Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| LC877026 | GII.7 | |
|
|---|---|---|---|
| GII.P7 |
ORF1: 1..5077
ORF2: 5058..6680
ORF3: 6680..7453
LOCUS LC877026 7473 bp RNA linear VRL 31-MAY-2025
DEFINITION Norovirus GII.7 Hu/GII.7[P7]/TKY110/2024/JPN RNA, nearly complete
genome.
ACCESSION LC877026
VERSION LC877026.1
KEYWORDS .
SOURCE Norovirus GII.7
ORGANISM Norovirus GII.7
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7473)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2025) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 24
Genome Coverage :: 146.72x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7473
/organism="Norovirus GII.7"
/mol_type="genomic RNA"
/isolate="Hu/GII.7[P7]/TKY110/2024/JPN"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:490042"
/geo_loc_name="Japan"
/collection_date="2024-04"
/note="genotype: GII.7"
CDS <1..5077
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BGF32841.1"
/translation="DATAALGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKKMLGAVP
KGTKAPSSSQNCPTVKIGPKTLIIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQNEHE
NTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAISLA
TIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWL
NRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLK
PLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFQLQGPEDLA
VELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKK
EEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKS
SSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAK
SIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTCPV
TLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVK
RDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAG
LVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKSVKTLED
LKAALRDVKFNECEIIYKSSKYRVSSNGKGSVSVDKIADNASQTVNEVHSALLRLRQA
RARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETHEVNEPEKEAAQGG
WEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYL
QDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGSDIRKR
RPDDFQPKGDLWADDTRSVDYNEKLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTH
VLPKGIKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSVLVK
RPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYK
RGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPKLS
TKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPPRPA
VLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGP
LADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCAR
AFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSIL
SAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAH
WILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTR
PDKTEGPLVITEDLTGLTFLRRLIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYES
MVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRF
SDLSTWEGDRNLAPEGVNEDGVE"
CDS 5058..6680
/note="ORF2"
/codon_start=1
/product="VP1 protein"
/protein_id="BGF32842.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
CDS 6680..7453
/note="ORF3"
/codon_start=1
/product="VP2 protein"
