Typing tool
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Typing tool
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Complete norovirus genomes
| LC868435 | GII.17 | |
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| GII.P17 |
ORF1: 1..5087
ORF2: 5068..6684
ORF3: 6684..7463
LOCUS LC868435 7491 bp RNA linear VRL 26-APR-2025
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY242453/2025/JP RNA, nearly complete
genome.
ACCESSION LC868435
VERSION LC868435.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7491)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (21-APR-2025) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
FEATURES Location/Qualifiers
source 1..7491
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY242453/2025/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan:Tokyo"
/collection_date="2025-03"
gene <1..5087
/gene="ORF1"
CDS <1..5087
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BFZ80383.1"
/translation="SVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPPGE
TKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTA
YSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIE
LTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRR
MVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPLN
IMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVEL
VPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEA
NELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSASP
DIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVA
STLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLN
CDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDF
PGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLLH
ERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQ
AIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARIR
YYVKSFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKPRD
EDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEI
RKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFIT
STHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSI
LIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPY
IYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAP
KLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPP
KPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESF
TGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIR
CARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQR
AVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNS
IAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLK
PTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDP
SETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRW
MRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5068..6684
/gene="ORF2"
CDS 5068..6684
/gene="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BFZ80384.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPYRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6684..7463
/gene="ORF3"
CDS 6684..7463
/gene="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BFZ80385.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGPSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cttccgttgc cgttgctggc aaaaacaaca acaacgacaa tgtaaaatct tcaagtgaca
61 gcttgttttc taacatgact gttactttta agaaagccct cggggcgcgg tctaagcaac
121 cgcccccggg agaaacaaaa caaacactaa gaccaccaag gccgccgaca ccggaattgg
181 tgaagaagat acccccaccc ccccccaatg gcgaggatga accaaaggta acgtataagg
241 tgggagaagg tgtgtctggg ctgcccgact taacaaccgt ggcacaacct gacgcacaga
301 acacagccta tagtgtcccc ccacttagcc agagagaggt cggcgaagct agagaaccgt
361 tgcctggctc cattctagaa atgtgggatg gtgagatcta ccactatggg ctgtatgttg
421 agcgggggca tgtgctggga gtgcacaaac cacctgctgc aataagcctt gcaaaaattg
481 agttaacacc gctgtctctc tactggagag tggtctacac tccccagtac ttgatagctc
541 cagagaccct caagaattta aatggagaga ctttcccata cacggccttt gacaacaact
601 gttatgcctt ctgttgttgg gttctggacc ttaacgactc ctggcttagc agaagaatgg
661 tccaaagaac aaccggattc ttcagaccgt atcaggactg gaacagaaaa cccttaccaa
721 ccatggatga accaaaaatc aagaaggccg cgaatgctgt tctgtgtgct ctctcctcac
