVVM
GGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAEMET
LRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDIVGT
INAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAKSIANTMSG
DQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCPVTLNCDRIE
NKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPGQPD
MWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHERRDE
FQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKSVKTLEDLKAALRDV
KFNECEIIYKSSKYRVSSNGKGSVSVDKIADNASQTVNEVHSALLRLRQARARYYISC
FQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETHEVNEPEKETAQGGWEIEPKDT
EPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDRYYE
EVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGSDIRKRRPDDFQPK
GDLWADDTRSVDYNEKLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGIKE
LFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSVLVKRPTGEMIP
LAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIVVA
GVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPKLSTKTKFWRS
SPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPPRPAVLEEAKKT
VMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQASKA
NLMYEQAKHVQPVYTAALKDELIKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLMDS
MKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEVMV
RFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAM
AEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPL
VITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRA
TQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEG
DRNLAPEGVNEDGVE"
CDS 5033..6655
/note="ORF2"
/codon_start=1
/product="VP1 protein"
/protein_id="BGF32854.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWILPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
CDS 6655..7428
/note="ORF3"
/codon_start=1
/product="VP2 protein"
/protein_id="BGF32855.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTYLPPMQSASYVNNQNRQLLKVDPSPSSSSGSSVSSVGTQ
STALSGTSRVGSSSQSTLSTRPSSRTSDWVRSQNERLSPFMNGALQTAYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRKRGESQI"
ORIGIN
1 caaaactctg tcaatgacag taacaacgcc accccttcta acaaagaaga ggttggtgca
61 ttctccaaca ttaaagttgg atttaagaaa atgctgggcg ccgtacccaa aggtaccaaa
121 gcgcccagca gtagtcaaaa ttgccccaca gttaagatcg ggcctaaaac gctaacaatc
181 ccccctgagc ccccaaacgg tgaggataca gtacaatttg atgcaaagtc agaaactata
241 attgggctac cagacttgac aacggtgcaa aacgaacacg aaaacacccc atatactgtc
301 cctccactaa gtgagaggga gcacagaccg gccactgaac cgcttcctgg cacaatattg
361 gagatgtggg atggtgagtt ctaccattac tccgtgtacg tcagtgatgg caaagctctg
421 ggagtccaca aaccaccggc ggccataagc ctcgcgacga tagagctcac ccccatatca
481 ctctactgga ggcccgttta cactcccaac tacttagtct ctccagacac attaaagggc
541 ctcgctggtg agaagttccc ctacacggcc ttcagtaata actgttacaa tttctgttgt
601 tgggtgcttg agctcaacga cacgtggctt aacagaagat gcatttctag aactaccggc
661 ttcttcaaac cataccagtc ttggaataga aaacctctcc caactgttga tgatggaaag
721 atcaaaaagg tggccaatgc gatcctctgt gcactcggtt cgctgttttc aaaaccaatt
781 aaagacctac taggtaaact caagccattg aatctgctac acttgctcgc gtcctgtgat
841 tggacgtttg caggcatagt ggagacagtc atcttaatgg cggaactttt caatgtgttc
901 tggaccccac cagatgtctc caattttata gcttccctga taggtgattt tgaattgcaa
961 gggcctgaag acctggctgt agagctcgtc cccgtggtta tgggtggcat agggatggtt
1021 ctcggcttca ctgctgagaa gattggccgc atgctgtcgt ccgctgcatc aacactgcgg
1081 gcatgcaaag acctagggaa ctacgccctt gacatactca aattggtcat gaaatggttc
1141 ttcccgaaga aggaagagaa ggctgagatg gaaaccctga gggcgattga agacgccgtc
1201 cttgatatgg aagctatagg gaataaccat ctcacgaccc tcctcaagga caaagacagc
1261 ctcacagctt tcatgaagac cttggatcta gaagaggaga aggcgaggaa gctgtccacc
1321 aaatcatcct caccggacat agtcggcacc atcaacgcca tattagctag gatagctgcc
