Typing tool
|
Complete norovirus genomes
LC369216 | GII.17 | ||
---|---|---|---|
GII.P17 |
ORF1: 1..5098 ORF2: 5079..6701 ORF3: 6701..7480LOCUS LC369216 7524 bp RNA linear VRL 28-JUN-2023 DEFINITION Norovirus GII NoV/Hu/JP/2015/GII.P17-GII.17/GU-56 genomic RNA, nearly complete genome. ACCESSION LC369216 VERSION LC369216.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Matsushima,Y., Mizukoshi,F., Sakon,N., Doan,Y.H., Ueki,Y., Ogawa,Y., Motoya,T., Tsukagoshi,H., Nakamura,N., Shigemoto,N., Yoshitomi,H., Okamoto-Nakagawa,R., Suzuki,R., Tsutsui,R., Terasoma,F., Takahashi,T., Sadamasu,K., Shimizu,H., Okabe,N., Nagasawa,K., Aso,J., Ishii,H., Kuroda,M., Ryo,A., Katayama,K. and Kimura,H. TITLE Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase Regions of Human Norovirus GII.P17-GII.17 in 2013-2017 JOURNAL Front Microbiol 10, 2189 (2019) PUBMED 31611853 REMARK DOI:10.3389/fmicb.2019.02189 Publication Status: Online-Only REFERENCE 2 (bases 1 to 7524) AUTHORS Doan,Y.H., Katayama,K. and Kimura,H. TITLE Direct Submission JOURNAL Submitted (02-FEB-2018) Contact:Yen Hai Doan National Institute of Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7524 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="NoV/Hu/JP/2015/GII.P17-GII.17/GU-56" /host="Homo sapiens" /db_xref="taxon:122929" /country="Japan:Gunma" /collection_date="2015" /note="genotype: GII.P17-GII.17" gene <1..5098 /gene="POL" CDS <1..5098 /gene="POL" /note="start codon is not identified" /codon_start=2 /product="nonstructural polyprotein" /protein_id="BBD04620.1" /translation="SNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQP PPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDA QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL AKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW LSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKL RPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK SASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA KKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA KRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS GLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD ELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRS ARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCP KPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC GCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR GKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWS GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS TMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5079..6701 /gene="VP1" CDS 5079..6701 /gene="VP1" /codon_start=1 /product="capsid protein VP1" /protein_id="BBD04621.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6701..7480 /gene="VP2" CDS 6701..7480 /gene="VP2" /codon_start=1 /product="capsid protein VP2" /protein_id="BBD04622.