Typing tool
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Typing tool
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Complete norovirus genomes
| LC848165 | GII.17 | |
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| GII.P17 |
ORF1: 1..5108
ORF2: 5089..6711
ORF3: 6711..7484
LOCUS LC848165 7545 bp RNA linear VRL 17-OCT-2024
DEFINITION Norovirus GII.17 2022/TH_HC41_2_25_Aug1 RNA, draft genome.
ACCESSION LC848165
VERSION LC848165.1
KEYWORDS .
SOURCE Norovirus GII.17
ORGANISM Norovirus GII.17
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Boonyos,P., Phoonsangwalthong,P., Uppchai,S., Tacharoenmuang,R.,
Towayunanta,W., Chuntrakool,K., Oku,K., Motooka,D., Kotaki,T.,
Mekada,E., Tatsumi,M., Kobayashi,T. and Mizushima,H.
TITLE Characteristics of asymptomatic norovirus infection revealed by
surveys of community residents
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7545)
AUTHORS Mizushima,H., Boonyos,P., Phoonsangwalthong,P., Motooka,D. and
Oku,K.
TITLE Direct Submission
JOURNAL Submitted (15-OCT-2024) Contact:Hiroto Mizushima Thailand-Japan
Research Collaboration Center on Emerging and Re-emerging
Infections, Section of Viral Infections; Tiwanon Road, Muang,
Nonthaburi 11000, Thailand URL
:http://www.biken.osaka-u.ac.jp/en/laboratories/detail/28
COMMENT ##Assembly-Data-START##
Assembly Method :: MEGAHIT v. 1.2.9
Sequencing Technology :: DNBSEQ-G400RS
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7545
/organism="Norovirus GII.17"
/mol_type="genomic RNA"
/strain="2022/TH_HC41_2_25_Aug1"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:552592"
/geo_loc_name="Thailand: Bangkok"
/collection_date="2022-08-11"
/note="genotype: GII.17[P17]"
gene <1..5108
/gene="ORF1"
CDS <1..5108
/gene="ORF1"
/codon_start=3
/product="non-structural polyporotein precursor"
/protein_id="BFT93974.1"
/translation="KMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARS
KQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQ
PDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAA
ISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDII
GKLRPLNILNILAACDWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDCLATYMRTLDLEEEKARKL
STKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMLSGRPGIGKTHLAR
ELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELAD
TCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDI
EKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIA
RASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVK
TLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHH
LRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRG
GCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREER
NGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLG
LVTGTEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWV
SPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAP
EGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTP
GDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPI
LGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFT
EPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKND
YWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGS
DLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSR
WDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVP
CTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAK
LKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTR
GPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPR
QESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..998
/gene="ORF1"
/product="p48"
mat_peptide 999..2096
/gene="ORF1"
/product="NTPase"
mat_peptide 2097..2633
/gene="ORF1"
/product="p22"
mat_peptide 2634..3032
/gene="ORF1"
/product="VPg"
mat_peptide 3033..3575
/gene="ORF1"
/product="Pro"
mat_peptide 3576..5105
/gene="ORF1"
/product="RdRp"
gene 5089..6711
/gene="ORF2"
CDS 5089..6711
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BFT93975.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNFRISNNDDFQFQPTKFTPVGIN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6711..7484
/gene="ORF3"
CDS 6711..7484
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BFT93976.1"
/translation="MAGAFIAGLAGDLLTSSVGSLVNAGANAINQKVDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHSPNAPQSKPAKPRSPVPSSSSSSVYSMYTQSTHL
TSGPSSNASSASTKLTNLSSGSSQNRTAEWVNQQRNLSPFMSGALNISHVTPPSSRAS
SSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 tgaagatggc gtctaacgac gcttccgctg ccgttgctgg caaaaacaac aacaacgaca
61 aggaaaaatc ttcaagtgac agcttgtttg ctaatatgtc tgtcactttt aagaaagccc
121 tcggggcgcg gtctaaacaa ccgcccccgg gagaaacaaa acaaatacaa aaaccaccaa
181 ggccaccgac accggaattg gtgaagagaa tacctccacc cccacccaat ggcgaggatg
241 aaccagggat agtgtacaag gtgggagagg gtgtgtctgg gctgcccgac ctaacaactg
301 tggcacaacc tgacgcacaa aacacagctt acagtgttcc cccacttagc cagagagaag
361 tcggcgaagc taaagaaccg ctgcctggct ccattttgga aatgtgggat ggtgagatct
421 accactatgg gctgtatgtt gagcgggggc atgtgctcgg agtacacaaa ccacctgctg
481 caataagcct tgccaaaatt gaaataacac cgctgtctct ctactggaga gtggtctaca
541 ctccccagta tttgatagac ccaggaactc ttaagaactt gagtggagag acttttccat
601 acacggcctt tgacaataac tgctatgcct tctgttgttg ggtcctagac ctcaacgact
661 cctggcttag caggagaatg atccaaagaa caactggatt tttcaaacct tatcaggatt
721 ggaacagaaa acccttacca accatggatg aaccgaaaat caagaaggct gcgaatgctg
781 tcctatgcgc tctctcctca ctcttcacta gacccattaa ggacatcatt gggaagctta
841 gaccactgaa cattcttaat atactggcag cctgcgattg gacttttgca ggcgtagtgg
901 aatccttgat ccttcttgct gaactctttg gggtgttctg gacaccccca gatgtgtctg
961 cgatgattgc tcccttactc ggtgactacg agatgcaagg ccccgaagac ctggctgtgg
1021 aacttgtgcc cgtggtgatg ggaggaatag gtttggtgtt aggattcacc aaagaaaaga
1081 tcggcaagat gctttcatca gctgcgacca cacttagggc ctgcaaggat ttaggatctt
1141 atggattgga gatactcaaa ttggtcatga agtggttctt ccccaagaag gaggaggcta
1201 acgaactagc catggtgagg gccattgagg atgcagtcct ggatttggag gcaatagaaa
1261 acaatcacat gaccaccctt ctcaaggata aagactgcct ggccacatac atgagaactc
1321 ttgacttgga agaagagaaa gcaaggaaac tgtcgaccaa atcggcgtca cctgacattg
1381 tgggtacaat aaacgcactg ctggctagga tagcagccgc caggtcactg gtccacaagg
1441 ctaaggagga gctctcgagc agacagagac ctgttgttgt aatgttatca ggtagaccag
1501 gtataggaaa gacccatctg gccagagagc tagccaagaa agtcgcgtca acactgtcag
1561 gcgaccaaag aatcggactg gtacctagga atggtgtcga ccattgggac gcctacaagg
1621 gagaaagggt ggtcctgtgg gatgattatg gtatgagcaa ccctatacag gacgcactga
1681 ggctccaaga attggctgac acctgtcctc tgaccctaaa ttgtgatagg attgaaaaca
1741 aaggaaaagt gttcgacagt gacgccataa ttataacaac caaccttgca aacccagcac
1801 cactagacta tgtcaacttt gaggcctgct ctagacgcat agacttcttg gtgtatgcag
1861 acgcacctga cattgagaag gctaagcgtg acttccctgg ccaaccagat atgtggaaag
