Typing tool

Complete norovirus genomes

LC369216  GII.17
 GII.P17

Length: 7,524 | 3 CDS

ORF1: 1..5098
ORF2: 5079..6701
ORF3: 6701..7480
LOCUS       LC369216                7524 bp    RNA     linear   VRL 28-JUN-2023
DEFINITION  Norovirus GII NoV/Hu/JP/2015/GII.P17-GII.17/GU-56 genomic RNA,
            nearly complete genome.
ACCESSION   LC369216
VERSION     LC369216.1
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1
  AUTHORS   Matsushima,Y., Mizukoshi,F., Sakon,N., Doan,Y.H., Ueki,Y.,
            Ogawa,Y., Motoya,T., Tsukagoshi,H., Nakamura,N., Shigemoto,N.,
            Yoshitomi,H., Okamoto-Nakagawa,R., Suzuki,R., Tsutsui,R.,
            Terasoma,F., Takahashi,T., Sadamasu,K., Shimizu,H., Okabe,N.,
            Nagasawa,K., Aso,J., Ishii,H., Kuroda,M., Ryo,A., Katayama,K. and
            Kimura,H.
  TITLE     Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase
            Regions of Human Norovirus GII.P17-GII.17 in 2013-2017
  JOURNAL   Front Microbiol 10, 2189 (2019)
   PUBMED   31611853
  REMARK    DOI:10.3389/fmicb.2019.02189
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7524)
  AUTHORS   Doan,Y.H., Katayama,K. and Kimura,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-FEB-2018) Contact:Yen Hai Doan National Institute of
            Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011,
            Japan
FEATURES             Location/Qualifiers
     source          1..7524
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="NoV/Hu/JP/2015/GII.P17-GII.17/GU-56"
                     /host="Homo sapiens"
                     /db_xref="taxon:122929"
                     /country="Japan:Gunma"
                     /collection_date="2015"
                     /note="genotype: GII.P17-GII.17"
     gene            <1..5098
                     /gene="POL"
     CDS             <1..5098
                     /gene="POL"
                     /note="start codon is not identified"
                     /codon_start=2
                     /product="nonstructural polyprotein"
                     /protein_id="BBD04620.1"
                     /translation="SNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQP
                     PPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDA
                     QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL
                     AKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW
                     LSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKL
                     RPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL
                     AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK
                     KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK
                     SASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA
                     KKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP
                     LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA
                     KRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS
                     GLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD
                     ELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRS
                     ARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCP
                     KPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
                     YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
                     GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS
                     LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT
                     VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
                     GCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
                     GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
                     GKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWS
                     GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
                     TMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
                     TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS
                     QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
                     YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN
                     HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
                     MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            5079..6701
                     /gene="VP1"
     CDS             5079..6701
                     /gene="VP1"
                     /codon_start=1
                     /product="capsid protein VP1"
                     /protein_id="BBD04621.1"
                     /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
                     NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
                     VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
                     VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
                     SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
                     QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
                     VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
                     DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
                     CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
                     VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
     gene            6701..7480
                     /gene="VP2"
     CDS             6701..7480
                     /gene="VP2"
                     /codon_start=1
                     /product="capsid protein VP2"
                     /protein_id="BBD04622.1"
                     /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
                     SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMAKVLDWSG
                     TRYWAPNSTKTTGYSGQFTSSPVHMSSPNASQSKPAKPRSLAPSSSSSSVYSMYTQST
                     HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
                     ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN      
        1 gtctaacgac gcttccgctg ccgttgctgg caaaaacaac aacaacgaca aggaaaaatc
       61 ttcaagtgac agcttgtttg ctaacatgtc tgtcactttt aagaaagccc tcggggcgcg
      121 gtctaaacaa ccgcccccgg gagaaacaaa acaaatacaa aaaccaccaa ggccaccgac
      181 accggaattg gtgaagagaa tacctccacc cccacccaat ggcgaggatg aaccagggat
      241 agtgtacaag gtgggagagg gtgtgtctgg gctgcccgac ctaacaactg tggtacaacc
      301 tgacgcacaa aacacagctt atagtgttcc cccacttagc cagagagaag tcggcgaagc
      361 taaagaaccg ctgcctggct ccattctgga aatgtgggat ggtgagatct accactatgg
      421 gctgtatgtt gagcgggggc atgtgctcgg agtacacaaa ccacctgctg caataagcct
      481 tgccaaaatt gaaataacac cgctgtctct ctactggaga gtggtctaca ctccccagta
      541 tttgatagat ccaggaactc ttaagaactt gagtggagag actttcccat acacggcctt
      601 tgacaacaac tgttatgcct tctgttgttg ggtcctagac ctcaacgact cctggcttag
      661 caggagaatg atccaaagaa caactggatt cttcaaacct tatcaggatt ggaacagaaa
      721 acccttacca accatggatg aaccgaaaat caagaaggcc gcgaatgctg tcctatgcgc
      781 tctctcctca ctcttcacta gacccattaa ggacatcatt ggaaagctta gaccactgaa
      841 cattcttaat atactggcaa cctgcgattg gacttttgca ggcatagtgg aatccttgat
      901 ccttcttgct gaactctttg gggtgttctg gacaccccca gatgtgtctg cgatgattgc
      961 tcccttactc ggtgactacg agatgcaagg ccccgaagac ctggccgtgg aacttgtgcc
     1021 cgtggtgatg ggaggaatag gtttggtgtt aggattcacc aaagaaaaga tcggcaagat
     1081 gctttcatca gctgcgacca cacttagggc ctgcaaggat ctaggatctt atggattgga
     1141 gatactcaaa ttggtcatga agtggttctt ccccaagaag gaggaggcta acgaactagc
     1201 catggtgagg gccattgagg atgcagtcct ggatttggag gcaatagaaa acaatcacat
     1261 gaccaccctt ctcaaggata aagacagcct ggccacatac atgaggactc ttgacttgga
     1321 agaagagaaa gcaaggaaac tgtcaaccaa atcggcgtca cctgacatcg tgggtacaat
