Typing tool
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Typing tool
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Complete norovirus genomes
| LC877022 | GII.7 | |
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| GII.P7 |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7454
LOCUS LC877022 7454 bp RNA linear VRL 31-MAY-2025
DEFINITION Norovirus GII.7 Hu/GII.7[P7]/TKY2043/2024/JPN RNA, nearly complete
genome.
ACCESSION LC877022
VERSION LC877022.1
KEYWORDS .
SOURCE Norovirus GII.7
ORGANISM Norovirus GII.7
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7454)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2025) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 24
Genome Coverage :: 84.09x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7454
/organism="Norovirus GII.7"
/mol_type="genomic RNA"
/isolate="Hu/GII.7[P7]/TKY2043/2024/JPN"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:490042"
/geo_loc_name="Japan"
/collection_date="2024-01"
/note="genotype: GII.7"
CDS <1..5084
/note="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BGF32829.1"
/translation="SNDATAALGSQSSVNDSNNATPSNKEEVGAFSNIKVGFKKMLGA
VPKGTKAPSSSQNCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQNE
HENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAAIS
LATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDT
WLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGK
LKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPED
LAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFP
KKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLST
KSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHL
AKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQELADTC
PVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEK
VKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARV
AGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKSVKTL
EDLKAALRDVKFNECEIIYKSSKYRVSSNGKGSVSVDKIADNASQTVNEVHSALLRLR
QARARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETHEVNEPEKETAQ
GGWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEE
YLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGSDIR
KRRPDDFQPKGNLWADDTRSVDYNEKLDFEAPPSVWSRIVPLGTGWGFWVSSNLLVTT
THVLPKGIKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSVL
VKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYI
YKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPK
LSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPPR
PAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNGESFT
GPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRC
ARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRS
ILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSI
AHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVP
TRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPY
ESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWM
RFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5065..6687
/note="ORF2"
/codon_start=1
/product="VP1 protein"
/protein_id="BGF32830.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLIPQEWVQHFYQEAAIAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