1921 accatttcag accagacttc tcacacatta aacttcagct ggcaccacag ggaggttttg
1981 acaaaaatgg caacacccca catggcaaag gtgtggtaaa gtccctgacg attggttccc
2041 tgatcgccag ggcctccggc ttgctccacg agagaatgga tgagttcgag ctccaaggct
2101 ctgacctgcc aaccttcaat tttgaccgca ataaagtcgc tgccttcaga caattggcag
2161 ctgaaaacaa atatggtctt atggacacat tgagggttgg caaccaactg aaaagtgtta
2221 agaccctgga tgagctgaag caggccataa agaacatcag tatcaagaag tgtcaaatag
2281 tgtataatgg gtgcacctat actatggaat ctgatgggag gggcaaggtt gtggttgaaa
2341 aggtacaaaa cgcaacagtt caaaccaaca atgaacttgt tggggcactc caccacctga
2401 gatctgcaag gataagatac tatgttaaat gtttccaaga agccatttac tctctactcc
2461 aaattgctgg cgcagccttt gtcacctcac gcatcgtgag gcgcatgaac atatcaaacc
2521 tctggtcgaa gccacccatt gaggagggtg atgagcctga agacagagga ggatgcccca
2581 agcccaggga tgaagatgac ctcactattg actctagaga cattaaagtg gaagggaaga
2641 agggcaagaa caagtctggc cggggcaaga aacacacagc cttctcttcc aagggcctca
2701 gtgatgaaga gtacgatgag tacaagagaa tcagagagga gaggaatggc aaatactcaa
2761 tagaggaata cctccaagac agggacaggt actatgaaga gcttgccatt gctaaggcca
2821 ctgaggaaga cttctgtgaa gaggaggaga tcaaaatccg ccagagaatc ttccgaccca
2881 ccaggaagca acggaaagag gaaagggcca cgctcgggct tgtcacagga acggaaatca
2941 gaaagaggaa tccagatgat tttaaaccaa aaggaaaatt gtgggctgat gacaacagga
3001 gcgtggatta caatgagagg atagattttg aggctccccc gagtgtttgg tctaggatag
3061 tcaactttgg cacaggctgg ggattctggg tctctccaag tctctttata acttcaacac
3121 acgtcatacc aaaaggaatc actgaggcct ttggagtgcc cataaaccaa atccaaatcc
3181 acaaatctgg agaattttgc cgcttgcggt ttccaaagcc aattagacca gacgtgagtg
3241 ggatgatctt ggaagagggc gcccctgaag gcactgttgt gtctattctc atcaaaagga
3301 caacagggga gctgatgcct cttgcagtca gaatggggac tcatgccaca atgaaaatcc
3361 aaggtagaac ggtgggtggt cagatgggca tgcttctcac tggctcaaat gctaaaggca
3421 tggatctagg cacaacgcca ggtgactgcg gatgtccata catatacaaa aggggcaatg
3481 accttgtggt cattggggtg cacactgcag cagctcgtgg aggcaacacg gtcatatgtg
3541 ccacacaggg aagtgagggt gaagccactc ttgaaggaga tgacaacaag ggtacctatt
3601 gtggagcccc cattttggga cctggcaatg caccaaaatt gagcacaaag acaaaattct
3661 ggagatcctc taacgcaccg cttcccccag gtacttatga accagcatac cttggtggga
3721 gagacccgcg cgtgaaggga ggcccatctc tgcaacaagt tatgagagat caactcaaac
3781 cttttacaga gcccagaggg aagccaccaa acccaaatgt cttagagtca gcaaagaaga
3841 ctatcatcaa tgttctggaa cagaccattg accctcctca aaagtggtca tatgcccaag
3901 cttgtgcatc cctcgacaag acaacctcca gtggataccc gcaccacgtt cggaagaatg
3961 actactggag tggtgaatcc ttcacaggaa aacttgcaga tcaggcttca aaagcaaatc
4021 tcatgtatga ggaaggcaag cacatgcaac cagtttacac cgcagcactc aaagacgagc
4081 tcgtgaaaac tgacaaaatt tatggcaaaa tcaagaaaag actcctatgg ggctctgacc
4141 tctccacaat gattcgatgc gccagagcat ttggtggtct catggatgaa ttcaaagcaa
4201 attgtattac actccctatc agagttggta tgaatatgaa tgaagatggt cccataatat
4261 ttgagaaaca ctccaggtac aggtaccact atgatgctga ttactcccgc tgggactcca
4321 cacaacagcg ggcagtgctg gaagcggcac ttgaaatcat ggtgagattt tctgctgagc
4381 cacagctggc acaaatagtg gcagaggacc tgctgtcacc aagtgtggtt gatgtgggcg
4441 atttcaaaat cgctatcaat gaaggcctac catctggcgt gccttgcacc tcacaatgga
4501 attctattgc ccactggtta cttaccttgt gtgccctttc tgaagtgacg ggattaggtc
4561 ctgacatcat acaagctaac tccatgtact ctttctatgg tgatgatgag attgtgagca
4621 cagacataaa attggaccca gagaaattga ccgcaaagct caaagaatat ggccttaaac
4681 ccactcggcc cgacaaaact gaggggccgt tggtgattag tgaggacctg aatgggttaa
