Typing tool
|
Complete norovirus genomes
KX356908 | GII.17 | ||
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GII.P17 |
ORF1: 5..5113 ORF2: 5094..6716 ORF3: 6716..7495LOCUS KX356908 7556 bp RNA linear VRL 16-JUL-2016 DEFINITION Norovirus GII.17 strain GII.17/KM1509/CHN/2015, complete genome. ACCESSION KX356908 VERSION KX356908.1 KEYWORDS . SOURCE Norovirus GII.17 ORGANISM Norovirus GII.17 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7556) AUTHORS Liu,H., Liu,B., Li,C.I., Tao,Y., Li,X., Liu,J. and Li,C.B. TITLE Direct Submission JOURNAL Submitted (04-JUN-2016) Infection and Immunity Laboratory, Institute of Medical Biology, Chinese Academy of Medical Science, 935 Jiaoling Road, Kunming, Yunnan 650118, China FEATURES Location/Qualifiers source 1..7556 /organism="Norovirus GII.17" /mol_type="genomic RNA" /strain="GII.17/KM1509/CHN/2015" /isolate="KM1509" /isolation_source="feces" /host="Macaca mulatta" /db_xref="taxon:552592" /country="China" /collection_date="2015" /note="genotype: GII.17" CDS 5..5113 /codon_start=1 /product="nonstructural polyprotein" /protein_id="ANR94979.1" /translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR SKQPPPGETKQTQKPPRPPTPELVKRTPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVV QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA AISLAKIEITPLSLYWRVVYTPQYLVDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL NDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAADAVLCALSSLFTRPIKDI IGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA DTCPLTLNCDRIENKGKVFDSDAIIVTTNLANPAPLDYVNFEACSRRIDFLVYADAPD IEKAKRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALH HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDR GGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKNMDLGTT PGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG SDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS RWDSTQQRAVLEAALEIMVRFSAEPQLAQTVAEDLLSPSVVDVGDFKIAINEGLPSGV PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWT RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5094..6716 /codon_start=1 /product="capsid protein VP1" /protein_id="ANR94980.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLSSDICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDHPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" CDS 6716..7495 /codon_start=1 /product="capsid protein VP2" /protein_id="ANR94981.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRF" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa 61 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaac atgtctgtta cttttaagaa 121 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa cacaaaaacc 181 accaaggcca ccgacaccgg aattggtgaa gagaacacct ccacccccac ccaatggcga 241 ggatgaacca gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac 301 aactgtggta caacctgacg cacaaaacac agcttatagt gttcccccac ttagccagag 361 agaagtcggc gaagctaaag aaccgcttcc tggctccatt ctggaaatgt gggatggtga 421 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc 481 tgctgcaata agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt 541 ctacactccc cagtatttgg tagatcctgg aactcttaag aacttgagtg gagagacttt 601 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa 661 cgactcctgg cttagcagga gaatgatcca aagaacaact ggattcttca aaccttatca 721 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgga 781 tgctgtccta tgcgctctct cctcactctt cactagaccc attaaggaca tcattggaaa 841 gcttagacca ctgaacattc ttaatatact ggcaacctgc gattggactt ttgcaggcat 901 agtggaatcc ttgatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt 961 gtctgcgatg attgctccct tactcggaga ctacgagatg caaggccccg aagacctggc 1021 cgtggaactt gtgcccgtgg tgatgggagg aataggtttg gtgttaggat tcaccaaaga 1081 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg 1141 atcttatgga ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga 1201 ggctaacgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat 1261 agaaaacaat cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag 1321 gactcttgac ttggaagaag agaaagcaag gaaactgtca accaaatcgg catcacctga 1381 catcgtgggt acaataaacg cattattggc taggatagca gccgccaggt cactggtcca 1441 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag 1501 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact 1561 gtcaggcgac caaaggattg gactggtacc tagaaatggc gtcgaccatt gggacgccta 1621 caagggagaa agggtggttc tgtgggatga ttatggtatg agcaacccta tacaggacgc 1681 actgaggctc caagaattgg ctgatacctg tcctctgacc ctaaattgtg ataggattga 1741 aaacaaagga aaagtgttcg atagtgatgc cataattgta acaaccaacc ttgcaaaccc 1801 agcgccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta 1861 tgcagacgca cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg 1921 gaaagaccat tacagaccag acttctcaca cattaaactt cagctggcac cacagggagg 1981 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtgaagtccc tgacgattgg 2041 ttctctgatc gccagggcct ccggcttgct ccacgagaga atggatgagt tcgagctcca 2101 aggctctgac ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt 2161 agcagctgaa aacaaatatg gtcttatgga cacactgagg gtcggcaacc aactgaaaag 2221 tgttaagacc ttggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca 2281 gatagtgtat aatggatgca cctataccat ggaatctgat gggaggggca aggttgtggt 2341 tgaaaaggtg caaaacgcaa cagttcaaac caacaatgaa cttgtagggg cgctccacca 2401 cctgagatct gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct 2461 actccaaatt gctggtgcag ccttcgtcac ctcacgcatc gtgaggcgca tgaacatatc 2521 aaacctctgg tcgaagccac ccatcgagga gggtgatgag cctgaagaca gaggaggatg 2581 ccccaagccc agggatgaag atgacctcac tattgactct agagacatta aagtggaagg 2641 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg 2701 cctcagtgat gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata 2761 ctcaatagag gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa 2821 ggccactgag gaggacttct gtgaggagga ggagatcaaa atccgccaga gaatcttccg 2881 acccaccagg aagcagcgaa aagaggaaag ggccacgctt gggcttgtca caggatcgga 2941 aatcagaaag aggaacccag atgactttaa accaaaagga aaattgtggg ctgatgacaa 3001 caggagcgtg gactacaatg agaggataga ttttgaggct cccccgagtg tttggtctag 3061 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc 3121 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtgcccataa accaaatcca 3181 aattcacaaa tctggagaat tttgccgctt gcggtttcca aagccaatca gaccagacgt 3241 gagtgggatg atcttggaag agggcgcccc tgaaggcact gttgtgtcta ttctcatcaa 3301 aaggacaaca ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa 3361 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa 3421 aaacatggat ctgggcacaa cgccaggtga ctgcgggtgt ccatacatat acaaaagggg 3481 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat 3541 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac 3601 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaagacaaa 3661 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cgtaccttgg 3721 tgggagagac ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact 3781 taaacctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa 3841 gaagactatc attaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc 3901 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa 3961 gaatgactat tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc 4021 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga 4081 cgagctcgtg aaaactgaca aaatttatgg caaaatcaag aaaagactcc tgtggggttc 4141 tgacctctcc acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa 4201 agcaaattgt attacactcc ctatcagagt tggtatgaat atgaatgaag atggccccat 4261 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga 4321 ctccacacaa cagcgggcgg tgctggaagc ggcacttgaa atcatggtga gattttctgc 4381 tgagccacag ctggcacaaa cagtggcaga ggacctgctg tcaccaagtg tggtcgatgt 4441 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggtgtgcctt gcacctcaca 4501 atggaattct attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt 4561 aggtcctgac atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt 4621 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct 4681 taaacccact cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg 4741 gttgactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaaattgga 4801 ccaaagctcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag 4861 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc 4921 ctccctacat ggaccctcat tttatagcaa ggttagcaaa ttagtcatat ctgaacttaa 4981 agagggagga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt 5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga 5101 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca 5161 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg 5221 gccaaaataa cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag 5281 agttcacagt gtcacccaga aactctcctg gagaaatttt attaaactta gagttgggcc 5341 ctgacttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag 5401 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg 5461 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac 5521 atttaatagt agatgttagg actcttgaac caattatgat cccactccct gatgttagga 5581 atacattttt ccattatagt aaccagccta atagccgcat gagattagtg gctatgctct 5641 ataccccact cagatctaat ggttcaggtg atgatgtctt tactgtttct tgcagggttt 5701 tgactaggcc tactcctgat tttgagttta cttatttagt gccaccttct gttgaatcta 5761 aaactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggttcc 5821 cagtccccat cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa 5881 atggcaggtg tacacttgat ggtgagttac aaggcacaac ccagttgctc tcatctgaca 5941 tctgtgcatt cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc 6001 aactgcaaaa cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg 6061 gtacacctga cttcaagggc gtcgtgtttg ggatggtgag ccaaagaaat gtgggtagtg 6121 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg 6181 tccccaaatt aggttctgtc aatcttagaa ttagtgacaa tgatgatttc caattccagc 6241 cgacaaaatt cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacaat 6301 gggaactacc aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg 6361 ctccaaattt tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag 6421 gttacaacca aggtattata gattgtctta ttccccaaga atggatccaa cacttctatc 6481 aggaatcagc accctcccag tcagacgtgg ccctaatcag gtatgtcaac cctgatacgg 6541 ggcgtacact gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg 6601 gagaccatcc tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc 6661 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc 6721 tggggctttc attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt 6781 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca 6841 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca 6901 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc 6961 cactgatgca gcaaggggat ccattggtgc acccatgaca aaagtgcttg actggtctgg 7021 cactcgatac tgggcgccca attccacaaa gacaactggc tattcgggac aattcacctc 7081 ttcacctgtg catatgtcta gcccaaatgc tccacaatca aaacctgcaa agcctaggtc 7141 tctagctcct tcctcttctt ctagcagtgt ctatagtatg tatactcaat ctactcattt 7201 aacatctggc tcttctagta atgcttcttc tgcctccaca aaattgacaa atttaagttc 7261 tggctcctct caaaacagaa cagcagagtg ggtaaatcaa cagagaagtc ttagcccttt 7321 catgagtggc gcacttaaca tctcacatgt cacgccaccc tcaagtaggg cttccagttc 7381 tgggacggtc tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac 7441 acacagacag ccgctcttcg cacacctcag agtgaggggg gagtcacggt tttagtgaaa 7501 caagacaatt ggctataatg tgatttcttt ctaaatttgg ctaatttgta tctttt //