Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| LC877028 | GII.7 | |
|
|---|---|---|---|
| GII.P7 |
ORF1: 1..5086
ORF2: 5067..6689
ORF3: 6689..7462
LOCUS LC877028 7469 bp RNA linear VRL 31-MAY-2025
DEFINITION Norovirus GII.7 Hu/GII.7[P7]/TKY330/2024/JPN RNA, nearly complete
genome.
ACCESSION LC877028
VERSION LC877028.1
KEYWORDS .
SOURCE Norovirus GII.7
ORGANISM Norovirus GII.7
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7469)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2025) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 24
Genome Coverage :: 126.18x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7469
/organism="Norovirus GII.7"
/mol_type="genomic RNA"
/isolate="Hu/GII.7[P7]/TKY330/2024/JPN"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:490042"
/geo_loc_name="Japan"
/collection_date="2024-05"
/note="genotype: GII.7"
CDS <1..5086
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BGF32847.1"
/translation="ASNDATAALGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKKMLG
AVPKGTKAPSSSQNRPTIKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQN
EHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAI
SLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELND
TWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLIG
KLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPE
DLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFF
PKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLS
TKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARH
LAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADT
CPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIE
KVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTAR
VAGLVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKSVKT
LEDLKAALRDVKFNECEIIYKSSKYRVSSNGKGSVSVDKIADNASQTVNEVHSALLRL
RQARARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETHEVNEPEKETA
QGGWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIE
EYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGSDI
RKRRPDDFQPKGDLWADDTRSVDYNEKLDFEAPPSVWSRIVPLGTGWGFWVSSNLLIT
TTHVLPKGIKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSV
LVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPY
IYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAP
KLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPP
RPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESF
TGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIR
CARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQR
SILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNS
IAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLV
PTRPDKTEGPLVITEDLTGLTFLRRSVARDPAGWFGKLDQDSILRQLYWTRGPNHENP
YESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRW
MRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5067..6689
/note="ORF2"
/codon_start=1
/product="VP1 protein"
/protein_id="BGF32848.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWILPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYTLAPVGTGNGRRRIQ"
CDS 6689..7462
/note="ORF3"
/codon_start=1
