Typing tool
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Typing tool
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Complete norovirus genomes
| LC877027 | GII.7 | |
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| GII.P7 |
ORF1: 1..5077
ORF2: 5058..6680
ORF3: 6680..7453
LOCUS LC877027 7460 bp RNA linear VRL 31-MAY-2025
DEFINITION Norovirus GII.7 Hu/GII.7[P7]/TKY273/2024/JPN RNA, nearly complete
genome.
ACCESSION LC877027
VERSION LC877027.1
KEYWORDS .
SOURCE Norovirus GII.7
ORGANISM Norovirus GII.7
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7460)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2025) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 24
Genome Coverage :: 35.17x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7460
/organism="Norovirus GII.7"
/mol_type="genomic RNA"
/isolate="Hu/GII.7[P7]/TKY273/2024/JPN"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:490042"
/geo_loc_name="Japan"
/collection_date="2024-05"
/note="genotype: GII.7"
CDS <1..5077
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BGF32844.1"
/translation="DATAALGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKKMLGAVP
KGTKAPSSSQNCPTIKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQNEHE
NTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAISLA
TIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWL
NRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLIGKLK
PLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPEDLA
VELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKK
EEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKS
SSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAK
SIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCPV
TLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVK
RDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAG
LVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKSVKTLED
LKAALRDVKFNECEIIYKSSKYRVSSNGKGSVSVDKIADNASQTVNEVHSALLRLRQA
RARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETHEVNEPEKETAQGG
WEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYL
QDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGSDIRKR
RPDDFQPKGDLWADDTRSVDYNEKLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTH
VLPKGIKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSVLVK
RPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYK
RGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPKLS
TKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPPRPA
VLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGP
LADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCAR
AFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSIL
SAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAH
WILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTR
PDKTEGPLVITEDLTGLTFLRRSVARDPAGWFGKLDQDSILRQLYWTRGPNHENPYES
MVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRF
SDLSTWEGDRNLAPEGVNEDGVE"
CDS 5058..6680
/note="ORF2"
/codon_start=1
/product="VP1 protein"
/protein_id="BGF32845.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWILPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYTLAPVGTGNGRRRIQ"
CDS 6680..7453
/note="ORF3"
/codon_start=1
/product="VP2 protein"
/protein_id="BGF32846.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPVQSASYVNNQNRQLFKVDPSPSSSSGSSVSSVKTQ
STALSGTSRVGSSSQSTLSTRPSSRTSDWVRSQNERLSPFMNGALQTAYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRKRGESQI"
ORIGIN
1 cgacgctacc gctgcccttg gcagtcaaaa ctctgtcaat gacagtaaca acgccacccc
61 ttccaacaaa gaagaggttg gtgcattctc caacattaaa gttggattta agaaaatgct
121 gggcgccgta cccaagggta ccaaagcacc cagcagtagt caaaattgcc ccacaatcaa
181 gatcgggcct aaaacgctaa caatcccccc tgagccccca aacggtgagg atacagtaca
241 atttgatgca aagtcagaaa ctataattgg gctaccagac ttgacaacgg tgcaaaatga
301 acacgaaaac accccatata ctgtccctcc actaagtgag agggagcaca gaccggccac
361 tgaaccgctt cctggcacaa tattggagat gtgggatggt gagttctacc attactccgt
421 gtacgtcagc gatggcaaag ctctgggagt ccacaaacca ccggcggcca taagcctcgc
481 gacgatagag ctcaccccca tatcactcta ctggaggccc gtttacactc ccaactactt
541 agtctctcca gacacattaa agggcctcgc tggtgagaag ttcccctaca cggccttcag
601 taataactgt tacaatttct gttgttgggt gcttgagctc aacgacacgt ggcttaacag
661 aagatgcatt tctagaacta ccggtttctt caaaccatac cagtcttgga atagaaaacc
721 tctcccaact gttgatgatg gaaagatcaa aaaggtggcc aatgcgatcc tctgtgcact
781 cggttcgctg ttttcaaaac caattaaaga cctaataggt aaactcaagc cattgaatct
841 gctacacttg ctcgcgtcct gtgattggac gtttgcaggc atagtggaga cagtcatctt
901 aatggcggaa cttttcaatg tgttctggac cccaccagat gtctccaatt ttatagcttc
961 cctgataggt gattttgaat tgcaagggcc tgaagacctg gctgtagagc tcgtccccgt
1021 ggttatgggt ggcataggga tggttctcgg cttcactgct gagaagattg gccgcatgct
1081 gtcgtccgct gcatcaacgc tgcgggcatg caaagaccta gggaactacg cccttgacat
1141 actcaaattg gtcatgaaat ggttcttccc gaagaaggaa gagaaggctg agatggaaac
1201 cctgagggcg attgaagacg ccgtccttga tatggaagct atagggaata accatctcac
1261 gaccctcctc aaggacaaag acagcctcac agctttcatg aagaccttgg atctagaaga
1321 ggagaaggcg aggaagctgt ccaccaaatc atcctcaccg gacatagtcg gcaccatcaa
1381 cgccatatta gctaggatag ctgccgctag atcccttcta cataaggcca aagaagagat
1441 gttcagtagg atcagaccag tggtcgtcat gatctcaggc agacctggca ttggaaagac
1501 ccacatggct agacacttgg ccaagagcat cgccaatacc atgagtggtg atcagagagt
1561 cggactcgtt ccacgcaacg gtgtcgatca ttgggacgcc tacagaggag agagggtggt
1621 cttgtgggat gactacggta tggggagccc tgtcaaagat gccctgacac tgcaagagtt
1681 ggccgacaca tgtccagtca ctttaaattg tgacaggatt gagaataagg gaaagatgtt
1741 tgatagtgat gtcatcataa tcacgaccaa cttagtcaac cctgcacccc tcgactatgt
1801 gaacttcgag gcgtgttcta ggagagttga cttcctggtc tatgcagagt caccagaaat
1861 tgaaaaggtc aagagagact tccctggcca gcctgacatg tggaaggacc attttaaacc
1921 agacttttcc catatcaagt tgactctagc cccccagggt gggtttgaca aaaatggcaa
1981 caccccacac ggcaagggca ccatgcggtc cttaactcag gggtccctaa ctgcgagagt
2041 cgcaggcctt gtccatgaga ggaaggacga gttccaactc caaggaaacg acctccagac
2101 atacaacttt gacaccaata gagtctccgc attcagaaaa ttggctgcag ataacaagta
2161 tggcattatg gagacgatga gagttggtgc agcgctcaag agtgtgaaga ccttggaaga
2221 tctcaaagct gcattgaggg atgtgaaatt taatgagtgt gaaataattt acaagagctc
