Typing tool
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Typing tool
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Complete norovirus genomes
| LC868426 | GII.17 | |
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| GII.P17 |
ORF1: 1..5098
ORF2: 5079..6695
ORF3: 6695..7474
LOCUS LC868426 7495 bp RNA linear VRL 26-APR-2025
DEFINITION Norovirus GII Hu/GII.17[P17]/TKY241383/2024/JP RNA, nearly complete
genome.
ACCESSION LC868426
VERSION LC868426.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE The Detection of Norovirus in Tokyo
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7495)
AUTHORS Asakura,H., Yokota,S., Iwasaki,N., Miseki,N., Isogai,M.,
Konishi,N., Miyake,H., Sadamasu,K. and Chiba,T.
TITLE Direct Submission
JOURNAL Submitted (21-APR-2025) Contact:Hiroyuki Asakura Tokyo Metropolitan
Institute of Public Health, Department of Microbiology;
Hyakunincho3-24-1, Shinjyuku-ku, Tokyo 169-0073, Japan URL
:https://www.tmiph.metro.tokyo.lg.jp/
FEATURES Location/Qualifiers
source 1..7495
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17[P17]/TKY241383/2024/JP"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan:Tokyo"
/collection_date="2024-12"
gene <1..5098
/gene="ORF1"
CDS <1..5098
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BFZ80356.1"
/translation="SNDASVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQP
PPGETKQTLRPPRPPTPELVRKIPPPPPNGEDEPKVTYRVGEGVSGLPDLTTVTQPDA
QNTAYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL
AKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKL
KPLNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSK
SASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA
KKVASTLSGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA
KRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARAS
GLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD
ELKQAIKNITIKKCQIVYNGCTYTMESDGRDKVVVEKVQNATVQTNNELAGALHHLRS
ARIRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCP
KPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS
LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT
VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWS
GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRAVLEAALEIMVRFSAEPQLAQVVAEDLLSPSVVDVGDFKITINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN
HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5079..6695
/gene="ORF2"
CDS 5079..6695
/gene="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BFZ80357.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6695..7474
/gene="ORF3"
CDS 6695..7474
/gene="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BFZ80358.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gtctaacgac gcttccgttg ccgttgctgg caaaaacaac aacaacgaca atgtaaaatc
61 ttcaagtgac agcttgtttt ctaacatgac tgttactttt aagaaagccc tcggggcgcg
121 gtctaagcag ccgcccccgg gagaaacaaa acaaacacta agaccaccaa ggccgccgac