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMAKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNASQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 gtctaacgac gcttccgctg ccgttgctgg caaaaacaac aacaacgaca aggaaaaatc 61 ttcaagtgac agcttgtttg ctaacatgtc tgtcactttt aagaaagccc tcggggcgcg 121 gtctaaacaa ccgcccccgg gagaaacaaa acaaatacaa aaaccaccaa ggccaccgac 181 accggaattg gtgaagagaa tacctccacc cccacccaat ggcgaggatg aaccagggat 241 agtgtacaag gtgggagagg gtgtgtctgg gctgcccgac ctaacaactg tggtacaacc 301 tgacgcacaa aacacagctt atagtgttcc cccacttagc cagagagaag tcggcgaagc 361 taaagaaccg ctgcctggct ccattctgga aatgtgggat ggtgagatct accactatgg 421 gctgtatgtt gagcgggggc atgtgctcgg agtacacaaa ccacctgctg caataagcct 481 tgccaaaatt gaaataacac cgctgtctct ctactggaga gtggtctaca ctccccagta 541 tttgatagat ccaggaactc ttaagaactt gagtggagag actttcccat acacggcctt 601 tgacaacaac tgttatgcct tctgttgttg ggtcctagac ctcaacgact cctggcttag 661 caggagaatg atccaaagaa caactggatt cttcaaacct tatcaggatt ggaacagaaa 721 acccttacca accatggatg aaccgaaaat caagaaggcc gcgaatgctg tcctatgcgc 781 tctctcctca ctcttcacta gacccattaa ggacatcatt ggaaagctta gaccactgaa 841 cattcttaat atactggcaa cctgcgattg gacttttgca ggcatagtgg aatccttgat 901 ccttcttgct gaactctttg gggtgttctg gacaccccca gatgtgtctg cgatgattgc 961 tcccttactc ggtgactacg agatgcaagg ccccgaagac ctggccgtgg aacttgtgcc 1021 cgtggtgatg ggaggaatag gtttggtgtt aggattcacc aaagaaaaga tcggcaagat 1081 gctttcatca gctgcgacca cacttagggc ctgcaaggat ctaggatctt atggattgga 1141 gatactcaaa ttggtcatga agtggttctt ccccaagaag gaggaggcta acgaactagc 1201 catggtgagg gccattgagg atgcagtcct ggatttggag gcaatagaaa acaatcacat 1261 gaccaccctt ctcaaggata aagacagcct ggccacatac atgaggactc ttgacttgga 1321 agaagagaaa gcaaggaaac tgtcaaccaa atcggcgtca cctgacatcg tgggtacaat 1381 aaacgcatta ttggctagga tagcagccgc caggtcactg gtccacaagg ctaaggagga 1441 gctctcgagc agacagagac ctgttgttgt gatgatatca ggtagaccag gtataggaaa 1501 gacccatctg gccagagagc tagccaagaa agttgcgtca acactgtcag gcgaccaaag 1561 gattggactg gtacctagaa atggcgtcga ccattgggac gcctacaagg gagaaagggt 1621 ggtcctgtgg gatgattatg gtatgagcaa ccctatacag gacgcactga ggctccaaga 1681 attggctgac acctgtcctc tgaccctaaa ttgtgatagg attgaaaaca aaggaaaagt 1741 gttcgacagt gatgccataa ttataacaac caaccttgca aacccagcac cactagacta 1801 tgtcaacttt gaggcctgct ctagacgcat agacttcttg gtgtatgcag acgcacctga 1861 cattgagaag gctaagcgtg acttccctgg ccaaccagat atgtggaaag accatttcag 1921 accagacttc tcacacatta aacttcagct ggcaccacag ggaggttttg acaaaaatgg 1981 caacacccca catggcaaag gtgtggtgaa gtccctgacg attggttctc tgatcgccag 2041 ggcctccggc ttgctccacg agagaatgga tgaattcgag ctccaaggct ctgacctgcc 2101 aaccttcaat tttgaccgca acaaagtcgc cgccttcaga caattagcag ctgaaaacaa 2161 atatggtctt atggacacat tgagggtcgg caaccaactg aaaagtgtta agaccctgga 2221 tgagctgaag caggccataa agaacatcag tatcaagaag tgtcagatag tgtataatgg 2281 atgcacctat accatggaat ctgatgggag gggcaaggtt gtggttgaaa aggtacaaaa 2341 cgcaacagtt caaaccaaca atgaacttgt aggggcgctc caccacctga gatctgcaag 2401 gataagatac tatgttaaat gtttccaaga agccatttac tctctactcc aaattgctgg 2461 tgcagccttc gtcacctcac gcatcgtgag gcgcatgaac atatcaaacc