LOCUS MN227770 7550 bp RNA linear VRL 03-AUG-2019 DEFINITION Norovirus GIX strain Pulaski0185 isolate Hu/US/2017/GII.P15-GIX.1/Pulaski0185, complete genome. ACCESSION MN227770 VERSION MN227770.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7550) AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and Chhabra,P. TITLE Direct Submission JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7550 /organism="Norovirus GIX" /mol_type="genomic RNA" /strain="Pulaski0185" /isolate="Hu/US/2017/GII.P15-GIX.1/Pulaski0185" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA" /collection_date="14-Dec-2017" /note="genotype: GIX.1-GII.P15" gene 5..5101 /gene="ORF1" CDS 5..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QDR47999.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVRFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDIAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6749 /gene="ORF2" CDS 5082..6749 /gene="ORF2" /codon_start=1 /product="VP1" /protein_id="QDR48000.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSSRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="ORF3" CDS 6749..7480 /gene="ORF3" /codon_start=1 /product="VP2" /protein_id="QDR48001.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHHVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 gtgaatgaag atggcgtcga atgacgtcgt tactgccctt ggcagccaga aagctaccaa 61 tgacagctat agcacacccc cccccaacaa ggaggaggct agtgtgcttg ccaacgtcaa 121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat 181 acaaaaaccg ccgatcgttg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc 241 aaatggtgag gacgcagtcc gcttcgtgaa ggaaacggag accatcaagg gactaccaga 301 tttgtccacc gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga 361 gagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg 421 tgagttctat cactactcca tatacgtgga caatggcaag gcccttggtg ttcacaaacc 481 accagcagca attagcctag caacgataga tttgacacct atatcgttgt actggagacc 541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa 601 gtttccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattca tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta 721 ccaatcctgg aataggaaac cccttccaac tgtggatgat ggcaagatca agaaggtcgc 781 gaatgcagtt ctgtgcgccc taggatcact tttctccaag cccattaaag acctccttgg 841 taaattgaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg 901 tgtggtggag acagttattc ttgcagcaga gctcttcaat gtcttttgga ctccacctga 961 tgtctccaac ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatat 1021 tgctgtggag ctcgttcctg ttatcatggg aggcattggt atggtgttgg ggttcacagc 1081 tgagaagata gggcgtatgt tatcatctgc agcatccact ctcagggctt gtaaggacct 1141 tggcaattac gccttagaca tcctgaaatt agtcatgaag tggtttttcc ctaaaaagga 1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctgtccttg acatggaagc 1261 aattggaaac aaccacctca caacactgct caaagacaaa gatagcttga gcgcctacat 1321 gaagacctta gacatggagg aggagaaggc taggaggctc tccactaaat catcatcacc 1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gccgccgcaa ggtcactcct 1441 acacaaagcc aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg 1501 aagacccggc atcgggaaga catatctggc tagacagctt gccaaatcga ttgcaaacag 1561 catgagtggt gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc 1621 ttataggggt gaaagagttg tcctatggga tgactatggc atgggaaata caatcaaaga 1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtt accctcaatt gtgacaggat 1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa 1801 ccccgctccc ctcgattatg tcaattttga ggcttgctgt aggcgaattg acttccttgt 1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat 1921 gtggcgtgat cattttaaag ctgactcgtc acacataaag ttgtcactag ccccacaggg 1981 tggctttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct 2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact 2101 acagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa 2161 actagcagct gacaacaagt atagctttgt ggagacaatg aaagtcggtg cagtcctcaa 2221 gaacgtaaaa actctggaag atctgaagtc tgccctcaag ggagtcaaat tcaaagagtg 2281 tgaaataatt tacaaggggg ccaagtatag agtcgcctcg gatggctgtg gcagtgtctc 2341 agtttccaag atcaaggatg ttgtgtcgca gacagccaat gaagtgcaca cagcgctcct 2401 gagattgagg caagcccggg ccaggtatta catcagctgc ttccaagacc tcatatacac 2461 cctaatacag gttgctggag cctcatttgt ggtgcatagg atctcaaaga gattctcatg 2521 ggaccgctgg atcaagccca gtgatagccc tcaggaggaa gaacaaccca gcagtgaggt 2581 ggccacaggg agatgggaaa ttgagccaaa agacacagac cctgaaggca aaaagggtaa 2641 aaataagaaa ggaaggggaa ggaaacacac agctttctct agtaagggtc ttagtgatga 2701 agagtatgat gagttcaaaa gaatcagaga ggaaaagaac ggcaaatact ccatagaaga 2761 atacctccag gaccgtgaca gattttatga ggaagtggca gttgcaaggg caacggaaga 2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa 2881 gcagaggaag gaggagcgag gcgtcctagg gctggttact ggttcagaaa tcaggaagag 2941 aagaccagat gactttcagc ctaaaggcaa cttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgaa aagctggagt ttgaggcccc tccaagcgtg tggtcacgta tcgtacccct 3061 cggcactggc tggggtttct gggtctcctc caacctcctc ataacaacga cacacgttct 3121 gccaaaagga ttgaaggagc tgttcggggt tgacatcaaa caagtccaga tacacaagtc 3181 aggtgagttc tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggggcccctg aaggcacggt gtgttccatc cttgtcaaaa gaccgactgg 3301 agagatgata ccacttgcag tgaggatggg cacccatgct tccatgaaaa tccagggtag 3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt 3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt 3481 ggtggctggg gttcacactg cagctgcgcg gggtggcaac actgtgatct gtgccacgca 3541 aggagctgat ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc 3601 cccaatactt ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcgatc 3661 ctcccctgat gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaggaccc 3721 aagggttgag aagggcccgt cgcttcagca ggtcatgaga gaacaactta aacctttcac 