781 tcttcactag gcccatcaaa gatgtcattg gaaagcttaa accactaaac attatgaaca
841 tactggcaac ttgtgattgg acttttgcgg gcatagtgga atccatgatc cttcttgctg
901 aactctttgg ggtgttctgg acgcccccag atgtgtctgc aataattgct cccttactcg
961 gtgactacga gatgcaaggc cccgaagacc tggccgtgga acttgtgccc gtggtaatgg
1021 gaggaatagg tttggtgtta ggattcacca aggaaaagat cggcaagatg ctttcatcag
1081 ctgcaaccac actcagggcc tgtaaggatc taggatctta tgggttggag atactcaaac
1141 tggtcatgaa gtggttcttc cccaagaagg aggaggccaa cgagttagcc atggtgaggg
1201 ccattgagga tgcagttctg gatttggagg caatagaaaa caaccacatg accactctcc
1261 ttaaggacaa agacgccctg gccacataca tgaggactct tgacttggaa gaagaaaaag
1321 caaggaaact atcttccaag tcggcgtcac ctgacatcgt gggcacagta aacgcattat
1381 tggcaagaat agcagccgcc aggtcactgg tccacaaggc taaggaggag ctctcgagca
1441 gacagagacc tgttgttgta atgatatcag gtaggccagg tataggaaag acccatctgg
1501 ccagagagct agccaagaag gttgcgtcaa cactgtcagg cgaccaaagg attggactga
1561 tacccagaaa tggcgtcgac cattgggacg cctacaaagg agagcgggtg gttctgtggg
1621 atgactatgg catgagcaac cctatacagg acgcactgag gctccaagaa ttggctgaca
1681 cctgtcctct gaccctaaat tgtgacagaa ttgaaaacaa aggaaaagtg ttcgacagtg
1741 acgccataat cataacgacc aaccttgcaa acccagcacc attggattat gtcaactttg
1801 aggcttgttc cagacgcata gacttcttgg tgtatgcaga cgcacctgac atcgagaagg
1861 ctaagcgtga ctttcctggc caaccagata tgtggaaaga ccattacaga ccagacttct
1921 cacacattaa acttcagctc gcaccacagg gaggctttga taagagtggc aacaccccac
1981 atggcaaagg cgtggttaag tctctgacga ttggctctct gatcgccagg gcttctggct
2041 tgctccatga gagaatggat gaattcgagc tccaaggccc caacttacca accttcaatt
2101 tcgaccgtaa caaagtcgcc gccttcagac aattggcagc tgaaaacaaa tacggtctta
2161 tggacacact gagggtcggc aaccaactga aaagtgtcaa aaccctagat gagctgaagc
2221 aggccataaa gaacatcacc atcaagaagt gccagatagt gtacaatgga tgcacctaca
2281 ccatggaatc tgatgggagg aacaaggttg tggttgaaaa ggttcaaaat gcaacagtcc
2341 aaaccaacaa tgaacttgca ggagcactcc accacctgag atctgcaaga ataaggtatt
2401 atgtcaaaag tttccaagaa gctatttact ctatactcca aattgctggt gcagccttcg
2461 tcaccacacg catcgtgagg cgcatgaaca tctcaaacct ctggtcgaag ccacccgtcg
2521 aagagggtga tgagcctgaa gacaaagggg ggtgccccaa gcccagggat gaagatgacc
2581 tcactattga ctccaaagac attaaagcag aaggtaagaa gggcaagaac aaatctggcc
2641 ggggcaagaa acacacagct ttctcatcca agggcctcag tgatgaagag tacgatgagt
2701 acaagagaat cagggaggag agaaatggca agtactcaat agaagaatac ctccaggata
2761 gggatagata ctatgaagag cttgccattg ctaaggccac tgaggaagac ttctgtgaag
2821 aggaggaaat caaaattcgc cagagaatct tccggcccac caggaagcag cggaaagagg
2881 aaagagccac gcttgggctc gtcacaggat cggaaatcag aaagaggaac ccagatgatt
2941 ttaagccaaa aggaaaattg tgggctgatg acaacaggag tgtggactac aacgagagga
3001 tagattttga ggctccccca agtgtttggt ctaggatagt caactttggt acaggatggg
3061 gattctgggt ctccccaagt ctctttataa cttcaacaca tgtcatacca aaaggaatta
3121 ctgaggcctt tggagttccc attaaccaaa ttcaaattca caaatctgga gagttttgcc
3181 gcttgcggtt tccaaaacca atcaggccag acgtgagtgg aatgatcttg gaagagggtg
3241 cccctgaagg cactgttgtt tccattctca tcaagaggac gacaggggaa ctgatgcctc
3301 tcgcagtcag gatgggaact catgccacaa tgaaaatcca aggtagaacg gtgggcggtc
3361 aaatgggcat gcttctcact ggctcaaacg ccaaaagcat ggacctaggc acaacaccag
3421 gtgactgtgg gtgcccatac atatacaaaa ggggcaatga cttcgtggtc attggggtgc
3481 acactgcagc agcccgtgga ggtaacacgg tcatatgtgc cacacagggg agtgaaggcg
3541 aagccaccct cgaaggaggt gacaacaagg gcacctattg tggagccccc atcttgggtc
3601 ctggcaacgc accaaaattg agcacaaaaa caaaattctg gagatcttct aacgcgccgc
3661 tcccgccagg cacctacgaa ccagcatacc ttggtggaaa agacccgcgt gtgaagggag
3721 gcccatctct acaacaggtt atgagagacc aactcaaacc ttttacagag cccagaggga
3781 agccaccaaa accaagtgtc ttagaatcag caaagaagac catcattaat gttctggaac
3841 aaaccattga cccccctgaa aagtggtcat atgcccaagc ttgtgcatcc ctcgacaaga
3901 caacctccag tggatacccg catcacgtcc ggaagaatga ctactggagt ggtgaatcct
3961 tcacggggaa acttgcagac caggcctcaa aagcaaatct catgtatgag gaaggtaagc
4021 acatgcaacc agtttacacc gcagcactca aagatgagct cgtgaaaact gacaaaattt
4081 atggcaagat caagaaaaga ctcttgtggg gctctgacct atccaccatg attcgatgcg