tctggtcgaa 2521 gccacccatc gaggagggtg atgagcctga agacagagga ggatgcccca agcccaggga 2581 tgaagatgac ctcactattg actctagaga cattaaagtg gaagggaaga agggcaagaa 2641 caagtctggc cggggcaaga aacacacagc cttctcttcc aagggcctca gtgatgaaga 2701 gtacgatgag tacaagagaa tcagagagga gaggaatggc aaatactcaa tagaggaata 2761 cctccaagat agggacagat actatgaaga gcttgccatt gctaaggcta ctgaggagga 2821 cttctgtgag gaggaggaga tcaaaatccg ccagagaatc ttccgaccca ccaggaagca 2881 gcggaaagag gaaagggcca cgcttgggct tgtcacagga tcggaaatca gaaagaggaa 2941 tccagatgac tttaaaccaa aaggaaaatt gtgggctgat gacaacagga gcgtggatta 3001 caatgagagg atagattttg aggctccccc gagtgtttgg tctaggatag tcaactttgg 3061 cacaggctgg ggattctggg tttctccaag tctctttata acttcaacac acgtcatacc 3121 aaaaggaatc actgaggcct ttggagtgcc cataaaccaa atccaaattc acaaatctgg 3181 agaattttgc cgcttgcggt ttccaaagcc aattagacca gacgtgagtg ggatgatctt 3241 ggaagagggc gcccctgaag gcactgttgt gtctattctc atcaaaagga caacagggga 3301 gctgatgcct cttgcagtca gaatggggac tcatgccaca atgaaaatcc aaggtagaac 3361 ggtgggtggt cagatgggta tgcttctcac tggctcaaat gctaaaagca tggatctagg 3421 cacaacgcca ggtgactgcg gatgtccata catatacaaa aggggcaatg accttgtggt 3481 cattggggtg cacactgcag cagctcgtgg aggcaacacg gtcatatgtg ccacacaggg 3541 aagtgaaggt gaagccactc ttgaaggagg tgacaacaag ggtacctatt gtggagcccc 3601 cattttggga cctggcaatg caccaaaatt gagcacaaag acaaaattct ggagatcctc 3661 taacgcaccg cttcccccag gtacttatga accagcatac cttggtggga gagacccgcg 3721 cgtgaaggga ggcccatctc tgcaacaagt tatgagagac caacttaaac ctttcacaga 3781 gcccagaggg aagccaccaa acccaaatgt cttagagtca gcaaagaaga ctatcatcaa 3841 tgttctggaa caaaccattg acccccctca aaagtggtca tatgcccaag cttgtgcatc 3901 cctcgacaag acaacctcca gtggataccc gcaccacgtc cggaagaatg actattggag 3961 tggtgaatcc ttcacaggaa aacttgcaga tcaggcttca aaagcaaatc tcatgtatga 4021 ggaaggcaag cacatgcaac cagtttacac cgcagcactc aaagacgagc tcgtgaaaac 4081 tgacaaaatt tatggcaaaa tcaagaaaag actcctgtgg ggttctgacc tctccacaat 4141 gattcgatgc gccagagcat ttggtggtct catggatgaa ttcaaagcaa attgtattac 4201 actccctatc agagttggta tgaatatgaa tgaagatggt cccataatat ttgagaaaca 4261 ctccaggtac aggtaccact atgatgctga ttactcccgc tgggactcca cacaacagcg 4321 ggcagtgctg gaagcggcac ttgaaatcat ggtgagattt tctgctgagc cacagctggc 4381 acaaatagtg gcagaggacc tgctgtcacc aagtgtggtt gatgtgggcg atttcaaaat 4441 cgctatcaat gaaggcctac catctggcgt gccttgcacc tcacaatgga attctattgc 4501 ccactggtta cttaccttgt gtgccctttc tgaagtgaca ggattaggtc ctgacatcat 4561 acaagctaac tccatgtact ctttctatgg tgatgatgag attgtgagca cagacataaa 4621 attggaccca gagaaattga ccgcaaagct caaagaatat ggccttaaac ccactcggcc 4681 cgacaaaact gaggggccgt tggtgattag tgaggacctg aatgggttga ctttcctccg 4741 ccgaacagtc acccgtgatc cagcaggttg gtttggaaag ttggaccaaa actccatcct 4801 caggcagttg tactggacaa gaggacccaa ccatgaagac cccagtgaga ccatgatacc 4861 acacgcacaa agacctgtgc agctcatggc actactagga gaatcctccc tacatggacc 4921 ctcattttac agcaaggtta gcaaattagt catatctgaa cttaaagagg gaggaatgga 4981 tttttatgtg cctagacaag agtcaatgtt