Typing tool
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Typing tool
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Complete norovirus genomes
| LC848162 | GII.17 | |
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| GII.P17 |
ORF1: 5..5113
ORF2: 5094..6716
ORF3: 6716..7495
LOCUS LC848162 7556 bp RNA linear VRL 17-OCT-2024
DEFINITION Norovirus GII.17 2022/TH_HC41_2_06_Jun2 RNA, complete genome.
ACCESSION LC848162
VERSION LC848162.1
KEYWORDS .
SOURCE Norovirus GII.17
ORGANISM Norovirus GII.17
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Boonyos,P., Phoonsangwalthong,P., Uppchai,S., Tacharoenmuang,R.,
Towayunanta,W., Chuntrakool,K., Oku,K., Motooka,D., Kotaki,T.,
Mekada,E., Tatsumi,M., Kobayashi,T. and Mizushima,H.
TITLE Characteristics of asymptomatic norovirus infection revealed by
surveys of community residents
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7556)
AUTHORS Mizushima,H., Boonyos,P., Phoonsangwalthong,P., Motooka,D. and
Oku,K.
TITLE Direct Submission
JOURNAL Submitted (15-OCT-2024) Contact:Hiroto Mizushima Thailand-Japan
Research Collaboration Center on Emerging and Re-emerging
Infections, Section of Viral Infections; Tiwanon Road, Muang,
Nonthaburi 11000, Thailand URL
:http://www.biken.osaka-u.ac.jp/en/laboratories/detail/28
COMMENT ##Assembly-Data-START##
Assembly Method :: MEGAHIT v. 1.2.9
Sequencing Technology :: DNBSEQ-G400RS
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7556
/organism="Norovirus GII.17"
/mol_type="genomic RNA"
/strain="2022/TH_HC41_2_06_Jun2"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:552592"
/geo_loc_name="Thailand: Bangkok"
/collection_date="2022-06-23"
/note="genotype: GII.17[P17]"
gene 5..5113
/gene="ORF1"
CDS 5..5113
/gene="ORF1"
/codon_start=1
/product="non-structural polyprotein precursor"
/protein_id="BFT93965.1"
/translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR
SKQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVA
QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI
IGKLRPLNILNILATCDWTFAGIVEALILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK
LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTYLA
RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHFKPDSSHIRLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV
KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALH
HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDR
GGCPKPRDEDNLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGTEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTT
PGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..1003
/gene="ORF1"
/product="p48"
mat_peptide 1004..2101
/gene="ORF1"
/product="NTPase"
mat_peptide 2102..2638
/gene="ORF1"
/product="p22"
mat_peptide 2639..3037
/gene="ORF1"
/product="VPg"
mat_peptide 3038..3580
/gene="ORF1"
/product="Pro"
mat_peptide 3581..5110
/gene="ORF1"
/product="RdRp"
gene 5094..6716
/gene="ORF2"
CDS 5094..6716
/gene="ORF2"
/codon_start=1
/product="VP1"
/protein_id="BFT93966.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNFRISNNDDFQFQPTKFTPVGIN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6716..7495
/gene="ORF3"
CDS 6716..7495
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="BFT93967.1"
/translation="MAGAFIAGLAGDLLTSSVGSLVNAGANAINQKVDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTRTTGYSGQFTSSPVHMSSPNVPQSKPAKPRSPVPSSSSSSVYSMHTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa
61 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaat atgtctgtca cttttaagaa
121 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc
181 accaaggcca ccgacaccgg aattggtgaa gagaatacct ccacccccac ccaatggcga
241 ggatgaacca gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac
301 aactgtggca caacctgacg cacaaaacac agcttacagt gttcccccac ttagccagag
361 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga
421 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc
481 tgctgcaata agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt
541 ctacactccc cagtatttga tagatccagg aactcttaag aacttgagtg gagagacttt