CDS 6687..>7454
/note="ORF3"
/codon_start=1
/product="VP2 protein"
/protein_id="BGF32831.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMVDIKQGVLMAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPMQSASYVNNQNRQLFKVDPSPFSSSGSSVSSVKTQ
STALSGTSRVDSSSQSTLSTRPSSRTSDWVRSQNERLSPFMNGALQTTYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQ"
ORIGIN
1 cgtctaacga cgctaccgct gcccttggca gccaaagctc tgtcaatgac agtaacaacg
61 ccaccccttc taacaaagaa gaggttggtg cattctccaa cattaaagtt ggatttaaga
121 aaatgctggg cgccgtaccc aaaggtacca aagcgcccag cagtagtcaa aattgcccca
181 cagttaagat cgggcctaaa acgctaacaa tcccccctga gcccccaaac ggtgaggata
241 cagtacaatt tgatgctaaa tcagaaacta taattgggct accagacttg acaacggtgc
301 aaaatgaaca cgaaaacacc ccatatactg tccctccact aagtgagagg gagcacagac
361 cggccactga accgcttcct ggcacaatat tggagatgtg ggatggtgag ttctaccatt
421 actccgtgta cgtcagcgat ggcaaagctc tgggagtcca caaaccaccg gcggccataa
481 gcctcgcgac gatagagctc acccccatat cactctactg gaggcccgtt tacactccca
541 actacttggt ctctccagac acattaaagg gcctcgctgg tgagaagttc ccctacacgg
601 ccttcagtaa taactgttac aatttctgtt gttgggtgct tgagctcaac gacacgtggc
661 ttaacagaag atgcatttct agaaccaccg gcttcttcaa accataccag tcctggaata
721 gaaaacctct cccaactgtt gatgatggaa agatcaaaaa ggtggccaat gcgatcctct
781 gtgcactcgg ttcgctgttt tcaaaaccaa ttaaagacct actaggtaaa ctcaagccat
841 tgaatctact acacttgctc gcgtcctgtg attggacgtt tgcaggcata gtggagacag
901 tcatcttgat ggcggaactt ttcaatgtat tctggacccc accagatgtc tccaatttta
961 tagcttccct gataggtgat tttgaactgc aagggcctga agacctggct gtagagctcg
1021 tccccgtggt catgggtggc atagggatgg ttctcggctt caccgctgag aagattggcc
1081 gcatgctgtc gtccgctgca tcaacactgc gggcatgcaa agacctaggg aactacgccc
1141 ttgacatact taaattggtc atgaaatggt tcttcccgaa gaaggaagag aaggctgaaa
1201 tggaaaccct gagggcgatt gaagacgccg tccttgatat ggaagctata gggaataacc
1261 atctcacgac cctcctcaag gacaaagaca gccttacagc tttcatgaag accttggatc
1321 tagaagagga gaaggcgagg aagctgtcca ccaaatcatc ctcaccggac atagtcggca
1381 ccattaacgc catattagct aggatagctg ccgctagatc cctcctacat aaggccaaag
1441 aagagatgtt cagtaggatc aggccagtgg tcgtcatgat ctcaggcaga cctggcattg
1501 gaaagaccca catggctaga cacttggcca agagcatcgc caataccatg agtggtgatc
1561 agagagttgg actcgtccca cgcaacggtg ttgatcattg ggacgcctac agaggagaga
1621 gagtggtctt gtgggatgac tacggtatgg ggagccctgt caaagatgcc ctgacactgc
1681 aagagttggc cgacacatgt ccagtcactt taaattgtga caggattgag aataagggaa
1741 agatgtttga tagcgatgtc atcataatca cgaccaacct agtcaaccct gcacccctcg
1801 actatgtgaa cttcgaggcg tgttctagga gagttgactt cctggtctat gcagagtcac
1861 cagaaattga aaaggtcaag agagacttcc ctggccagcc tgacatgtgg aaggaccatt
1921 ttaaaccaga cttttcccat atcaagttga ccctagcccc ccagggtggg tttgacaaaa
1981 atggcaacac cccacacggc aagggcacca tgcggtcctt aactcagggg tccctaactg
2041 cgagagtcgc aggccttgtc catgagagga gggacgagtt ccaactccaa ggaaacgacc
2101 tccagacata caactttgac accaatagag tctccgcatt cagaaaactg gctgcagata
2161 acaagtatgg cattatggag acgatgagag ttggtgcagc gctcaagagt gtgaagacct
2221 tggaagatct caaagctgca ttgagggatg tgaaatttaa tgagtgtgaa ataatttaca