/protein_id="BGF32843.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPMQSASYVNNQNRQLFKVDPSPSSSSGSSVSSVKTQ
STALSGTSRVDSSSQSTLSTRPSSRTSDWVRSQNERLSPFMNGALQTAYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESRV"
ORIGIN
1 cgacgctacc gctgcccttg gcagtcaaaa ctctgtcaat gacagtaaca acgccacccc
61 ttctaacaaa gaagaggttg gtgcattctc caacattaaa gttggattta agaaaatgct
121 gggcgccgta cccaaaggta ccaaagcgcc cagcagtagt caaaattgcc ccacagttaa
181 gatcgggcct aaaacgctaa taatcccccc tgagccacca aacggtgagg atacagtaca
241 atttgatgca aagtcagaaa ctataattgg gctaccagac ttgacaacgg tgcaaaacga
301 acacgaaaac accccatata ctgtccctcc actaagtgag agggagcaca gaccggccac
361 tgaaccgctt cctggcacaa tattggagat gtgggatggt gagttctacc attactccgt
421 gtacgtcagc gatggcaaag ctctgggagt ccacaaacca ccggcggcca taagcctcgc
481 gacgatagag ctcaccccca tatcactcta ctggaggccc gtttacactc ccaactactt
541 agtctctcca gacacattaa agggcctcgc tggtgagaag ttcccctaca cggccttcag
601 taataactgt tacaatttct gttgttgggt gcttgagctc aacgacacgt ggcttaacag
661 aagatgcatt tctagaacta ccggcttctt caaaccatac cagtcttgga atagaaaacc
721 tctcccaact gttgatgatg gaaagatcaa aaaggtggcc aatgcgatcc tctgtgcact
781 cggttcgctg ttttcaaaac caattaaaga cctactaggt aaactcaagc cattgaatct
841 gctacacttg ctcgcgtcct gtgattggac gtttgcaggc atagtggaga cagtcatctt
901 aatggcggaa ctttttaatg tgttctggac cccaccagat gtctccaatt ttatagcctc
961 cctgataggt gattttcaat tgcaagggcc tgaagacctg gctgtagagc tcgtccccgt
1021 ggtcatgggt ggcataggga tggttctcgg cttcactgct gagaagattg gccgcatgct
1081 gtcgtccgct gcatcaacac tgcgggcatg caaagaccta gggaactacg ccctggacat
1141 actcaaattg gtcatgaaat ggttcttccc gaagaaggaa gagaaggctg agatggaaac
1201 cctgagggcg attgaagacg ccgtccttga tatggaagct atagggaata accatctcac
1261 gaccctcctc aaggacaaag acagcctcac agctttcatg aagaccctgg atctagaaga
1321 ggagaaggcg aggaagctgt ccaccaaatc atcctcaccg gacatagtcg gtaccatcaa
1381 cgccatatta gctaggatag ctgccgctag atcccttcta cataaggcca aagaagagat
1441 gtttagcagg atcagaccag tggtcgtcat gatctcaggc agacctggca ttggaaagac
1501 ccatatggct agacacttgg ccaagagcat cgccaatacc atgagtggtg atcagagagt
1561 cggactcgtt ccacgcaacg gtgtcgatca ttgggacgcc tacagaggag agagggtggt
1621 cttgtgggat gactacggta tggggagtcc tgtcaaagat gccctgacac tgcaagagtt
1681 ggccgacaca tgtccagtca ctttaaattg tgacaggatt gagaataagg gaaagatgtt
1741 tgatagtgac gtcatcataa tcacgaccaa cttagtcaac cctgcacccc tcgactatgt
1801 gaacttcgag gcgtgttcta ggagagttga cttcctggtc tatgcagagt caccagaaat
1861 tgaaaaggtc aagagagact tccctggcca gcctgacatg tggaaggacc attttaaacc
1921 agacttttcc catattaagt tgactctagc cccccagggt gggtttgaca aaaatggcaa
1981 caccccacac ggcaagggca ccatgcggtc cttaactcag gggtccctaa ctgcgagagt
2041 cgcaggcctt gtccatgaga ggagggacga gttccaactc caaggaaatg acctccagac
2101 atacaacttt gacaccaata gagtctccgc attcagaaaa ctggctgcag ataacaagta
2161 tggcattatg gagacgatga gagttggtgc agcgctcaag agtgtgaaga ccttggaaga
2221 tctcaaagct gcattgaggg atgtgaaatt taatgagtgt gaaataattt acaagagctc
2281 taagtaccga gtctcttcca acggcaaagg ctcggtctct gttgacaaaa ttgcagataa
2341 tgcttcccag actgtgaacg aggtgcattc agcacttctt agactcaggc aagcaagggc