181 accggaattg gtgaggaaga tacccccacc cccccccaat ggcgaggatg aaccaaaggt
241 aacgtatagg gtgggagaag gtgtgtctgg gctgcccgac ttaacaaccg tgacacaacc
301 tgacgcacag aacacagcct atagtgtccc cccacttagc cagagagagg tcggcgaagc
361 tagagaaccg ttgcctggct ccattctgga aatgtgggat ggtgagatct accactatgg
421 gctgtatgtt gagcgggggc atgtgctggg agtgcacaaa ccacctgctg caataagcct
481 tgccaaaatt gagttaacac cgctgtctct ctactggaga gtggtctaca ctccccagta
541 cttgatagct ccagagaccc tcaagaattt aaatggagag actttcccat acacggcctt
601 tgacaacaac tgttatgcct tctgttgttg ggttctagac ctcaacgact cctggcttag
661 cagaagaatg gtccaaagaa caaccggatt cttcagaccg tatcaggact ggaacagaaa
721 acccttacca accatggatg aaccaaaaat caagaaggcc gcgaatgctg ttctgtgtgc
781 tctctcctca ctcttcacta ggcccatcaa agatgtcatt ggaaagctta aaccactaaa
841 cattatgaac atactggcaa cttgtgattg gacttttgcg ggcatagtgg aatccatgat
901 ccttcttgct gaactctttg gggtgttctg gacgccccca gatgtgtctg caataattgc
961 tcccttactc ggtgactacg agatgcaagg ccccgaagac ctggccgtgg aacttgtgcc
1021 cgtggtaatg ggaggaatag gtttggtgtt aggattcacc aaggaaaaga tcggcaagat
1081 gctttcatca gctgcaacca cactcagggc ctgtaaggat ctaggatctt atgggttgga
1141 gatactcaaa ctggtcatga agtggttctt ccccaagaag gaggaggcca acgagttagc
1201 catggtgagg gccattgagg atgcagttct ggatttggag gcaatagaaa acaaccatat
1261 gaccactctc cttaaggaca aagacgccct ggccacatac atgaggactc ttgacttgga
1321 agaagaaaaa gcaaggaaac tatcttccaa atcggcgtca cctgacatcg tgggcacagt
1381 aaacgcatta ttggcaagaa tagcagccgc caggtcactg gtccacaagg ctaaggagga
1441 gctctcgagc agacagagac ctgttgttgt aatgatatca ggtaggccag gtataggaaa
1501 gacccatctg gccagagagc tagccaagaa ggttgcgtca acactgtcag gcgaccaaag
1561 ggttggactg atacccagaa atggcgtcga ccattgggac gcctacaaag gagagcgggt
1621 ggttctgtgg gatgactatg gcatgagcaa ccctatacag gacgcactga ggctccaaga
1681 attggctgac acctgtcctc tgaccctaaa ttgtgacaga attgaaaaca aaggaaaagt
1741 gttcgacagt gacgccataa tcataacgac caaccttgca aacccagcac cactggatta
1801 tgtcaacttt gaggcttgtt ccagacgcat agacttcttg gtgtatgcag acgcacctga
1861 cattgagaag gctaagcgtg actttcctgg ccaaccagat atgtggaaag accattacag
1921 accagacttc tcacacatta aactccagct cgcaccacag ggaggctttg ataagagtgg
1981 caacacccca catggcaaag gcgtggttaa gtctctgacg attggctctc tgatcgccag
2041 ggcttctggc ttgctccatg agagaatgga tgaattcgag ctccaaggcc ccaacttacc
2101 aaccttcaat ttcgaccgta acaaagtcgc cgccttcaga caattggcag ctgaaaacaa
2161 atacggtctt atggacacac tgagggtcgg caaccaactg aaaagtgtca aaaccctgga
2221 tgagctgaag caggccataa agaacatcac catcaagaag tgccagatag tgtacaatgg
2281 atgtacctac accatggaat ctgatgggag ggacaaggtt gtggttgaaa aggttcaaaa
2341 tgcaacagtc caaaccaaca atgagcttgc aggagcactc caccacctga gatctgcaag
2401 aataaggtat tatgtcaaat gtttccaaga agctatttac tctatactcc aaattgctgg
2461 tgcagccttc gtcaccacac gcatcgtgag gcgcatgaac atctcaaacc tctggtcgaa
2521 gccacccgtc gaagagggtg atgagcctga agacaaaggg gggtgcccca agcccaggga
2581 tgaagatgac ctcactattg actccaaaga cattaaagca gaaggtaaga aaggcaagaa