4741 ctttccttcg ccggacagtc acccgtgatc cagcaggttg gtttggaaag ttggaccaaa
4801 actccatcct caggcagttg tactggacaa gaggacccaa ccatgaagac cccagtgaga
4861 ccatgatacc acacgcacaa agacctgtgc agctcatggc actactagga gagtcctctc
4921 tacatggacc ctcattttac agcaaggtta gcaagttagt catatctgaa cttaaagagg
4981 gaggaatgga tttttatgtg cccagacaag aatcaatgtt cagatggatg agattctcag
5041 atctaagcac atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg
5101 tcgaatgacg ccgctccatc taatgatggt gctgctggtc tcgtaccaga gggcaataac
5161 gagacccttc ccctagaacc agttgcgggc gcagctatag ccgcacccgt cactggccaa
5221 aataatataa ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc
5281 acagtgtcac ccagaaactc tcctggagaa attttattaa atttagagtt gggccctgat
5341 ttgaaccctt atttggccca tttgtcaagg atgtacaatg ggtatgctgg tggagtggaa
5401 gttcaggttc tcctggcagg gaacgcgttc actgccggaa agatcctttt cgccgccgtc
5461 ccgccaaatt tcccagtgga attcttaagc ccagcccaga tcacaatgct cccacactta
5521 atagtagatg ttaggactct tgaaccaatc atgatcccgc tccctgatgt taggaataca
5581 ttcttccatt ataataatca gcctaacagc cgcatgagat tagtggctat gctctatacc
5641 ccactcagat ctaatggttc aggtgatgac gtctttactg tctcttgtag ggttttgact
5701 aggcctactc ctgattttga gttcacttat ttagtgccac cttctgttga atctaaaact
5761 aagccttttt ccctacctat tttaaccctt tctgagctca caaattcgag gtttccagtc
5821 cccatcgatt cgctttttac cgcccagaat aatgtgttgc aggtgcagtg tcaaaatggc
5881 aggtgtacac ttgatggtga gttacagggc acaacccagt tgctcccaac tggcatctgc
5941 gcattcagag gacgggtgac agcacaaatc aaccaacgtg acaggtggca catgcaactg
6001 caaaacctca atggtacaac atatgaccca actgatgatg tgccagcccc gctgggtaca
6061 cctgacttca agggcgtcgt gtttggaatg gtaagtcaaa gaaatgtggg tagtgatgcg
6121 cctggctcaa ccagagccca acaggcgtgg gtttcaacct atagccccca atttgtcccc
6181 aaattaggtt ctgtcaattt tagaattagt aataatgatg acttccaatt ccagccaaca
6241 aaattcacac cagtgggcat caatgatgat gatgatgatc acccgttcag acagtgggag
6301 ctaccaaatt attcagggga gcttaccttg aacatgaatc ttgccccccc agttgctcca
6361 aattttcctg gtgaacaatt gttattcttc agatcttttg tgccatgctc aggaggttac
6421 aaccaaggta ttatagattg tcttattccc caagaatgga tccaacattt ctatcaggaa
6481 tcagcaccct cccagtcaga tgtggcccta atcaggtatg tcaaccccga tacgggacgt
6541 acactgtttg aagcaaaatt gcacagatct ggttatatca ctgtggctca ctctggagat
6601 tatcctcttg ttgttccggc taatggacac tttagatttg attcttgggt aaatcagttt
6661 tactcactcg ccccaatggg aactgggaat gggcgaagga gggctcagta atggctgggg
6721 ctttcattgc aggattggca ggcgacttgc tcacgtcatc tgtgggctcc cttgtgaacg
6781 caggggcaaa cgccatcaac caaaaggtag actttgaaaa caacaaacaa ctccagtctg
6841 cttcctttca gcatgataaa gagatgctcc aagcgcaggt gagggcaacc aagcagctgc
6901 aatctgaaat gatagcccta aaacaggggg ttttggccgc aggcggcttt tcccccactg
6961 atgcagcaag gggatccatt ggtgcaccca tgacaaaggt gcttgactgg tctggcactc
7021 gatactgggc gcccaattcc acaaagacaa ctggctattc gggacaattt acctcttcac
7081 ctgtgcatag cccaaatgct ccacaatcaa aacctgcaaa gcctaggtct ccagttcctt
7141 cctcctcttc tagtagtgtt tatagtatgt atactcaatc tactcatttg acatctggcc
7201 cttctagtaa tgcttcttct gcctctacaa agttgacaaa tttaagctct ggctcctctc
7261 aaaacagaac agcagagtgg gtgaatcaac agagaaatct tagccctttc atgagtggcg
7321 cacttaacat ctcacatgtt acgccaccct caagtagggc ttccagttct gggacggtct
7381 caaccgtgcc caaggaagtt ttggactcct ggacgtctgc gtttaacaca cacagacagc
7441 cgctcttcgc acacctcagg gtgagggggg agtcacgtgt ttagtgaaaa gaaataattg
7501 gctataatgt gatttctttc taaatttggc taatttgtat ctttt
//