Typing tool
|
Complete norovirus genomes
KJ533132 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..1719 ORF2: 1700..3322 ORF3: 3322..4121LOCUS KJ533132 4121 bp RNA linear VRL 31-DEC-2014 DEFINITION Norovirus 12-BA-1/2012/GII.4 nonstructural protein and major capsid protein genes, complete cds; and minor structural protein gene, partial cds. ACCESSION KJ533132 VERSION KJ533132.1 KEYWORDS . SOURCE Norovirus 12-BA-1/2012/GII.4 ORGANISM Norovirus 12-BA-1/2012/GII.4 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 4121) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Norovirus GII.4 Sydney 2012 in Taiwan JOURNAL Unpublished REFERENCE 2 (bases 1 to 4121) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (04-MAR-2014) Centers for Disease Control Department of Health, Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..4121 /organism="Norovirus 12-BA-1/2012/GII.4" /mol_type="genomic RNA" /isolate="12-BA-1/2012/GII.4" /isolation_source="stool specimen from a 3-year old boy with diarrhea" /host="Homo sapiens" /db_xref="taxon:1508688" /country="Taiwan" /collection_date="Mar-2012" CDS 1..1719 /note="ORF1" /codon_start=1 /product="nonstructural protein" /protein_id="AID51527.1" /translation="MLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARG GNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPLPPGT YEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIINVLEQTI DPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKN MTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLP VRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLA QIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPD IIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGL TFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGE AALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFV NEDGVE" CDS 1700..3322 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AID51528.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQYDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV" CDS 3322..>4121 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="AID51529.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APITKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS NPSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKGVLDSWTGAFNTRRQPLFAHIRKRGESR" ORIGIN 1 atgctcctga cgggatccaa cgccaagagt atggacctag gcacaacacc aggcgactgc 61 ggctgcccct acatctacaa gagggggaat gactacgtgg tcataggagt ccatacggcc 121 gctgcccgtg gaggaaacac tgtcatatgt gccacccagg ggagtgaggg agaagccaca 181 cttgaaggag gtgacagtaa agggacatac tgtggcgcac caatcttggg cccagggagc 241 gctccgaagc tcagtaccaa gactaagttt tggagatcat ccacaacacc actcccacct 301 ggcacctacg aaccagccta cctcggtggc aaagacccca gagtcaaagg tggcccttca 361 ttgcaacaag ttatgaggga ccagctgaag ccattcacag aacccagagg caaaccacca 421 aggccaaatg tgttggaagc tgccaagaaa accatcatca atgtccttga gcaaacaatt 481 gatccacccc aaaaatggtc atttgcgcaa gcttgcgcat ctcttgacaa aaccacctcc 541 agcggccacc cgcaccacat gcggaaaaac gattgttgga atggggagtc cttcacagga 601 aaattggctg atcaagcctc caaggccaac ctaatgtttg aagagggaaa gaacatgact 661 ccagtctaca caggtgcact taaagatgag ttggtaaaga ccgataaagt ttatggtaag 721 gtcaagaaga ggcttctgtg gggttcagac ctggcgacca tgatacggtg cgcccgagct 781 tttggaggcc ttatggatga actcaaggca cactgtgtca cacttcctgt cagagttggt 841 atgaacatga atgaggatgg ccccatcatc tttgagaagc actccagata tagatatcac 901 tatgatgctg attattcccg gtgggactca acacaacaaa gggatgtgct agcagcagca 961 ctagaaatca tggttaagtt ctctccagaa ccacacctgg cccagatagt tgcagaagac 1021 ctcctttccc ctagcgtaat ggatgtaggt gactttcaaa tatcaataag tgagggtctc 1081 ccctctgggg taccttgtac