/product="VP2 protein"
/protein_id="BGF32849.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPVQSASYVNNQNRQLFKVDPSPSSSSGSSVSSVKTQ
STALSGTSRVGSSSQSTLSTRPSSRTSDWVRSQNERLSPFMNGALQTAYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRKRGESQI"
ORIGIN
1 ggcgtctaac gacgctaccg ctgcccttgg cagtcaaaac tctgtcaatg acagtaacaa
61 cgccacccct tccaacaaag aagaggttgg tgcattctcc aacattaaag ttggatttaa
121 gaaaatgctg ggcgccgtac ccaagggtac caaagcaccc agcagtagtc aaaatcgccc
181 cacaatcaag atcgggccta aaacgctaac aatcccccct gagcccccaa acggtgagga
241 tacagtacaa tttgatgcaa agtcagaaac tataattggg ctaccagact tgacaacggt
301 gcaaaatgaa cacgaaaaca ccccatatac tgtccctcca ctaagtgaga gggagcacag
361 accggccact gaaccgcttc ctggcacaat attggagatg tgggatggtg agttctacca
421 ttactccgtg tacgtcagcg atggcaaagc tctgggagtc cacaaaccac cggcggccat
481 aagcctcgcg acgatagagc tcacccccat atcactctac tggaggcccg tttacactcc
541 caactactta gtctctccag acacattaaa gggcctcgct ggtgagaagt tcccctacac
601 ggccttcagt aataactgtt acaatttctg ttgttgggtg cttgagctca acgacacgtg
661 gcttaacaga agatgcattt ctagaactac cggtttcttc aaaccatacc agtcttggaa
721 tagaaaacct ctcccaactg ttgatgatgg aaagatcaaa aaggtggcca atgcgatcct
781 ctgtgcactc ggttcgctgt tttcaaaacc aattaaagac ctaataggta aactcaagcc
841 attgaatctg ctacacttgc tcgcgtcctg tgattggacg tttgcaggca tagtggagac
901 agtcatctta atggcggaac ttttcaatgt gttctggacc ccaccagatg tctccaattt
961 tatagcttcc ctgataggtg attttgaatt gcaagggcct gaagacctgg ctgtagagct
1021 cgtccccgtg gttatgggtg gcatagggat ggttctcggc ttcactgctg agaagattgg
1081 ccgcatgctg tcgtccgctg catcaacgct gcgggcatgc aaagacctag ggaactacgc
1141 ccttgacata ctcaaattgg tcatgaaatg gttcttcccg aagaaggaag agaaggctga
1201 gatggaaacc ctgagggcga ttgaagacgc cgtccttgat atggaagcta tagggaataa
1261 ccatctcacg accctcctca aggacaaaga cagcctcaca gctttcatga agaccttgga
1321 tctagaagag gagaaggcga ggaagctgtc caccaaatca tcctcaccgg acatagtcgg
1381 caccatcaac gccatattag ctaggatagc tgccgctaga tcccttctac ataaggccaa
1441 agaagagatg ttcagtagga tcagaccagt ggtcgtcatg atctcaggca gacctggcat
1501 tggaaagacc cacatggcta gacacttggc caagagcatc gccaatacca tgagtggtga
1561 tcagagagtc ggactcgttc cacgcaacgg tgtcgatcat tgggacgcct acagaggaga
1621 gagggtggtc ttgtgggatg actacggtat ggggagccct gtcaaagatg ccctgacact
1681 gcaagagttg gccgacacat gtccagtcac tttaaattgt gacaggattg agaataaggg
1741 aaagatgttt gatagtgatg tcatcataat cacgaccaac ttagtcaacc ctgcacccct
1801 cgactatgtg aacttcgagg cgtgttctag gagagttgac ttcctggtct atgcagagtc
1861 accagaaatt gaaaaggtca agagagactt ccctggccag cctgacatgt ggaaggacca
1921 ttttaaacca gacttttccc atatcaagtt gactctagcc ccccagggtg ggtttgacaa
1981 aaatggcaac accccacacg gcaagggcac catgcggtcc ttaactcagg ggtccctaac
2041 tgcgagagtc gcaggccttg tccatgagag gaaggacgag ttccaactcc aaggaaacga
2101 cctccagaca tacaactttg acaccaatag agtctccgca ttcagaaaat tggctgcaga
2161 taacaagtat ggcattatgg agacgatgag agttggtgca gcgctcaaga gtgtgaagac
2221 cttggaagat ctcaaagctg cattgaggga tgtgaaattt aatgagtgtg aaataattta
2281 caagagctct aagtaccgag tctcttccaa cggcaaaggc tcggtctctg ttgacaaaat