2401 caggtattac atcagctgct tccaagatct cgtttacact ctcatacagg ttgccggggc
2461 atcattcgtc gtcagtagga tctctagaag gttctgctgg gaaaggtggg taaaaccgac
2521 cgagacccat gaagtgaatg agcccgaaaa ggaggcagcc cagggtggat gggagattga
2581 gcccaaggac acagaaccag aaggcaagaa gggcaagaac aagaaaggaa ggggcaagaa
2641 acacacagct ttttctagca aaggcctgag tgatgaagag tatgatgagt tcaagagaat
2701 cagggaagaa agaaacggaa agtactccat tgaggagtac ctgcaggacc gagaccgtta
2761 ttatgaagag gtggcggttg ctcgggcgac agaggaggac ttctgtgaag aggaagaagc
2821 caagataaga caaagaattt tccgcccgac taggaaacag aggaaggagg aaaggggcgt
2881 gcttggcttg gtcactggct cagacatcag aaagaggaga cctgacgact tccaaccaaa
2941 gggcgaccta tgggcagatg acaccagaag tgtagattac aatgagaagc ttgattttga
3001 agcacctcca agtgtttggt caagaatagt cccattgggc actggttggg ggttttgggt
3061 ttcatccaac cttctgatca caacaacaca cgtcctgccc aaagggatca aggaactctt
3121 tggggttgag atcaaacaaa tccaagttca taagtctgga gagttttgca ggtttaggtt
3181 tccaagaccc atcaggccag atgtcacagg actcgtgctg gaggaaggcg ccccagaggg
3241 cactgtctgt tctgtgcttg taaaaagacc cacaggtgaa atgatccccc ttgcagtgag
3301 gatgggtacg cacgcatcca tgaaaataca gggcagaaca gttggtggcc agatggggat
3361 gctcctcacg ggagcaaacg cgaagaacat ggatctcggc actggtcctg gtgactgcgg
3421 ttgtccctac atctacaaac gtggcaacga tatagttgtc gcgggtgttc acaccgcagc
3481 agcccgtggg ggcaacactg tcatatgtgc cacccaaggg caagacgggg aagcggtcct
3541 tgagggaaat gaggaccttg gcacctactg tggtgcccca attctgggtc ctggcaaggc
3601 gcccaaactc agcacgaaga ccaaattctg gcgctcatca ccagacgcct tgccacctgg
3661 tacgtatgaa cctgcttacc taggtggcaa agaccctaga gtggaaaaag gtccctccct
3721 acagcaagtt atgagagacc agttgagacc cttcacagag cccaggggca aaccgcccag
3781 acctgcagtc ctagaggaag ccaaaaagac agtgatgaat gttttagaac aaaccattga
3841 ccctgccaag ccatggtctt actcccaggc atgtgcctca cttgacaaaa ccacttctag
3901 tggtagtccc catcatgtca agaaaaatga ccactggaat ggggagtctt tcactggtcc
3961 acttgcagat caggcatcta aagctaacct catgtatgaa caggccaaac atgtgcagcc
4021 cgtgtacacg gcagcgctta aagatgagct tgttaagact gacaagatct acaaaaagat
4081 aaagaagagg ctcctatggg ggtcggacct tggcacaatg atcaggtgcg ccagggcttt
4141 tggcggtctc atggacagca tgaaggcaag ttgtatagct cttccttgca gggtagggat
4201 gaacatgaat gaagatggcc ccatcatatt tgacaaacac tccaagtaca ggtaccacta
4261 tgatgctgac tattctaggt gggactcaac ccaacagagg agcattctct ctgccgctat
4321 ggaagtaatg gtgcggtttt ctgccgaacc agaactggca caagtggttg cagaggatct
4381 tctggctccc agccagcttg acgttggtga ctttgtcatc tcagtccagg aaggtctacc
4441 atcaggagtc ccatgcacat cacaatggaa ttcaatagca cactggatcc tgactttgag
4501 tgcaatggca gaagtgtcag gtctctcacc agatgtagtc caagctcact cctgtttttc
4561 attttacggg gacgatgaga tcgtcagtac tgacatcaat ctcgacccta tgaagttgac
4621 acagaaactc agggagtatg gtctggtccc cacccggcct gataaaactg aaggccccct
4681 cgtcataact gaagacctca ccggcttgac attcctccgt aggttgattg ctcgggaccc
4741 agctggttgg tttgggaaac tggaccaaga ctcaattctc agacagctat actggacaag
4801 ggggcctaac catgagaacc cgtacgagag tatggttcct cattctcagc gggctacaca
4861 gctcatggcc cttcttggtg aggcctcgct gcatggtcca cagttctaca agaaagttag