     1381 aaacgcatta ttggctagga tagcagccgc caggtcactg gtccacaagg ctaaggagga
     1441 gctctcgagc agacagagac ctgttgttgt gatgatatca ggtagaccag gtataggaaa
     1501 gacccatctg gccagagagc tagccaagaa agttgcgtca acactgtcag gcgaccaaag
     1561 gattggactg gtacctagaa atggcgtcga ccattgggac gcctacaagg gagaaagggt
     1621 ggtcctgtgg gatgattatg gtatgagcaa ccctatacag gacgcactga ggctccaaga
     1681 attggctgac acctgtcctc tgaccctaaa ttgtgatagg attgaaaaca aaggaaaagt
     1741 gttcgacagt gatgccataa ttataacaac caaccttgca aacccagcac cactagacta
     1801 tgtcaacttt gaggcctgct ctagacgcat agacttcttg gtgtatgcag acgcacctga
     1861 cattgagaag gctaagcgtg acttccctgg ccaaccagat atgtggaaag accatttcag
     1921 accagacttc tcacacatta aacttcagct ggcaccacag ggaggttttg acaaaaatgg
     1981 caacacccca catggcaaag gtgtggtgaa gtccctgacg attggttctc tgatcgccag
     2041 ggcctccggc ttgctccacg agagaatgga tgaattcgag ctccaaggct ctgacctgcc
     2101 aaccttcaat tttgaccgca acaaagtcgc cgccttcaga caattagcag ctgaaaacaa
     2161 atatggtctt atggacacat tgagggtcgg caaccaactg aaaagtgtta agaccctgga
     2221 tgagctgaag caggccataa agaacatcag tatcaagaag tgtcagatag tgtataatgg
     2281 atgcacctat accatggaat ctgatgggag gggcaaggtt gtggttgaaa aggtacaaaa
     2341 cgcaacagtt caaaccaaca atgaacttgt aggggcgctc caccacctga gatctgcaag
     2401 gataagatac tatgttaaat gtttccaaga agccatttac tctctactcc aaattgctgg
     2461 tgcagccttc gtcacctcac gcatcgtgag gcgcatgaac atatcaaacc tctggtcgaa
     2521 gccacccatc gaggagggtg atgagcctga agacagagga ggatgcccca agcccaggga
     2581 tgaagatgac ctcactattg actctagaga cattaaagtg gaagggaaga agggcaagaa
     2641 caagtctggc cggggcaaga aacacacagc cttctcttcc aagggcctca gtgatgaaga
     2701 gtacgatgag tacaagagaa tcagagagga gaggaatggc aaatactcaa tagaggaata
     2761 cctccaagat agggacagat actatgaaga gcttgccatt gctaaggcta ctgaggagga
     2821 cttctgtgag gaggaggaga tcaaaatccg ccagagaatc ttccgaccca ccaggaagca
     2881 gcggaaagag gaaagggcca cgcttgggct tgtcacagga tcggaaatca gaaagaggaa
     2941 tccagatgac tttaaaccaa aaggaaaatt gtgggctgat gacaacagga gcgtggatta
     3001 caatgagagg atagattttg aggctccccc gagtgtttgg tctaggatag tcaactttgg
     3061 cacaggctgg ggattctggg tttctccaag tctctttata acttcaacac acgtcatacc
     3121 aaaaggaatc actgaggcct ttggagtgcc cataaaccaa atccaaattc acaaatctgg
     3181 agaattttgc cgcttgcggt ttccaaagcc aattagacca gacgtgagtg ggatgatctt
     3241 ggaagagggc gcccctgaag gcactgttgt gtctattctc atcaaaagga caacagggga
     3301 gctgatgcct cttgcagtca gaatggggac tcatgccaca atgaaaatcc aaggtagaac
     3361 ggtgggtggt cagatgggta tgcttctcac tggctcaaat gctaaaagca tggatctagg
     3421 cacaacgcca ggtgactgcg gatgtccata catatacaaa aggggcaatg accttgtggt
     3481 cattggggtg cacactgcag cagctcgtgg aggcaacacg gtcatatgtg ccacacaggg
     3541 aagtgaaggt gaagccactc ttgaaggagg tgacaacaag ggtacctatt gtggagcccc
     3601 cattttggga cctggcaatg caccaaaatt gagcacaaag acaaaattct ggagatcctc
     3661 taacgcaccg cttcccccag gtacttatga accagcatac cttggtggga gagacccgcg
     3721 cgtgaaggga ggcccatctc tgcaacaagt tatgagagac caacttaaac ctttcacaga
     3781 gcccagaggg aagccaccaa acccaaatgt cttagagtca gcaaagaaga ctatcatcaa
     3841 tgttctggaa caaaccattg acccccctca aaagtggtca tatgcccaag cttgtgcatc
     3901 cctcgacaag acaacctcca gtggataccc gcaccacgtc cggaagaatg actattggag
     3961 tggtgaatcc ttcacaggaa aacttgcaga tcaggcttca aaagcaaatc tcatgtatga
     4021 ggaaggcaag cacatgcaac cagtttacac cgcagcactc aaagacgagc tcgtgaaaac
     4081 tgacaaaatt tatggcaaaa tcaagaaaag actcctgtgg ggttctgacc tctccacaat
     4141 gattcgatgc gccagagcat ttggtggtct catggatgaa ttcaaagcaa attgtattac
     4201 actccctatc agagttggta tgaatatgaa tgaagatggt cccataatat ttgagaaaca
     4261 ctccaggtac aggtaccact atgatgctga ttactcccgc tgggactcca cacaacagcg
     4321 ggcagtgctg gaagcggcac ttgaaatcat ggtgagattt tctgctgagc cacagctggc
     4381 acaaatagtg gcagaggacc tgctgtcacc aagtgtggtt gatgtgggcg atttcaaaat