2281 agagctctaa gtaccgagtc tcttccaacg gcaaaggctc ggtctctgtt gacaaaattg
2341 cagacaatgc ttcccagact gtgaatgagg tgcattcagc acttcttaga ctcaggcaag
2401 caagggccag gtattacatc agctgcttcc aagatctcgt ttacactctc atacaggttg
2461 ccggggcatc attcgtcgtc agtaggatct ctagaaggtt ctgctgggaa aggtgggtaa
2521 aaccgaccga gacccatgaa gtgaatgagc ccgaaaagga aacagcccag ggtggatggg
2581 agattgagcc caaggacaca gaaccagaag gcaagaaggg caagaacaag aaaggaaggg
2641 gcaagaaaca cacagctttt tctagcaaag gcctgagtga tgaagagtat gatgagttca
2701 agagaatcag ggaagaaaga aacggaaagt actccattga ggagtaccta caggatcgag
2761 accgctatta tgaagaggtg gcggttgctc gggcgacaga ggaggacttc tgtgaagagg
2821 aagaagccaa gataagacaa agaattttcc gcccgactag gaaacagaga aaggaggaga
2881 ggggcgtgct tggcttggtc actggctcag acatcagaaa gaggagaccc gacgacttcc
2941 aaccaaaggg caacctatgg gcagatgaca ccagaagtgt agactacaat gagaagcttg
3001 attttgaagc gcctccaagt gtttggtcaa gaatagtccc actgggcact ggttgggggt
3061 tttgggtttc atccaacctt ctggtcacaa caacacacgt cctgcccaaa gggatcaagg
3121 aactctttgg agttgagatc aaacaaatcc aagttcataa gtctggagag ttttgcaggt
3181 ttaggtttcc aagacccatc aggccagatg tcacaggact cgtgctggag gaaggcgccc
3241 cagagggcac tgtctgttct gtactcgtaa aaagacccac aggtgaaatg atcccccttg
3301 cagtaaggat gggtacgcac gcatccatga aaatacaggg cagaacagtt ggtggccaga
3361 tggggatgct cctcacggga gcaaacgcga agaacatgga tctcggcact ggtcctggtg
3421 actgcggttg cccctacatc tacaaacgtg gcaacgatat agttgtcgcg ggtgttcaca
3481 ccgcagcagc ccgtgggggc aacactgtca tatgtgccac ccaagggcaa gatggggaag
3541 cggtccttga gggaaatgag gaccttggca cctactgtgg tgccccaatt ctgggtcctg
3601 gcaaggcgcc caaactcagc acgaagacca aattctggcg ctcatcacca gacgccttgc
3661 cacctggtac atacgaacct gcttatctag gtggcaaaga ccctagagtg gaaaaaggtc
3721 cctccctgca gcaagtcatg agagaccagt tgagaccctt cacagagccc aggggcaaac
3781 cgcccagacc tgcagtcctg gaggaagcca aaaagacagt gatgaatgtt ttagaacaaa
3841 ccattgaccc tgccaagcca tggtcctact cccaggcatg tgcctcactt gacaaaacca
3901 cttctagtgg tagtccccac catgttaaga aaaatgacca ctggaatggg gagtccttca
3961 ctggtccact tgcagatcag gcatctaaag ctaacctcat gtatgaacag gccaaacatg
4021 tgcagcccgt gtacacggca gcgcttaaag atgagcttgt taagactgac aagatctaca
4081 agaagataaa gaagaggctc ctatgggggt cggaccttgg cacaatgatc aggtgcgcca
4141 gggcttttgg cggtctcatg gacagcatga aggcaagttg tatagctctt ccttgcaggg
4201 tagggatgaa catgaatgaa gatggcccca tcatatttga caaacactcc aagtacaggt
4261 accactatga tgctgactat tccaggtggg actcaaccca acagaggagc attctctctg
4321 ccgctatgga agtaatggtg cggttttctg ccgaaccaga actggcacaa gtggttgcag
4381 aagatctttt ggctcctagc cagcttgacg ttggtgactt tgtcatctca gtccaggaag
4441 gtctaccatc aggagtccca tgtacatcac aatggaattc aatagcacac tggatcctga
4501 ctttgagtgc aatggcagaa gtatcaggtc tctcaccaga tgtagtccaa gctcactcct
4561 gcttttcatt ttacggggac gatgagatcg tcagcactga catcaatctc gaccctatga
4621 agttgacaca gaaactcagg gagtatggtc tggtccccac ccggcctgat aaaactgaag
4681 gccccctcgt cataactgaa gacctcaccg gcctgacatt cctccgtagg tcgattgctc
4741 gggacccagc tggttggttt gggaaactgg accaagactc aattctcaga cagctatact
4801 ggacaagggg gcctaaccat gagaacccgt acgagagtat ggttcctcat tctcagcggg