2341 tgcagacaat gcttcccaga ctgtgaacga ggtgcattca gcacttctta gactcaggca
2401 agcaagggcc aggtattaca tcagctgctt ccaagatctc gtttacactc tcatacaggt
2461 tgccggggca tcattcgtcg tcagtaggat ctctagaagg ttctgctggg aaaggtgggt
2521 aaaaccgacc gagacccatg aagtgaatga gcccgaaaag gaaacagccc agggtggatg
2581 ggagattgag cccaaggaca cagaaccaga aggcaagaag ggcaagaaca agaaaggaag
2641 gggcaagaaa cacacagctt tttctagcaa aggcctgagt gatgaagagt atgatgagtt
2701 caagagaatc agggaagaaa gaaacggaaa gtactccatt gaggagtacc tgcaggaccg
2761 agaccgttat tatgaagagg tggcggttgc tcgggcgaca gaggaggact tctgtgaaga
2821 ggaagaagcc aagataagac aaagaatttt ccgcccgact aggaaacaga ggaaggagga
2881 gaggggcgtg cttggcttgg tcactggctc agatatcaga aagaggagac ccgacgactt
2941 ccaaccaaag ggcgatttat gggcagatga caccagaagt gtagactaca atgagaagct
3001 tgattttgaa gcacctccaa gtgtttggtc aagaatagtc ccattgggca ctggttgggg
3061 gttttgggtt tcatccaacc ttctgatcac aacaacacac gtcctgccca aagggatcaa
3121 ggaactcttt ggagttgaga tcaaacaaat ccaagttcat aagtctggag agttttgcag
3181 gtttaggttt ccaagaccca tcaggccaga tgtcacagga ctcgtgctgg aggaaggcgc
3241 cccagagggc actgtctgtt ctgtactcgt aaaaagaccc acaggtgaaa tgatccccct
3301 tgcagtgagg atgggtacgc acgcatccat gaaaatacaa ggcagaacag ttggtggcca
3361 gatggggatg ctcctcacgg gagcaaacgc gaagaacatg gatctcggca ctggtcctgg
3421 tgactgcggt tgcccctaca tctacaaacg tggcaacgat atagttgtcg cgggtgttca
3481 caccgcagca gcccgtgggg gcaacactgt catatgtgcc acccaagggc aagacgggga
3541 agcggtcctt gagggaaatg aggaccttgg cacctactgt ggtgccccaa ttctgggtcc
3601 tggcaaggcg cccaaactca gcacgaagac caaattctgg cgctcatcac cagacgcctt
3661 gccacctggt acatacgaac ctgcttacct aggtggcaaa gaccctagag tggaaaaagg
3721 tccctccctg cagcaagtta tgagagacca gttgagaccc ttcacagagc ccaggggcaa
3781 accgcccaga cctgcagtcc tggaggaagc caaaaagaca gttatgaatg ttttagaaca
3841 aaccattgac cctgccaagc catggtccta ctcccaggca tgtgcctcac ttgacaaaac
3901 cacttctagt ggtagtcccc atcatgtcaa gaaaaatgac cactggaatg gggagtcctt
3961 cactggtcca cttgcagatc aggcatctaa agctaacctc atgtatgaac aggccaaaca
4021 tgtgcagccc gtgtacacgg cagcgcttaa agatgagctt gttaagactg acaagatcta
4081 caagaagata aagaagaggc tcctgtgggg gtcggacctt ggcacaatga tcaggtgcgc
4141 cagggctttt ggcggtctca tggacagcat gaaggcaagt tgtatagctc ttccttgcag
4201 ggtagggatg aacatgaatg aagatggccc catcatattt gacaaacact ccaagtacag
4261 gtaccactat gatgctgact attctaggtg ggactcaacc caacagagga gcattctctc
4321 tgccgctatg gaagtaatgg tgcggttttc tgccgaacca gaactggcac aagtggttgc
4381 agaggatctt ttagctccta gccagcttga cgttggtgac tttgtcatct cagtccagga
4441 aggtctacca tcaggagtcc catgcacatc acaatggaat tcaatagcac actggatcct
4501 gactttgagt gcaatggcag aagtatcagg tctctcacca gatgtagtcc aagctcactc
4561 ctgtttttca ttttatgggg acgatgagat cgtcagtact gacatcaatc tcgaccccat
4621 gaagttgaca cagaaactca gggagtatgg tctggtcccc acccggcctg ataaaactga
4681 aggccccctc gtcataactg aagacctcac cggcctgaca ttcctccgta ggtcggttgc
4741 tcgggaccca gctggttggt ttgggaaact ggaccaagac tcaattctca gacagctata
4801 ctggacaagg gggcctaacc atgagaaccc gtacgagagt atggttcctc attctcagcg
4861 ggctacacag ctcatggccc ttcttggtga ggcctcgctg catggtccac agttttacaa