cagatggatg aggttctcag atctaagcac 5041 atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg 5101 ccgctccatc taatgatggt gctgctggtc tcgtaccaga gggcaacaac gagacccttc 5161 ccctagaacc agttgcgggc gcagctatag ccgcacccgt cactggccaa aataatataa 5221 ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc acagtgtcac 5281 ccagaaactc tcctggagaa attttattaa atttagagtt gggccctgat ttgaaccctt 5341 atttggctca tttgtcaagg atgtacaatg ggtatgctgg tggagtggaa gttcaggttc 5401 tcctggcagg gaacgcgttc actgccggaa agatcctctt cgccgccgtc ccgccaaatt 5461 tcccagtgga attcttaagc ccagcccaga tcacaatgct cccacattta atagtagatg 5521 ttaggactct tgaaccaatt atgatcccac tccctgatgt taggaataca ttcttccatt 5581 atagtaacca gcctaacagc cgcatgagat tagtggctat gctctatacc ccactcagat 5641 ctaatggctc aggtgatgat gtctttactg tctcttgcag ggttttgact aggcctactc 5701 ctgattttga gttcacttat ttagtgccac cttctgttga atctaaaact aagccttttt 5761 ccttacctat tttaaccctt tctgagctca caaattcgag gtttccagtc cccatcgatt 5821 cgcttttcac cgcccagaat aatgtgttgc aggtgcagtg tcaaaatggc aggtgtacac 5881 ttgatggtga gttacaaggc acaacccagt tgctcccaac tggcatctgt gcattcagag 5941 gacgggtgac agcacaaatt aaccaacgtg acaggtggca catgcaactg caaaacctca 6001 atggtacaac atatgaccca actgatgatg tgccagcccc gctgggtaca cctgacttca 6061 agggcgtcgt gtttgggatg gtaagccaaa gaaatgtggg taatgatgcg cctggctcaa 6121 ccagagccca acaggcgtgg gtttcaacct atagccccca atttgtcccc aaattaggtt 6181 ctgtcaatct tagaattagt gataatgatg atttccaatt ccagccgaca aaattcacac 6241 cagtgggcgt caatgatgac gatgatggcc acccgttcag acaatgggaa ctaccaaact 6301 attcagggga gcttaccttg aatatgaatc ttgccccccc agttgctcca aattttcctg 6361 gtgaacaatt gttattcttc agatctttcg tgccatgctc aggaggttac aaccaaggta 6421 ttatagattg tcttattccc caagaatgga tccaacactt ctatcaggaa tcagcaccct 6481 cccagtcaga cgtggcccta atcaggtatg tcaaccccga tacgggacgt acactgtttg 6541 aagcaaaatt gcacagatct ggttacatca ctgtggctca ctctggagac tatcctcttg 6601 ttgttccggc taatggacac tttagatttg attcttgggt aaatcagttt tactcactcg 6661 ccccaatggg aactgggaat gggcgaagga gggctcagta atggctgggg ctttcattgc 6721 aggattggca ggcgacatgc tcacgtcatc tgtgggctcc cttgtgaacg caggggcaaa 6781 cgccatcaac caaaagatag actttgaaaa caacaaacaa ctccagtctg cttcctttca 6841 gcatgataaa gagatgctcc aagcgcaggt gagggcaacc aagcagctgc aatctgaaat 6901 gatagcccta aaacaggggg ttttggccgc aggcggcttt tcccccactg atgcagcaag 6961 gggatccatt ggtgcaccca tggcaaaggt gcttgactgg tctggcactc gatactgggc 7021 gcccaattcc acaaagacaa ctggctattc gggacaattc acctcttcac ctgtgcatat 7081 gtctagccca aatgcttcac aatcaaaacc tgcaaagcct aggtctctag ctccttcctc 7141 ttcttctagc agtgtctata gtatgtatac tcaatctact catttaacat ctggctcttc 7201 tagtaatgct tcttctgcct ccacaaaatt gacaaattta agctctggct cctctcaaaa 7261 cagaacagca gagtgggtaa atcaacagag aagtcttagc cctttcatga gtggcgcact 7321 taacatctca catgtcacgc caccctcaag tagggcttcc agttctggga cggtctcgac 7381 cgtgcccaag gaagttttgg actcctggac gtctgcgttt aacacacaca gacagccgct 7441 cttcgcacac ctcagagtga ggggggagtc acgtgtttag tgaaaagaaa taattggcta 7501 taatgtgatt tctttctaaa tttg //