     4441 cgctatcaat gaaggcctac catctggcgt gccttgcacc tcacaatgga attctattgc
     4501 ccactggtta cttaccttgt gtgccctttc tgaagtgaca ggattaggtc ctgacatcat
     4561 acaagctaac tccatgtact ctttctatgg tgatgatgag attgtgagca cagacataaa
     4621 attggaccca gagaaattga ccgcaaagct caaagaatat ggccttaaac ccactcggcc
     4681 cgacaaaact gaggggccgt tggtgattag tgaggacctg aatgggttga ctttcctccg
     4741 ccgaacagtc acccgtgatc cagcaggttg gtttggaaag ttggaccaaa actccatcct
     4801 caggcagttg tactggacaa gaggacccaa ccatgaagac cccagtgaga ccatgatacc
     4861 acacgcacaa agacctgtgc agctcatggc actactagga gaatcctccc tacatggacc
     4921 ctcattttac agcaaggtta gcaaattagt catatctgaa cttaaagagg gaggaatgga
     4981 tttttatgtg cctagacaag agtcaatgtt cagatggatg aggttctcag atctaagcac
     5041 atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg
     5101 ccgctccatc taatgatggt gctgctggtc tcgtaccaga gggcaacaac gagacccttc
     5161 ccctagaacc agttgcgggc gcagctatag ccgcacccgt cactggccaa aataatataa
     5221 ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc acagtgtcac
     5281 ccagaaactc tcctggagaa attttattaa atttagagtt gggccctgat ttgaaccctt
     5341 atttggctca tttgtcaagg atgtacaatg ggtatgctgg tggagtggaa gttcaggttc
     5401 tcctggcagg gaacgcgttc actgccggaa agatcctctt cgccgccgtc ccgccaaatt
     5461 tcccagtgga attcttaagc ccagcccaga tcacaatgct cccacattta atagtagatg
     5521 ttaggactct tgaaccaatt atgatcccac tccctgatgt taggaataca ttcttccatt
     5581 atagtaacca gcctaacagc cgcatgagat tagtggctat gctctatacc ccactcagat
     5641 ctaatggctc aggtgatgat gtctttactg tctcttgcag ggttttgact aggcctactc
     5701 ctgattttga gttcacttat ttagtgccac cttctgttga atctaaaact aagccttttt
     5761 ccttacctat tttaaccctt tctgagctca caaattcgag gtttccagtc cccatcgatt
     5821 cgcttttcac cgcccagaat aatgtgttgc aggtgcagtg tcaaaatggc aggtgtacac
     5881 ttgatggtga gttacaaggc acaacccagt tgctcccaac tggcatctgt gcattcagag
     5941 gacgggtgac agcacaaatt aaccaacgtg acaggtggca catgcaactg caaaacctca
     6001 atggtacaac atatgaccca actgatgatg tgccagcccc gctgggtaca cctgacttca
     6061 agggcgtcgt gtttgggatg gtaagccaaa gaaatgtggg taatgatgcg cctggctcaa
     6121 ccagagccca acaggcgtgg gtttcaacct atagccccca atttgtcccc aaattaggtt
     6181 ctgtcaatct tagaattagt gataatgatg atttccaatt ccagccgaca aaattcacac
     6241 cagtgggcgt caatgatgac gatgatggcc acccgttcag acaatgggaa ctaccaaact
     6301 attcagggga gcttaccttg aatatgaatc ttgccccccc agttgctcca aattttcctg
     6361 gtgaacaatt gttattcttc agatctttcg tgccatgctc aggaggttac aaccaaggta
     6421 ttatagattg tcttattccc caagaatgga tccaacactt ctatcaggaa tcagcaccct
     6481 cccagtcaga cgtggcccta atcaggtatg tcaaccccga tacgggacgt acactgtttg
     6541 aagcaaaatt gcacagatct ggttacatca ctgtggctca ctctggagac tatcctcttg
     6601 ttgttccggc taatggacac tttagatttg attcttgggt aaatcagttt tactcactcg
     6661 ccccaatggg aactgggaat gggcgaagga gggctcagta atggctgggg ctttcattgc
     6721 aggattggca ggcgacatgc tcacgtcatc tgtgggctcc cttgtgaacg caggggcaaa
     6781 cgccatcaac caaaagatag actttgaaaa caacaaacaa ctccagtctg cttcctttca
     6841 gcatgataaa gagatgctcc aagcgcaggt gagggcaacc aagcagctgc aatctgaaat
     6901 gatagcccta aaacaggggg ttttggccgc aggcggcttt tcccccactg atgcagcaag
     6961 gggatccatt ggtgcaccca tggcaaaggt gcttgactgg tctggcactc gatactgggc
     7021 gcccaattcc acaaagacaa ctggctattc gggacaattc acctcttcac ctgtgcatat
     7081 gtctagccca aatgcttcac aatcaaaacc tgcaaagcct aggtctctag ctccttcctc
     7141 ttcttctagc agtgtctata gtatgtatac tcaatctact catttaacat ctggctcttc
     7201 tagtaatgct tcttctgcct ccacaaaatt gacaaattta agctctggct cctctcaaaa
     7261 cagaacagca gagtgggtaa atcaacagag aagtcttagc cctttcatga gtggcgcact
     7321 taacatctca catgtcacgc caccctcaag tagggcttcc agttctggga cggtctcgac
     7381 cgtgcccaag gaagttttgg actcctggac gtctgcgttt aacacacaca gacagccgct
     7441 cttcgcacac ctcagagtga ggggggagtc acgtgtttag tgaaaagaaa taattggcta
     7501 taatgtgatt tctttctaaa tttg
//