4921 gaaagttagc aagatggtca tcaatgagat taagagtggt ggtctggagt tttatgtgcc
4981 cagacaagag gccatgttca ggtggatgag attctctgac ctcagcacat gggagggcga
5041 tcgcaatctt gctcccgaag gtgtgaatga agatggcgtc gaatgacgca gctccatcta
5101 atgatggtgc agcaggcctc gtgccagaga tcaacaatga ggtcatgccc cttgagcccg
5161 tggctggtgc atcgctggcg acaccagttg tcgggcaaca aaacataatt gatccctgga
5221 taagaaataa ttttgtacaa gcccctgcag gtgagtttac agtttctcct agaaattccc
5281 ctggtgaaat tttgcttgat ttggagttgg gaccagagtt gaacccctac ctcgctcatc
5341 ttgcccgtat gtataatggg cacgctggtg gcatggaagt gcaaattgtg ttggctggga
5401 acgcgttcac agctggcaag atcatatttg ctgccatccc tccaggtttc ccatatgaaa
5461 atttgtcacc ttcacaaatt acaatgtgcc cccatgttat aattgatgtt agacaattag
5521 agccagtctt attacctatg ccagatatca gaaataattt cttccattac aatcagggta
5581 atgatccaaa attaagactg gtagctatgc tctatactcc tttaagggct aataattctg
5641 gtgatgatgt gttcacagtt tcttgtaggg ttctcactaa accatcacct gattttgaat
5701 tcacattttt ggtcccccct acagttgaat ccaagaccaa gcaattcaca ttgcccatcc
5761 ttaaaatatc agagatgacc aactcaagat tcccagtgcc ggtggaaatg atgtacacag
5821 caaggaatga gaatcaagtt gtccagccac agaatggtag ggtcacactc gatggcgagc
5881 tattgggcac cacgcccttg ttggctgtca acatctgcaa attcaaggga gaggtcatag
5941 ctaagaatgg agatgtgaga tcctatagga tggacatgga aatcaccaac accgatggca
6001 ccccaattga ccccactgaa gacacacctg gtcccattgg atcacctgac tttcaaggta
6061 tactctttgg cgttgccagt cagcgcaaca aaaatgagca gaatcctgct accagagccc
6121 atgaagccaa catcaatact ggtggggacc aatatgcccc caaattggcc caagtgaaat
6181 tcttttcaga gtcccaggat ttcgaggtgc atcaacccac agttttcacc ccagttggtg
6241 tggcaggtga tacttcccac cctttcagac agtggatctt gcctcgatat ggtggacatc
6301 tcaccaacaa cactcacttg gctccagcag tggcccccct attcccaggt gagcagattc
6361 tgttctttag atcacaaata cctagttcag gcggccatga attgggttac atggactgcc
6421 ttgtcccaca ggaatgggtc caacacttct accaagaagc tgccacagct cagtctgagg
6481 tggcactcat aaggttcatt aaccctgaca ctggcagagt cctctttgag gccaagttac
6541 acaagcaagg ctttataact gtggctcaca ccggtgacaa cccaattgtc atgccaccaa
6601 atgggtactt cagatttgaa gcctgggtca atcagtttta cacactcgcc cccgtgggaa
6661 ctgggaatgg gcgtaggagg atccaataat ggccagtgct ttctttgcaa atttggcagg
6721 gggcgtcgcc tccaatggaa tcagttcact cataaatgct ggggctaatg ctattaacca
6781 aaaggttgag tttgactata ataaacaact ccaaaatgca tccttctccc acgataaaga
6841 aatgctccaa gcccaaattg aagccacaaa acgtttgcaa caagagatga ttgacataaa
6901 acaaggggtg ctgacggctg cgggattctc tcccacggat gccgcgaggg gttctgttgg
6961 cgcgccaatg acaaaattag ttgattggag tggtaccaga tattgggctc ctggtgccat
7021 gaggacaaca ggatattcag ggacttttac tcacttacct cctgtgcagt ctgcttcata
7081 tgttaataat cagaatagac agctttttaa agtagatcct tctccttctt cttcaagtgg
7141 ctcttcagtt tcttctgtta aaacacaatc aactgctctc tccggcactt caagggtggg
7201 ctcttcatct cagtcaaccc tgtcgaccag gccgagctca aggacatctg attgggtacg
7261 tagtcaaaat gaaaggttga gccccttcat gaatggagcg ttgcaaacag cgtatgtaac
7321 gccaccatct agtagggcat caagtgtcag cacagtctcg accgtgccga aagaggtttt
7381 ggactcctgg acgcctatgt ttaacactca caggcagccg ctcttcgccc acttgcgaaa
7441 gcgaggggag tcacagattt agtgaaaag
//