2281 taagtaccga gtctcttcca acggcaaagg ctcggtctct gttgacaaaa ttgcagacaa
2341 tgcttcccag actgtgaacg aggtgcattc agcacttctt agactcaggc aagcaagggc
2401 caggtattac atcagctgct tccaagatct cgtttacact ctcatacagg ttgccggggc
2461 atcattcgtc gtcagtagga tctctagaag gttctgctgg gaaaggtggg taaaaccgac
2521 cgagacccat gaagtgaatg agcccgaaaa ggaaacagcc cagggtggat gggagattga
2581 gcccaaggac acagaaccag aaggcaagaa gggcaagaac aagaaaggaa ggggcaagaa
2641 acacacagct ttttctagca aaggcctgag tgatgaagag tatgatgagt tcaagagaat
2701 cagggaagaa agaaacggaa agtactccat tgaggagtac ctgcaggacc gagaccgtta
2761 ttatgaagag gtggcggttg ctcgggcgac agaggaggac ttctgtgaag aggaagaagc
2821 caagataaga caaagaattt tccgcccgac taggaaacag aggaaggagg agaggggcgt
2881 gcttggcttg gtcactggct cagatatcag aaagaggaga cccgacgact tccaaccaaa
2941 gggcgattta tgggcagatg acaccagaag tgtagactac aatgagaagc ttgattttga
3001 agcacctcca agtgtttggt caagaatagt cccattgggc actggttggg ggttttgggt
3061 ttcatccaac cttctgatca caacaacaca cgtcctgccc aaagggatca aggaactctt
3121 tggagttgag atcaaacaaa tccaagttca taagtctgga gagttttgca ggtttaggtt
3181 tccaagaccc atcaggccag atgtcacagg actcgtgctg gaggaaggcg ccccagaggg
3241 cactgtctgt tctgtactcg taaaaagacc cacaggtgaa atgatccccc ttgcagtgag
3301 gatgggtacg cacgcatcca tgaaaataca aggcagaaca gttggtggcc agatggggat
3361 gctcctcacg ggagcaaacg cgaagaacat ggatctcggc actggtcctg gtgactgcgg
3421 ttgcccctac atctacaaac gtggcaacga tatagttgtc gcgggtgttc acaccgcagc
3481 agcccgtggg ggcaacactg tcatatgtgc cacccaaggg caagacgggg aagcggtcct
3541 tgagggaaat gaggaccttg gcacctactg tggtgcccca attctgggtc ctggcaaggc
3601 gcccaaactc agcacgaaga ccaaattctg gcgctcatca ccagacgcct tgccacctgg
3661 tacatacgaa cctgcttacc taggtggcaa agaccctaga gtggaaaaag gtccctccct
3721 gcagcaagtt atgagagacc agttgagacc cttcacagag cccaggggca aaccgcccag
3781 acctgcagtc ctggaggaag ccaaaaagac agttatgaat gttttagaac aaaccattga
3841 ccctgccaag ccatggtcct actcccaggc atgtgcctca cttgacaaaa ccacttctag
3901 tggtagtccc catcatgtca agaaaaatga ccactggaat ggggagtcct tcactggtcc
3961 acttgcagat caggcatcta aagctaacct catgtatgaa caggccaaac atgtgcagcc
4021 cgtgtacacg gcagcgctta aagatgagct tgttaagact gacaagatct acaagaagat
4081 aaagaagagg ctcctgtggg ggtcggacct tggcacaatg atcaggtgcg ccagggcttt
4141 tggcggtctc atggacagca tgaaggcaag ttgtatagct cttccttgca gggtagggat
4201 gaacatgaat gaagatggcc ccatcatatt tgacaaacac tccaagtaca ggtaccacta
4261 tgatgctgac tattctaggt gggactcaac ccaacagagg agcattctct ctgccgctat
4321 ggaagtaatg gtgcggtttt ctgccgaacc agaactggca caagtggttg cagaggatct
4381 tttagctcct agccagcttg acgttggtga ctttgtcatc tcagtccagg aaggtctacc
4441 atcaggagtc ccatgcacat cacaatggaa ttcaatagca cactggatcc tgactttgag
4501 tgcaatggca gaagtatcag gtctctcacc agatgtagtc caagctcact cctgtttttc
4561 attttatggg gacgatgaga tcgtcagtac tgacatcaat ctcgacccca tgaagttgac
4621 acagaaactc agggagtatg gtctggtccc cacccggcct gataaaactg aaggccccct
4681 cgtcataact gaagacctca ccggcctgac attcctccgt aggtcggttg ctcgggaccc
4741 agctggttgg tttgggaaac tggaccaaga ctcaattctc agacagctat actggacaag
4801 ggggcctaac catgagaacc cgtacgagag tatggttcct cattctcagc gggctacaca