2641 caaatctggc cggggcaaga aacacacagc tttctcatcc aagggcctca gtgatgaaga
2701 gtacgatgag tacaagagaa tcagggagga gagaaatggc aagtactcaa tagaagagta
2761 ccttcaggat agggatagat actatgaaga gcttgccatt gctaaggcca ctgaggaaga
2821 cttctgtgaa gaggaggaaa tcaaaattcg ccagagaatc ttccggccca ccaggaagca
2881 gcggaaagag gaaagagcca cgcttgggct cgtcacagga tcggaaatca gaaagaggaa
2941 cccagatgac tttaagccaa aaggaaaatt gtgggctgat gacaacagga gtgtggacta
3001 caatgagagg atagattttg aggctccccc aagtgtttgg tctaggatag tcaactttgg
3061 tacaggatgg ggattctggg tctccccaag tctctttata acttcaacac atgtcatacc
3121 aaaaggaatt actgaggcct ttggagttcc cattaaccaa attcaaattc acaaatctgg
3181 agagttttgc cgcttgcggt ttccaaaacc aatcaggcca gacgtgagtg gaatgatctt
3241 ggaagagggt gcccctgaag gcactgttgt ttccattctc atcaagagga cgacagggga
3301 actgatgcct ctcgcagtca gaatgggaac tcatgccaca atgaaaatcc aaggtagaac
3361 ggtgggcggt caaatgggca tgcttctcac tggctcaaac gccaaaagca tggacctagg
3421 cacaacacca ggtgactgtg ggtgcccata catatacaaa aggggcaatg acttcgtggt
3481 cattggggtg cacactgcag cagcccgtgg aggtaacaca gtcatatgtg ccacacaggg
3541 gagtgaaggc gaagccaccc tcgaaggagg tgacaacaag ggcacctatt gtggagcccc
3601 catcttgggt cctggcaacg caccaaaatt gagcacaaaa acaaaattct ggagatcttc
3661 taacgcgccg cttccgccag gtacctacga accagcatac cttggtggaa aagacccgcg
3721 tgtgaaggga ggcccatctc tacaacaggt tatgagagac caactcaaac cttttacaga
3781 gcccagaggg aagccaccaa aaccaagtgt cctagaatca gcaaagaaga ccatcattaa
3841 tgttctggaa caaaccattg acccccctga aaagtggtca tatgcccaag cttgtgcatc
3901 tctcgacaag acaacctcca gtggataccc gcatcacgtc cggaagaatg actactggag
3961 tggtgaatcc ttcacgggga aacttgcaga ccaggcctca aaagcaaatc tcatgtatga
4021 ggaaggtaag cacatgcaac cagtttacac cgcagcactc aaagacgagc tcgtgaaaac
4081 tgacaaaatt tatggcaaga tcaagaaaag actcctgtgg ggctctgacc tatccaccat
4141 gattcgatgc gccagggcat ttggtggcct catggatgag ctcaaagcaa attgtatcac
4201 actccctatc agagttggta tgaacatgaa tgaagatggt cccataatat ttgaaaagca
4261 ctccaggtac aggtaccact atgatgctga ttattcccgc tgggattcca cacaacagcg
4321 ggcagtgctg gaagcggcac ttgaaatcat ggtgagattt tctgctgagc cacagttggc
4381 acaagtagtg gcagaggacc tgctatcacc aagtgtggtt gatgtgggcg atttcaaaat
4441 tactattaat gaaggcctac cgtctggcgt gccttgcact tcacaatgga attctattgc
4501 ccactggtta ctcaccctat gtgccctgtc tgaagtgaca ggactaggcc ctgacatcat
4561 acaagccaac tccatgtact ctttctatgg tgatgatgag attgtgagca cagacataaa
4621 attagaccca gagaaattga ctgcaaaact caaagaatat ggtcttaaac ccacccggcc
4681 tgacaagact gaggggccac tggtaattag tgaggacctg aatgggttga ctttcctccg
4741 ccgaacagtc acccgcgatc cagcgggttg gtttggaaag ttggaccaaa actccatcct
4801 cagacagctg tactggacaa ggggacccaa ccatgaagac cccagtgaga ctatgatacc
4861 acacgcacag agacctgtgc agctcatggc attactaggg gaatcctccc tacatggacc
4921 ctcattttac agcaaggtta gcaaactggt tatatctgaa cttaaagagg gaggaatgga
4981 tttttatgtg cccagacaag agtcaatgtt caggtggatg aggttctcag atctaagcac