1381 gctagatccc ttctacataa ggccaaagaa gagatgttca gtaggatcag accagtggtc
1441 gtcatgatct caggcagacc tggcattgga aagacccaca tggctagaca cttggccaag
1501 agcatcgcca ataccatgag tggtgatcag agagtcggac tcgttccacg caacggtgtc
1561 gatcattggg acgcctacag aggagagagg gtggtcttgt gggatgacta cggtatgggg
1621 agccctgtca aagatgccct gacactgcaa gagttggccg acacatgtcc agtcacttta
1681 aattgtgaca ggattgagaa taagggaaag atgtttgata gtgatgtcat cataatcacg
1741 accaacttag tcaaccctgc acccctcgac tatgtgaact tcgaggcgtg ttctaggaga
1801 gtcgacttcc tggtctatgc agagtcacca gaaattgaaa aggtcaagag agacttccct
1861 ggccagcctg acatgtggaa ggaccatttt aaaccagact tttcccatat caagttgact
1921 ctagcccccc agggtgggtt tgacaaaaat ggcaacaccc cacacggcaa gggtaccatg
1981 cggtccttaa ctcagggatc cctaactgcg agagtcgcag gccttgtcca tgagaggagg
2041 gacgagttcc aactccaagg aaacgacctc cagacataca actttgacac caatagagtc
2101 tccgcattca gaaaattggc tgcagataac aaatatggca ttatggagac gatgagagtt
2161 ggtgcagcgc tcaagagtgt gaagaccttg gaagatctca aagctgcatt gagggatgtg
2221 aaatttaatg agtgtgaaat aatttacaag agctctaagt accgagtctc ttccaacggc
2281 aaaggctcgg tctctgttga caaaattgca gacaatgctt cccagactgt gaacgaggtg
2341 cattcagcac ttcttagact caggcaagca agggccaggt attacatcag ctgcttccaa
2401 gatctcgttt acactctcat acaggttgcc ggggcatcat tcgtcgtcag taggatctct
2461 agaaggttct gctgggaaag gtgggtaaaa ccgaccgaga cccatgaagt gaatgagccc
2521 gaaaaggaaa cagcccaggg tggatgggag attgagccca aggacacaga accagaaggc
2581 aagaagggca agaacaagaa aggaaggggc aagaaacaca cagctttttc tagcaaaggc
2641 ctgagtgatg aagagtatga tgagttcaag agaatcaggg aagaaagaaa cggaaagtac
2701 tccattgagg agtacctgca ggaccgagac cgttattatg aagaggtggc ggttgctcgg
2761 gcgacagagg aggacttctg tgaagaggaa gaagccaaga taagacaaag aatttttcgc
2821 ccgactagga aacagaggaa ggaggaaagg ggcgtgcttg gcttggtcac tggctcagat
2881 atcagaaaga ggaggcccga cgacttccaa ccaaagggcg acctatgggc agatgacacc
2941 agaagtgtag actacaatga gaagcttgat tttgaagcac ctccaagtgt ttggtcaaga
3001 atagtcccat tgggcactgg ttgggggttt tgggtttcat ccaaccttct gatcacaaca
3061 acacacgtcc tgcccaaagg gatcaaggaa ctctttggag ttgagatcaa acaaatccaa
3121 gttcataagt ctggagagtt ttgcaggttt aggtttccaa gacccatcag gccagatgtc
3181 acaggactcg tgctggaaga aggcgcccca gagggcactg tctgttctgt actcgtaaaa
3241 agacccacag gtgaaatgat cccccttgca gtgaggatgg gtacgcacgc atccatgaaa
3301 atacagggca ggacagttgg tggccagatg gggatgctcc ttacgggagc aaacgcgaag
3361 aacatggatc tcggcactgg tcctggtgac tgcggttgcc cctacatcta caaacgtggc
3421 aacgatatag ttgtcgcggg tgttcacacc gcagcagccc gtgggggcaa cactgtcata
3481 tgtgccaccc aagggcaaga cggggaagcg gtccttgagg gaaatgagga ccttggcacc
3541 tactgtggtg ccccaattct gggtcctggc aaggcgccca aactcagcac gaagaccaaa
3601 ttctggcgct catcaccaga cgccttgcca cctggtacat acgaacctgc ttacctaggt
3661 ggcaaagacc ctagagtgga aaaaggtcct tccctgcagc aagttatgag agaccagttg
3721 agacccttca cagagcccag gggcaaaccg cccagacctg cagtcctgga ggaggccaaa
3781 aagacagtta tgaatgtttt agaacaaacc attgaccctg ccaagccatg gtcctactcc
3841 caggcatgtg cctcacttga caaaaccact tctagtggta gtccccatca tgtcaagaaa
3901 aatgaccact ggaatgggga gtccttcact ggtccacttg cagatcaggc atctaaagct
3961 aacctcatgt atgaacaggc caaacatgtg cagcccgtgt acacggcagc gcttaaagat
4021 gagcttatta agactgacaa gatctacaag aagataaaga agagactcct atgggggtcg
4081 gaccttggca caatgatcag gtgcgccagg gcttttggcg gtctcatgga cagcatgaag
4141 gcaagttgta tagctcttcc ttgcagggta gggatgaaca tgaatgaaga tggccccatc
4201 atatttgaca aacactccaa gtacaggtac cactatgatg ctgactattc taggtgggac
4261 tcaacccaac agaggagcat tctctctgcc gctatggaag taatggtgcg gttttctgcc
4321 gaaccagaac tggcacaagt ggttgcagag gatcttttgg ctcctagcca gcttgacgtt