4861 gctcatggcc cttcttggtg aggcctcgct gcatggtcca cagttttaca agaaagttag
4921 caagatggtc atcaatgaga ttaagagtgg tggtctggag ttttatgtgc ccagacaaga
4981 ggccatgttc aggtggatga gattctctga cctcagcaca tgggagggcg atcgcaatct
5041 tgctcccgaa ggtgtgaatg aagatggcgt cgaatgacgc agctccatct aatgatggtg
5101 cagcaggcct cgtgccagag atcaacaatg aggtcatgcc ccttgagccc gtggctggtg
5161 catcgctggc gacaccagtt gtcgggcaac aaaacataat tgatccctgg ataagaaata
5221 attttgtaca agcccctgca ggtgagttta cagtttctcc tagaaattcc cctggtgaaa
5281 ttttgcttga tttggagttg ggaccagagt tgaaccccta cctcgctcat cttgcccgta
5341 tgtataatgg gcacgctggt ggcatggaag tgcaaattgt gttggctggg aacgcgttca
5401 cagctggcaa gatcatattt gctgccatcc ctccaggttt cccatatgaa aatttgtcac
5461 cttcacaaat tacaatgtgc ccccatgtta taattgatgt tagacaatta gagccagtct
5521 tattacctat gccagatatc agaaataatt tcttccatta caatcagggt aatgatccaa
5581 aattaagact ggtagctatg ctctatactc ctttaagggc taataattct ggtgatgatg
5641 tgttcacagt ttcttgtagg gttctcacta aaccatcacc tgattttgaa ttcacatttt
5701 tggtcccccc tacagttgaa tccaagacca agcaattcac attgcccatc cttaaaatat
5761 cagagatgac caactcaaga ttcccagtgc cggtggaaat gatgtacaca gcaaggaatg
5821 agaatcaagt tgtccagcca cagaatggta gggtcacact cgatggcgag ctattgggca
5881 ccacgccctt gttggctgtc aacatctgca aattcaaggg agaggtcata gctaagaatg
5941 gagatgtgag atcctatagg atggacatgg aaatcaccaa caccgatggc accccaattg
6001 accccactga agacacacct ggtcccattg gatcacctga ctttcaaggt atactctttg
6061 gcgttgccag tcagcgcaac aaaaatgagc agaatcctgc taccagagcc catgaagcca
6121 acatcaatac tggtggggac caatatgccc ccaaattggc ccaagtgaaa ttcttttcag
6181 agtcccagga tttcgaggtg catcaaccca cagttttcac cccagttggt gtggcaggtg
6241 atacttccca ccctttcaga cagtggatct tgcctcgata tggtggacat ctcaccaaca
6301 acactcactt ggctccagca gtggcccccc tattcccagg tgagcagatt ctgttcttta
6361 gatcacaaat acctagttca ggcggccatg aattgggtta catggactgc cttgtcccac
6421 aggaatgggt ccaacacttc taccaagaag ctgccacagc tcagtctgag gtggcactca
6481 taaggttcat taaccctgac actggcagag tcctctttga ggccaagtta cacaagcaag
6541 gctttataac tgtggctcac accggtgaca acccaattgt catgccacca aatgggtact
6601 tcagatttga agcctgggtc aatcagtttt acacactcgc ccccgtggga actgggaatg
6661 ggcgtaggag gatccaataa tggccagtgc tttctttgca aatttggcag ggggcgtcgc
6721 ctccaatgga atcagttcac tcataaatgc tggggctaat gctattaacc aaaaggttga
6781 gtttgactat aataaacaac tccaaaatgc atccttctcc cacgataaag aaatgctcca
6841 agcccaaatt gaagccacaa aacgtttgca acaagagatg attgacataa aacaaggggt
6901 gctgacggct gcgggattct ctcccacgga tgccgcgagg ggttctgttg gcgcgccaat
6961 gacaaaatta gttgattgga gtggtaccag atattgggct cctggtgcca tgaggacaac
7021 aggatattca gggactttta ctcacttacc tcctgtgcag tctgcttcat atgttaataa
7081 tcagaataga cagcttttta aagtagatcc ttctccttct tcttcaagtg gctcttcagt
7141 ttcttctgtt aaaacacaat caactgctct ctccggcact tcaagggtgg gctcttcatc
7201 tcagtcaacc ctgtcgacca ggccgagctc aaggacatct gattgggtac gtagtcaaaa
7261 tgaaaggttg agccccttca tgaatggagc gttgcaaaca gcgtatgtaa cgccaccatc
7321 tagtagggca tcaagtgtca gcacagtctc gaccgtgccg aaagaggttt tggactcctg
7381 gacgcctatg tttaacactc acaggcagcc gctcttcgcc cacttgcgaa agcgagggga
7441 gtcacagatt tagtgaaaag
//