601 cccatacacg gcctttgaca ataactgcta tgccttctgt tgctgggtcc tagacctcaa
661 cgactcctgg cttagcagga gaatgatcca aagaacaact ggatttttca aaccttatca
721 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa
781 tgctgtccta tgcgctctct cctcactctt cactagaccc attaaggaca tcattgggaa
841 gcttagacca ctgaacattc ttaatatact ggcaacctgc gattggactt ttgcaggcat
901 agtggaagcc ttgatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt
961 gtctgcgatg attgctccct tactcggcga ctacgagatg caaggccccg aagacctggc
1021 tgtggaactt gtacccgtgg tgatgggagg aataggtttg gtgttaggat tcaccaaaga
1081 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgca aggatttagg
1141 atcttatgga ttggagatac tcaaattggt catgaagtgg ttcttcccca aaaaggagga
1201 ggctaacgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat
1261 agaaaacaat cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag
1321 gactcttgac ttggaagaag agaaagcaag gaaactgtcg accaaatcgg cgtcacctga
1381 catcgtgggt acaataaacg cactgctggc taggatagca gccgccagat cactggtcca
1441 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag
1501 accaggtata ggaaagacct atctggccag agagctagcc aagaaagtcg cgtcaacact
1561 gtcaggcgac caaagaatcg gactggtacc taggaatggt gtcgaccatt gggacgccta
1621 caagggagaa agggtggtcc tgtgggatga ttatggtatg agcaacccta tacaggacgc
1681 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg ataggattga
1741 aaacaaagga aaagtgttcg acagtgacgc cataattata acaaccaacc ttgcaaaccc
1801 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta
1861 tgcagacgca cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg
1921 gaaagaccat ttcaaaccag actcctcaca cattagactt cagctggcac cacagggagg
1981 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtaaagtccc tgacgattgg
2041 ttccctgatc gccagggcct ccggtttgct ccacgagaga atggatgagt tcgagctcca
2101 aggctctgac ctgccaacct tcaattttga ccgcaataaa gtcgctgcct tcagacaatt
2161 ggcagctgaa aacaaatatg gtcttatgga tacattgagg gtcggcaacc aactgaaaag
2221 tgttaagacc ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca
2281 aatagtgtat aatggatgca cctatactat ggaatctgat gggaggggca aggttgtggt
2341 tgaaaaggta caaaacgcaa cagttcaaac caataatgaa ctcgtagggg cactccacca
2401 cctgagatct gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct
2461 actccaaatt gctggcgcag cctttgtcac ctcacgcatc gtgaggcgca tgaacatatc
2521 aaacctctgg tcgaagccac ccattgagga gggtgatgag cctgaggaca gaggagggtg
2581 ccccaagccc agggatgaag ataacctcac tattgactct agagacatta aagtggaagg
2641 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg
2701 cctcagtgat gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata
2761 ctcaatagag gaatacctcc aagacaggga caggtactat gaagagcttg ccattgctaa
2821 ggccactgag gaagacttct gtgaagagga ggagatcaaa atccgccaga gaatcttccg
2881 acccaccagg aagcaacgga aagaggaaag ggccacgctc gggcttgtca caggaacgga
2941 aatcagaaag aggaatccag atgattttaa accaaaagga aaattgtggg ctgatgacaa
3001 caggagcgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag
3061 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc
3121 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtgcccataa accaaatcca
3181 aatccacaaa tctggagaat tttgccgctt gcggtttcca aagccaatta gaccagacgt
3241 gagtgggatg atcttggaag agggcgcccc tgaaggcact gttgtgtcta ttctcatcaa
3301 aaggacaaca ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa
3361 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa
3421 aggcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacatat ataaaagggg
3481 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat
3541 atgtgccaca cagggaagtg agggtgaagc cactcttgaa ggagatgaca acaagggtac
3601 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaagacaaa
3661 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg
3721 tgggagggac ccgcgcgtga agggaggccc atctctgcaa caagttatga gagatcaact
3781 caaacctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa
3841 gaagactatc atcaatgttc tggaacagac cattgaccct cctcaaaagt ggtcatatgc
3901 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgttcggaa
3961 gaatgactac tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc
4021 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga
4081 cgagctcgtg aaaactgaca aaatttatgg caaaatcaag aaaagactcc tatggggctc
4141 tgacctctcc acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaactcaa
4201 agcaaattgt attacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat
4261 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga
4321 ctccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc
4381 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt
4441 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca
4501 atggaattct attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacgggatt
4561 aggtcctgac atcattcaag ctaactccat gtactctttc tatggtgatg atgagattgt
4621 gagcacagac ataaaattgg acccagagaa attaaccgca aagctcaaag aatatggcct
4681 taaacccact cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg
4741 gttaactttc cttcgccgga cagtcacccg tgatccagca ggttggtttg gaaagttgga
4801 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag
4861 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagagtc
4921 ctctctacat ggaccctcat tttacagcaa ggttagcaag ttagtcatat ctgaacttaa
4981 agagggagga atggattttt atgtgcccag acaagaatca atgttcagat ggatgaggtt
5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga
5101 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc cggtctcgta ccagagggca
5161 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg
5221 gccaaaataa tataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag
5281 agttcacagt gtcacccaga aactctcctg gagaaatttt attaaattta gagttgggcc
5341 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag
5401 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg
5461 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac
5521 acttaatagt agatgttagg actcttgaac caatcatgat cccactccct gatgttagga
5581 atacattctt ccattataat aatcagccta acagccgcat gagattagtg gctatgctct
5641 ataccccact cagatctaat ggttcaggtg atgacgtctt tactgtctct tgtagggttt
5701 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta
5761 aaaccaagcc tttttcccta cctattttaa ccctttctga gctcacaaat tcgagatttc
5821 cagtccccat cgattcgctt tttaccgccc agaataatgt gttgcaggtg cagtgtcaaa
5881 atggcaggtg tacacttgat ggtgagctac aaggcacaac ccagttgctc ccaaccggca
5941 tctgtgcatt cagaggacgg gtgacagcac aaatcaacca acgtgacagg tggcacatgc
6001 aactgcaaaa cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg
6061 gtacacctga cttcaagggc gtcgtgtttg gaatggtaag ccaaagaaat gtgggtagtg
6121 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg
6181 tccccaaatt aggttctgtc aattttagaa ttagtaataa tgatgacttc caattccagc
6241 caacaaaatt cacaccagtg ggcatcaatg atgatgatga tgatcacccg ttcagacagt
6301 gggagctacc aaattattca ggggagctca ccttgaacat gaatcttgcc cccccagttg
6361 ctccaaattt tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag
6421 gttacaacca aggtattata gattgtctta ttccccaaga atggatccaa catttctatc
6481 aggaatcagc accctcccag tcagatgtgg ccctaatcag gtatgtcaac cccgatacgg
6541 gacgtacact gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg
6601 gagattatcc tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc
6661 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc
6721 tggggctttc attgcaggat tggcaggcga cttgctcacg tcatctgtgg gctcccttgt
6781 gaacgcaggg gcaaacgcca tcaaccaaaa ggtggacttt gaaaacaata aacaactcca
6841 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca
6901 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc
6961 cactgatgca gcaaggggat ccattggtgc acccatgaca aaggtgcttg actggtctgg
7021 cactcgatac tgggcgccca attccacaag gacaactggc tattcgggac aattcacctc
7081 ttcacctgtg catatgtcta gcccaaacgt tccacaatca aaacctgcaa agcctaggtc
7141 tccagttcct tcctcctctt ctagtagtgt ttatagtatg catactcaat ctactcattt
7201 gacatctggc tcttctagta atgcttcttc tgcctctaca aagttgacaa atttaagctc
7261 tggctcctct caaaacagaa cagcagagtg ggtgaatcaa cagagaagtc ttagcccttt
7321 catgagtggc gcacttaaca tctcacatgt tacgccaccc tcaagtaggg cttccagttc
7381 tgggacggtc tcaaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac
7441 acacagacag ccgctcttcg cacacctcag ggtgaggggg gagtcacgtg tttagtgaaa
7501 agaaataatt ggctataatg tgatttcttt ctaaatttgg ctaatttgta tctttt
//