4861 ctacacagct catggccctt cttggtgagg cctcgctgca tggtccacag ttttacaaga
4921 aagttagcaa gatggtcatc aatgagatta agagtggtgg tctggagttt tatgtgccca
4981 gacaagaggc catgttcagg tggatgagat tctctgacct cagcacatgg gagggcgatc
5041 gcaatcttgc tcccgaaggt gtgaatgaag atggcgtcga atgacgcagc tccatctaat
5101 gatggtgcag caggcctcgt gccagagatc aacaatgagg tcatgcccct tgagcccgtg
5161 gctggtgcat cgctggcgac accagttgtc gggcaacaaa acataattga tccctggata
5221 agaaataatt tcgtacaagc tcctgcaggt gagtttacag tttcccctag aaattcccct
5281 ggtgaaattt tgcttgattt ggagttggga ccagagttga acccctatct cgctcatctt
5341 gcccgtatgt ataatgggca cgctggtggc atggaagtgc aaattgtgtt ggctgggaac
5401 gcgttcacag ctggcaagat catatttgct gccatccctc cagggttccc atatgaaaat
5461 ttgtcacctt cacaaatcac aatgtgcccc catgttataa ttgatgttag acaattagag
5521 ccagtcttat tacctatgcc agatattaga aataatttct tccattacaa tcagggtaat
5581 gatccaaaat taagactggt agctatgctc tatactcctt taagggctaa caattctggt
5641 gatgatgtgt tcacagtttc ttgtagggtt ctcactaaac catcacctga ttttgaattc
5701 acatttttgg tcccccctac agttgaatcc aagaccaagc aattcacatt gcccatcctt
5761 aaaatatcag agatgactaa ctcaagattc ccagtgccgg tggaaatgat gtacacagca
5821 aggaatgaga atcaagttgt ccagccacag aatggtaggg tcacactcga tggcgagcta
5881 ttgggcacca cgcccttgtt ggctgtcaac atctgcaaat tcaagggaga ggtcatagct
5941 aagaatgggg atgtgagatc ctatagaatg gacatggaaa tcaccaacac tgatggcact
6001 ccaattgacc ccactgaaga tacacctggt cccattggat cacctgactt tcaaggtata
6061 ctctttggcg ttgccagtca gcgcaacaaa aatgagcaga atcctgctac cagagcccat
6121 gaagccaaca tcaatactgg tggggaccaa tatgccccca aattggccca agtgaaattc
6181 ttttcagagt cccaggattt cgaggtgcat cagcccacag ttttcacccc agttggcgtg
6241 gcaggtgata cttcccaccc tttcagacag tgggtcttgc ctcgatatgg tggacatctc
6301 accaacaaca ctcacttggc tccagcagtg gcccccctat tcccaggtga gcagattctg
6361 ttctttagat cacaaatacc tagttcaggc ggccatgaat tgggttacat ggactgcctt
6421 atcccacagg aatgggtcca acacttctac caagaagctg ccatagctca gtctgaggtg
6481 gcactcataa ggttcattaa ccctgacact ggcagagtcc tctttgaggc caagctacac
6541 aagcaaggct ttataactgt ggctcacacc ggtgacaacc caattgtcat gccaccaaat
6601 gggtacttca gatttgaagc ctgggtcaat cagttttact cactcgcccc cgtgggaact
6661 gggaatgggc gtaggaggat ccaataatgg ccagtgcttt ctttgcaaat ttggcagggg
6721 gcgtcgcctc caatggaatc agttcactca taaatgctgg ggctaatgct attaaccaaa
6781 aggttgagtt tgattataat aaacaactcc aaaatgcatc cttctcccac gataaagaaa
6841 tgctccaagc ccaaattgaa gccactaaac gtttgcaaca agagatggtt gacataaaac
6901 aaggggtgct gatggctgcg ggattctctc ccacggatgc cgcgaggggt tctgttggcg
6961 cgccaatgac aaaattagtt gattggagtg gtaccagata ttgggctcct ggtgccatga
7021 ggacaacagg atattcagga actttcactc acttgcctcc tatgcagtcc gcttcatatg
7081 ttaataatca gaatagacag ctttttaaag tagacccttc tcctttttct tcaagtggtt
7141 cttcagtttc ctctgttaaa acacaatcaa ctgctctctc cggcacttca agggtggact
7201 cttcatctca gtcaaccctg tcgaccaggc cgagctcaag gacatctgat tgggtacgta
7261 gccaaaatga aaggttgagc cccttcatga atggagcgtt gcaaacaacg tatgtaacgc
7321 caccatctag tagggcatca agtgtcagca cagtctcgac cgtgccgaaa gaggttttgg
7381 actcctggac gcctatgttt aacactcaca ggcagccgct cttcgcccac ttgcgtaggc
7441 gaggggagtc acag
//