4381 ggtgactttg tcatctcagt ccaggaaggt ctaccatcag gagtcccatg cacatcacaa
4441 tggaattcaa tagcacactg gatcctgact ttgagtgcaa tggcagaagt atcaggtctc
4501 tcaccagatg tagtccaagc tcactcctgt ttttcatttt acggggacga tgagatcgtc
4561 agtactgaca tcaatctcga ccccatgaag ttgacacaga aactcaggga gtatggtctg
4621 gtccccaccc ggcctgataa aactgaaggc cccctcgtca taactgaaga cctcaccggc
4681 ctgacattcc tccgtaggtc gattgctcgg gacccagctg gttggtttgg gaaactggac
4741 caagactcaa ttctcagaca gctatactgg acaagggggc ctaaccatga gaacccgtac
4801 gagagtatgg ttcctcattc tcagcgggct acacagctca tggcccttct tggtgaggcc
4861 tcgctgcatg gtccacagtt ttacaagaaa gttagcaaga tggtcatcaa tgagattaag
4921 agtggtggtc tggagtttta tgtgcccaga caagaggcca tgttcaggtg gatgagattc
4981 tctgacctca gcacatggga gggcgatcgc aatcttgctc ccgaaggtgt gaatgaagat
5041 ggcgtcgaat gacgcagctc catctaatga tggtgcagca ggcctcgtgc cagagatcaa
5101 caatgaggtc atgccccttg agcccgtggc tggtgcatcg ctggcgacac cagttgtcgg
5161 gcaacaaaac ataattgatc cctggataag aaataatttt gtacaagctc ctgcaggtga
5221 gtttacagtt tctcctagaa attcccctgg tgaaattctg cttgatttgg agttgggacc
5281 agagttgaac ccctacctcg ctcatcttgc ccgtatgtat aatgggcacg ctggtggcat
5341 ggaagtgcaa attgtgttgg ctgggaacgc gttcacagct ggcaagatca tatttgctgc
5401 catccctcca gggttcccat atgaaaattt gtcaccttca caaattacaa tgtgccccca
5461 tgttataatt gatgttagac aattagagcc agtcttatta cctatgccag atatcagaaa
5521 taatttcttc cattacaatc agggtaatga tccaaaatta agactggtag ccatgctcta
5581 tactccttta agggctaata attctggtga tgatgtgttc acagtttctt gtagggttct
5641 cactaaacca tcacctgatt ttgaatttac atttttggtc ccccctacag ttgaatccaa
5701 gaccaagcaa ttcacattgc ccatccttaa aatatcagag atgaccaact caagattccc
5761 agtgccggtg gaaatgatgt acacagcaag gaatgagaat caagttgtcc agccacagaa
5821 tggtagggtc acactcgatg gcgagctatt gggcaccacg cccttgttgg ctgttaacat
5881 ctgcaaattc aagggagagg ttatagctaa gaatggagat gtgagatcct ataggatgga
5941 catggaaatc accaacactg atggcacccc aattgacccc actgaagata cacctggtcc
6001 cattggatca cctgactttc aaggtatact ctttggcgtt gccagtcagc gcaacaaaaa
6061 tgagcagaat cctgctacca gagcccatga agccaacatc aatactggtg gagaccaata
6121 tgcccccaaa ttggcccaag tgaaattctt ttcagagtcc caggatttcg aggtgcacca
6181 acccacagtt ttcaccccag ttggtgtggc aggtgatact tcccaccctt tcagacagtg
6241 gatcttgcct cgatatggtg gacatctcac caacaacact cacttggctc cagcagtggc
6301 ccccctattc ccaggtgagc agattctgtt ctttagatca caaataccta gttcaggcgg
6361 ccatgaattg ggttacatgg actgccttgt cccacaggaa tgggtccaac acttctacca
6421 agaagctgcc acagctcagt ctgaggtggc actcataagg ttcattaacc ctgacactgg
6481 cagagtcctc tttgaggcca agctacacaa gcaaggcttt ataactgtgg ctcacaccgg
6541 tgacaaccca attgtcatgc caccaaatgg gtacttcaga tttgaagcct gggtcaatca
6601 gttttactca ctcgcccccg tgggaactgg gaatgggcgt aggaggatcc aataatggcc
6661 agtgctttct ttgcaaattt ggcagggggc gtcgcctcca atggaatcag ttcactcata
6721 aatgctgggg ctaatgctat taaccaaaag gttgagtttg attataataa acaactccaa
6781 aatgcatcct tctcccacga taaagaaatg ctccaagccc aaattgaagc cactaaacgt
6841 ttgcaacaag agatgattga cataaaacaa ggggtgctga cggctgcggg attctctccc
6901 acggatgccg cgaggggttc tgttggcgcg ccaatgacaa aattagttga ttggagtggt
6961 accagatatt gggctcctgg tgccatgagg acaacaggat attcagggac ttttacttac
7021 ttgcctccca tgcagtctgc ttcatatgtt aataatcaga atagacagct tcttaaagta
7081 gatccttctc cttcttcttc aagtggctct tcagtttctt ctgttggaac acaatcaact
7141 gctctctccg gcacttcaag ggtgggctct tcatctcagt caaccctgtc gaccaggccg
7201 agctcaagga catctgattg ggtacgtagc caaaatgaaa ggttgagccc cttcatgaat
7261 ggagcgttgc aaacagcgta tgtaacgcca ccatctagta gggcatcaag tgtcagcaca
7321 gtctcgaccg tgccgaaaga ggttttggac tcctggacgc ctatgtttaa cactcacagg
7381 cagccgctct tcgcccactt gcgtaagcga ggggagtcac agatttagtg aaaagatcaa
7441 ttaggaaa
//