ctcccagtgg aattccatcg cccactggct cctcactctt 1141 tgtgcactct ctgaagtcac ggacctgtcc cctgacatca ttcaggccaa ctcccttttc 1201 tccttctatg gtgatgatga gattgtaagc acagacataa agttggaccc agagaagctg 1261 acagcaaaac tcaaggagta cgggctgaaa ccaacccgcc ccgacaaaac tgaaggaccc 1321 cttgttatct ctgaagacct ggatggcctg acattcctcc ggagaactgt gacccgtgat 1381 ccagctggct ggtttggaaa attggaacaa agttcaattc tcaggcaaat gtactggacc 1441 aggggtccca accatgaaga tccatttgaa acaatgatac cacactccca aagacccata 1501 caattgatgt ccttgctggg cgaggctgca ctccacggcc cggcattcta tagcaaaatt 1561 agcaaattag tcattgcaga gttgaaggaa ggtggcatgg atttttacgt gcccagacaa 1621 gagccaatgt tcagatggat gagattctca gatctgagca cgtgggaggg cgatcgcaat 1681 ctggctccca gttttgtgaa tgaagatggc gtcgagtgac gccaacccat ctgatgggtc 1741 cgcagccaac ctcgtcccag aggtcaacaa tgaggttatg gctctggagc ccgttgttgg 1801 tgccgccatt gcggcgcctg tagcgggcca acaaaatgta attgacccct ggattagaaa 1861 taattttgta caggcccctg gtggagagtt tacagtatcc cctagaaacg ctccaggtga 1921 aatactatgg agcgcgccct tgggccctga tctaaatccc tacctatccc atttggccag 1981 aatgtacaat ggttatgcag gtggttttga agtgcaggta attctcgcgg ggaacgcgtt 2041 caccgccggg aaggtcatat ttgcagcagt cccaccaaat tttccaactg aaggcttgag 2101 ccccagccag gtcactatgt tcccccatat agtagtagat gttaggcaac tagaacctgt 2161 gttgattccc ttacccgatg ttaggaataa tttctatcat tacaatcaat caaatgaccc 2221 caccattaag ttgatagcaa tgttgtatac accacttagg gctaataatg ctggggatga 2281 tgtcttcaca gtttcttgcc gagttctcac gagaccatcc cccgattttg atttcatatt 2341 tctagtgcca cccacagttg agtcaagaac taaaccattc tctgtcccag ttttaactgt 2401 tgaggagatg accaattcaa gatttcccat tcctttggaa aagttgttca cgggtcccag 2461 cagtgccttt gttgtccaac cacaaaacgg caggtgcacg actgatggcg tgctcctagg 2521 caccacccaa ctgtctcctg tcaacatctg caccttcaga ggagatgtca cccatatcac 2581 aggtagtcgt aactacacaa tgaatttggc ttctcaaaat tggaacaatt atgacccaac 2641 agaagaaatc ccagcccctc taggaactcc agattttgtg gggaagattc aaggcgtgct 2701 cacccaaacc acaaggacag atggctcaac acgcggccac aaagctacag tgtacactgg 2761 gagcgccgac tttgctccaa aactgggtag agttcaattt gaaactgaca cagaccatga 2821 ttttgaagct aaccaaaaca caaagttcac cccagtcggt gtcatccaag atggtggcac 2881 cacccaccga aatgaacccc agcagtgggt gctcccaagt tactcaggca gaaacactca 2941 taatgtgcat ctggcccccg ctgtagcccc cacttttccg ggtgagcaac ttctcttctt 3001 caggtccacc atgcccggat gcagcgggta ccccaacatg gatttggact gtctgctccc 3061 ccaggaatgg gtgcagtact tctaccaaga ggcagcccca gcacaatctg atgtggctct 3121 gctaagattt gtgaatccag acacaggtag ggttttgttt gagtgtaagc ttcataaatc 3181 aggctatgtt acagtggctc acactggcca atatgatttg gttattcccc ccaatggtta 3241 ttttaggttt gattcctggg tcaaccagtt ttacacgctt gcccccatgg gaaatggaac 3301 ggggcgtaga cgtgcagtat aatggctgga gctttctttg ctggattggc atctgatgtc 3361 cttggctctg gacttggttc ccttatcaat gctggggctg gggccatcaa ccaaaaagtt 3421 gagtttgaaa ataacaggaa attgcaacaa gcatccttcc aatttagcag caatctacaa 3481 caggcttcct ttcaacatga caaagagatg ctccaagcac aaattgaggc caccaaaaag 3541 ctacaacagg aaatgatgaa agttaagcag gcaatgctcc tagagggtgg gttctctgag 3601 acagatgcag cccgcggggc aatcaacgcc cccataacaa aagctttgga ctggagcggg 3661 acaaggtact gggctcccga tgctaggact acaacataca atgcaggccg cttttccacc 3721 cctcaaccat cgggggcact gccagggaga gctaatctta gggatgctgt ccctgctcgg 3781 ggttcctcca gcaaatcttc taacccttct actgctactt ctgtgtactc aaatcaaact 3841 acttcaacga gacttggttc tacagctggt tctggcacca gtgtctcgag cttcccgtca 3901 actgcaagga ctaggagctg ggttgaggat caaagtagga atttgtcacc tttcatgagg 3961 ggggcccaca acatatcgtt tgtcacccca ccatctagca gatcctctag ccaaggcaca 4021 gtctcaaccg tgcctaaagg ggttttggac tcctggactg gcgctttcaa cacgcgcagg 4081 cagccactct tcgctcacat tcgtaagcga ggggagtcac g //