4921 caagatggtc atcaatgaga ttaagagtgg tggtctggag ttttatgtgc ccagacaaga
4981 ggccatgttc aggtggatga gattctctga cctcagcaca tgggagggcg atcgcaatct
5041 tgctcccgaa ggtgtgaatg aagatggcgt cgaatgacgc agctccatct aatgatggtg
5101 cagcaggcct cgtgccagag atcaacaatg aggtcatgcc ccttgagccc gtggctggtg
5161 catcgctggc gacaccagtt gtcgggcaac aaaacataat cgatccctgg ataagaaata
5221 attttgtaca agctcctgca ggtgagttca cagtttctcc tagaaattcc cctggtgaaa
5281 ttctgcttga tttggagttg ggaccagagt tgaaccccta tctcgctcat cttgcccgta
5341 tgtataatgg gcacgctggt ggcatggaag tgcaaattgt gttggctggg aacgcgttca
5401 cagctggcaa gatcatattt gctgccatcc ctccagggtt cccatatgaa aatttgtcac
5461 cttcacaaat tacaatgtgc ccccatgtta taattgatgt tagacaatta gagccagtct
5521 tattacctat gccagatatc agaaataatt tcttccatta caatcagggt aatgatccaa
5581 aattaagact ggtagctatg ctctatactc ctttaagggc taataattct ggtgatgatg
5641 tgttcacagt ttcttgtagg gttctcacta aaccatcacc tgattttgaa ttcacatttt
5701 tggtcccccc tacagttgaa tccaagacca agcaattcac attgcccatc cttaaaatat
5761 cagagatgac caactcaaga ttcccagtgc cggtggaaat gatgtacaca gcaaggaatg
5821 agaatcaagt tgtccagcca cagaatggta gggtcacact cgatggcgag ctattgggca
5881 ccacgccctt gttggctgtc aacatctgca aattcaaggg agaggtcata gctaagaatg
5941 gagatgtgag atcctatagg atggacatgg aaatcaccaa cactgatggc accccaattg
6001 accccactga agatacacct ggtcccattg gatcacctga ctttcaaggt atactctttg
6061 gcgttgccag tcagcgcaac aaaaatgagc agaatcctgc taccagagcc catgaagcca
6121 acatcaatac tggtggggac caatatgccc ccaaattggc ccaagtgaaa ttcttttcag
6181 agtcccagga tttcgaggtg caccaaccca cagttttcac cccagttggt gtggcaggtg
6241 atacttccca cccttttaga cagtgggtct tgcctcgata tggtggacat ctcaccaaca
6301 acactcactt ggctccagca gtggcccccc tattcccagg tgagcagatt ctgttcttta
6361 gatcacaaat acctagttca ggtggccatg aattgggtta catggactgc cttgtcccac
6421 aggaatgggt ccaacacttc taccaagaag ctgccacagc tcagtctgag gtggcactca
6481 taaggttcat taaccctgac actggcagag tcctctttga ggccaagcta cacaagcaag
6541 gctttataac tgtggctcac accggtgaca acccaattgt catgccacca aatgggtact
6601 tcagatttga agcctgggtc aatcagtttt actcactcgc ccccgtggga actgggaatg
6661 ggcgtaggag gatccaataa tggccagtgc tttctttgca aatttggcag ggggcgtcgc
6721 ctccaatgga atcagttcac tcataaatgc tggggctaat gctattaacc aaaaggttga
6781 gtttgattat aataaacaac tccaaaatgc atccttctcc cacgataaag aaatgctcca
6841 agcccaaatt gaagccacta aacgtttgca acaagagatg attgacataa aacaaggggt
6901 gctgacggct gcgggattct ctcccacgga tgccgcgagg ggttctgttg gcgcgccaat
6961 gacaaaatta gttgattgga gtggtaccag atattgggcc cctggtgcca tgaggacaac
7021 aggatattca ggaactttta ctcacttgcc tcctatgcag tctgcttcat atgttaataa
7081 tcagaataga cagcttttta aagtagatcc ttctccttct tcttcaagtg gctcttcagt
7141 ttcttctgtt aaaacacaat caactgctct ctccggcact tcaagggtgg actcttcatc
7201 tcagtcaacc ctgtcgacca ggccgagttc aaggacatct gattgggtac gtagccaaaa
7261 tgaaaggttg agccccttca tgaatggagc gttgcaaaca gcgtatgtaa cgccaccatc
7321 tagtagggca tcaagtgtca gcacagtctc gaccgtgccg aaagaggttt tggactcctg
7381 gacgcctatg tttaacactc acaggcagcc gctcttcgcc cacttgcgta ggcgagggga
7441 gtcacgggtt tagtgaaaag atcaattagg aaa
//