4141 ccagggcatt tggtggcctc atggacgagc tcaaagcaaa ttgtatcaca ctccctatca
4201 gagttggtat gaacatgaat gaagatggtc ccataatatt tgaaaagcac tccaggtaca
4261 ggtaccacta tgatgctgat tattcccgct gggattccac acaacagcgg gcagtgctgg
4321 aagcggcact tgaaatcatg gtgagatttt ctgctgagcc acagttggca caaatagtgg
4381 cagaggacct gctatcacca agtgtggttg atgtgggcga tttcaaaatt actattaatg
4441 aaggcctacc atctggcgtg ccttgcactt cacaatggaa ttctattgcc cactggttac
4501 tcaccctatg tgccctgtct gaagtgacag gattaggccc tgacatcata caagccaact
4561 ccatgtactc tttctatggt gatgatgaga ttgtgagcac agacataaaa ttagacccag
4621 aaaaattgac tgcaaaactc aaagaatatg gtctcaaacc cacccggcct gacaagactg
4681 aggggccact ggtaattagt gaggacttga atgggttgac tttcctccgc cgaacagtca
4741 cccgcgatcc agcgggttgg tttggaaagt tggaccaaaa ctccatcctc agacagctgt
4801 actggacaag gggacccaac catgaagacc ccagtgagac tatgatacca cacgcacaga
4861 gacctgtgca gctcatggca ttgctaggag aatcctccct acatggaccc tcattttaca
4921 gcaaggttag caaactggtt atatctgaac ttaaagaggg aggaatggat ttttatgtgc
4981 ccagacaaga gtcaatgttc aggtggatga ggttctcaga tctaagcaca tgggagggcg
5041 atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgaatgacgc cgctccatct
5101 aatgatggtg ctgctggtct cgtaccagag ggcaataacg agacccttcc cctagaacca
5161 gttgcgggcg cagccatagc cgcacccgtc actggccaaa ataatataat tgacccctgg
5221 attagaacaa attttgtgca agcaccaaat ggagagttca cagtgtcacc cagaaactct
5281 cctggagaaa ttttactaaa cctagagttg ggccctgatc tgaaccctta tttggctcat
5341 ttgtcaagga tgtataatgg atatgctggt ggagttgaag tccaggttct cctggcaggg
5401 aacgcgttca ctgccgggaa gatcctcttc gccgctgtcc cgccaaattt tccggtggaa
5461 ttcttgagcc cagcccagat tacaatgctc ccacatataa tagtagatgt taggactctt
5521 gaaccaatta tgatcccatt acctgatgtt aggaatacat tcttccacta taataatcag
5581 cccaacagcc gcatgagatt agtggctatg ctctacaccc cccttagatc taatggctca
5641 ggtgatgatg ttttcactgt ttcttgcagg gttttgacta ggcctactcc tgattttgag
5701 ttcacttatc tagtgccacc ctctgttgaa tctaagacta aacccttttc tttacccatt
5761 ctaacccttt ctgagctcac aaattcgagg ttcccggtcc ccatcgattc gcttttcacc
5821 gcccaaaata atgtgttgca ggtgcagtgt caaaatggca ggtgcacact tgacggtgag
5881 ctacaaggca caacccagtt gctcccatct ggcatctgtg cgttcagggg acgggtgaca
5941 gcagaaactg acaatcctga caagtggcac atgcaactgc aaaaccttaa tggcacaaca
6001 tatgacccaa ctgatgatgt gccagcccca ctgggtacac ctgacttcaa gggcgtcgtg
6061 tttgggatgg caagccaaag aaatgtgggt aacgacgcgc ccggctcaac caggtcccat
6121 gaggcggtga tttcaaccta cagccccaga tttgttccca aattaggctc tgtcaatttc
6181 aaaagcaatg acgatgattt ccaattgcag ccgacaagat tcacaccagt gggcattaat
6241 gatgatggca accaaccata cagacaatgg gaactaccag actattcagg agtgcttacc
6301 ttgaatatga accttgcccc ccctgttgcg ccaaatttcc ctggcgaaca attactattc
6361 ttcagatctt ctgtgccatg ttcaggaggc tacaaccaag gtattataga ttgccttatc
6421 ccccaagaat ggatccaaca cttctaccag gaatcagcac cttctcagtc agaagtggcc
6481 ctaatcaggt acgtcaaccc cgacacgggt cgtacactgt ttgaggcaaa attgcatagg
6541 tcaggctata tcactgtggc tcattctgga gactatcctc ttgttgttcc ggctaatgga
6601 tactttagat ttgactcttg ggtaaatcag ttttactcac tcgccccaat gggaactggg
6661 aatgggcgaa ggagggctca gtaatggctg gagctttcat tgcaggattg gcgggtgaca
6721 tgctcacgtc atccgtgggc tccctggtga acgcaggggc aaacgccatc aaccaaaaga
6781 tagactttga aaacaacaaa caactccagt ctgcttcctt tcaacatgat aaagagatgc
6841 tccaagcgca ggtgaacgca accaagcagc tgcaatctga gatgatagcc ctaaaacagg
6901 gggttttggc cgcaggcggc ttttccccca ctgatgcagc gaggggggcc atcggtgcac
6961 ccatgacaaa ggtgcttgac tggtctggca ctcgatactg ggctcccaat tccacaaaga
7021 caactggtta ttcggggcaa ttcacctctt cacctgtgca catgcccagc ccgagtgtcc
7081 cacaatcaaa acccgcaaag cccaagtctc taggtccttc ttcttcttct agtagtgttt
7141 acagtatgtc tacccaatta acttctctaa catctggctc ttctagtaat gcttcttctg
7201 cttctacaaa attgacaaat ttgagctccg gctcttctca aaacagaaca gcagagtggg
7261 tgaaccaaca gagaagtctc agccctttca tgagtggcgc actcaatatc tcgcatgtca
7321 cgccaccttc aagtagggcc tccagttctg ggacggtctc aaccgtgccc aaggaagttt
7381 tggactcctg gacatctgca tttaacacac acagacagcc gctcttcgca cacctcagag
7441 tgagggggga gtcacgtgtt tagtgaaaag aaataattgg ctataatatg a
//