5041 atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg
5101 ccgctccatc taatgatggt gctgctggtc tcgtaccaga gggcaataac gagacccttc
5161 ccctagaacc agttgcgggc gcagccatag ccgcacccgt cactggccaa aataatataa
5221 ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc acagtgtcac
5281 ccagaaactc tcctggagaa attttactaa acctagagtt gggccctgat ctgaaccctt
5341 atttggctca tttgtcaagg atgtataatg gatatgctgg tggagttgaa gtccaggttc
5401 tcctggcagg gaacgcgttc actgccggga agatcctctt cgccgctgtc ccgccaaatt
5461 ttccggtgga attcttaagc ccagcccaga ttacaatgct cccacatata atagtagatg
5521 ttaggactct tgaaccaatt atgatcccat tacctgatgt taggaataca ttcttccact
5581 ataataatca gcccaacagc cgcatgagat tagtggctat gctctacacc ccccttagat
5641 ctaatggctc aggtgatgat gttttcactg tttcttgcag ggttttgact aggcctactc
5701 ctgattttga gttcacttat ctagtgccac cctctgttga atctaagact aaaccctttt
5761 ctttacccat tctaaccctt tctgagctca cgaattcgag gttcccggtc cccattgatt
5821 cgcttttcac cgcccaaaat aatgtgttgc aggtgcagtg tcaaaatggc aggtgcacac
5881 ttgacggtga gctacaaggc acaacccagt tgctcccatc tggcatctgt gcgttcaggg
5941 gacgggtgac agcagaaact gacaatcctg acaagtggca catgcaactg caaaacctta
6001 atggcacaac atatgaccca actgatgatg tgccagcccc actgggtaca cctgacttca
6061 agggcgtcgt gtttgggatg gcaagccaaa gaaatgtggg taacgacgcg cccggctcga
6121 ccaggtccca tgaggcggtg atttcaacct acagccccag atttgttcct aaattaggct
6181 ctgtcaattt caaaagcaat gacgatgatt tccaattgca gccaacaaga ttcacaccag
6241 tgggcattaa tgatgatggc aaccaaccat tcagacaatg ggaactacca gattattcag
6301 gagtgcttac cttgaatatg aaccttgccc cccctgttgc tccaaatttc cctggcgagc
6361 aattactatt cttcagatct tctgtgccat gttcaggggg ttacaaccaa ggtattatag
6421 attgccttat cccccaagaa tggatccaac acttctacca ggaatcagca ccttctcagt
6481 cagaagtggc cctaatcagg tacgtcaacc ccgacacggg tcgtacactg tttgaggcaa
6541 aattgcatag gtcaggctat atcactgtgg ctcattctgg agactaccct cttgttgttc
6601 cggctaatgg atactttaga tttgactctt gggtaaatca gttttactca ctcgccccaa
6661 tgggaactgg gaatgggcga aggagggctc agtaatggct ggagctttca ttgcaggatt
6721 ggcgggtgac atgctcacgt catccgtggg ctccctggtg aacgcagggg caaacgccat
6781 caaccaaaag atagactttg aaaacaacaa acaactccag tctgcttcct ttcaacatga
6841 caaagagatg ctccaagcgc aggtgaacgc aaccaagcag ctgcaatctg agatgatagc
6901 cctaaaacag ggggttttgg ccgcaggcgg cttttccccc actgatgcag cgaggggggc
6961 catcggtgca cccatgacaa aggtgcttga ctggtctggc actcgatact gggctcctaa
7021 ttccacaaag acaactggtt attcggggca attcacctct tcacccgtgc acatgcccag
7081 cccgagtgtc ccacaatcaa aacccgcaaa gcccaagtct ctaggttctt cttcttcttc
7141 tagtagtgtt tacagtatgt ctacccaatt aacttctcta acatctggct cttctagtaa
7201 tgcttcttct gcttctacaa aattgacaaa tttgagctcc ggctcttctc aaaacagaac
7261 agcagagtgg gtgaaccaac agagaagtct cagccctttc atgagtggcg cactcaatat
7321 ctcgcatgtc acgccacctt caagtagggc ctccagttct gggacggtct caaccgtgcc
7381 caaggaagtt ttggactcct ggacatctgc attcaacaca cacagacagc cgctcttcgc
7441 acacctcaga gtgagggggg agtcacgtgt ttagtgaaaa gaaataattg gctat
//