3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat 3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc 3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg 3961 gaatggtgaa tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta 4021 tgaacaggca aaacacatga gccccgttta cactgcagcc ctcaaagatg agctggtcaa 4081 aactgataag atttataaga aaataaagaa gaggctgctg tggggttctg atctgggtac 4141 catggtcagg tgtgccaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt 4201 gatgttaccc tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa 4261 acattcaaaa tacagatatc actatgatgc agattactcc agatgggatt ccacacaaca 4321 aaggagcatc ttatctgctg ccatggaggt tatggtgaag ttctcagctg aaccagagct 4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgattttgt 4441 ggtgtcagtc caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat 4501 agcacattgg atcattaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt 4561 gatccaagct cattcatgct tctctttcta tggtgatgat gagatagtta gcacagacat 4621 caacttagac ccagcaaagc taaccttaaa actcagggaa tatgggttgg tccccaccag 4681 accagacaag actgaaggcc cattagtcat cacagaggac ctccatgggt tgaccttcct 4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattagatc aggattcaat 4801 cttaaggcaa ctctattgga ctagaggacc caaccatgag aacccctacg aatgcatggt 4861 cccacactca cagcgcgcaa cccagttaat ggcgctgttg ggtgaggcat cattgcacgg 4921 cccccagttc tacaagaaag tcagcaagat ggttatcaat gaaattaaga gtggtggtct 4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta 5221 atataattga cccctggatt agaatgaatt ttgtacaagc cccggccggt gagttcactg 5281 tttccccccg gaacgcaccg ggtgaggtgc ttattgattt ggaattagga ccagagttaa 5341 atccctatct caatcacctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc 5461 ccagcttccc aacccatggc atttctgcag cacaggctac tatgttgcca catgtgattg 5521 tggatgtcag gcagctggag cctgttcggc tccctcttcc tgatgtcagg aatgtgatgt 5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggtgcg ggtgatgatg ttttcactgt ctcatgtcgt gtgctaacaa 5701 ggccctcacc agattttgat tttattttct tggtcccccc ctctgtagag agtaagctga 5761 aacagtttac ccttccaaac ctgcagccaa atgaaatgac caattcaaga tttcccactg 5821 gtatcacaca actctacacc agtccaaata ccaatttggt tgtccagttc caaaatggca 5881 ggtgtctgct tgatggcaca cttctcggca ccacccctgt tagagctgct gacatctgca 5941 gtttcagagg agtcacctca actgaagttg atgcaactga cagttccaga gtggcagggt 6001 cgcatagaat tatggtgcag ctcaaggagc cagatggaga ggagttttca cctacaggtc 6061 ccaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc 6121 aaagaaacac tggcggggct gggcagaatt ccaacagagc ccacttcgca tacttttaca 6181 ctagaaaccc tacatttgca ccaggcatag ggacagttgt gttttctttt gatactactg 6241 attttcagaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt taatcaattt tctctaccat attataatgg atcactcggt gcagtggatg 6361 ctgggaagct agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta 6421 gagggaatat tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc 6481 aggaatggat cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc 6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg 6601 gattcatcac aattaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct 6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg 6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctc ggcagcggtt tgtcttcact aatcggtgcc ggtgccaatg ccataaatca 6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga 6901 tatgctcaac tcacaggtgg aagccacaaa gcacttacaa agggagatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa 7021 cgcccctatg acacaaatct tggattggaa tggcaccaga tactgggccc cgggtgcgat 7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcataggc ctattcccaa 7141 tgttgtgcac aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc 7201 ttctctctcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtgcttc 7261 tagaacaagg gactgggtgt ctgaacagca aagactcagc cctttcatga gaggctctct 7321 tcacactgca tatgtgactc ctccctcaag ctctgcctct tcagtaagct ctgtttctac 7381 agtcccacac catgttttgg actcatggac cccttctttt aacaccaaac atttaccttt 7441 gtttgctcat gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat 7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcatta // LOCUS MN227771 7547 bp RNA linear VRL 03-AUG-2019 DEFINITION Norovirus GIX strain Bradford0309 isolate Hu/US/2017/GII.P15-GIX.1/Bradford0309, complete genome. ACCESSION MN227771 VERSION MN227771.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7547) AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and Chhabra,P. TITLE Direct Submission JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7547 /organism="Norovirus GIX" /mol_type="genomic RNA" /strain="Bradford0309" /isolate="Hu/US/2017/GII.P15-GIX.1/Bradford0309" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA" /collection_date="27-Dec-2017" /note="genotype: GIX.1-GII.P15" gene 4..5100 /gene="ORF1" CDS 4..5100 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QDR48002.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLFT VKNESEHSPYTVPPLSEREHRSATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPCLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPIIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 4..1005 /gene="ORF1" /product="p48" mat_peptide 1006..2103 /gene="ORF1" /product="NTPase" mat_peptide 2104..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3024 /gene="ORF1" /product="VPg" mat_peptide 3025..3567 /gene="ORF1" /product="Pro" mat_peptide 3568..5097 /gene="ORF1" /product="RdRp" gene 5081..6748 /gene="ORF2" CDS 5081..6748 /gene="ORF2" /codon_start=1 /product="VP1" /protein_id="QDR48003.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6748..7479 /gene="ORF3" CDS 6748..7479 /gene="ORF3" /codon_start=1 /product="VP2" /protein_id="QDR48004.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 tgaatgaaga tggcgtcgaa tgacgtcgtt actgcccttg gcagccagaa agctaccaat 61 gacagctata gcacacctcc ccccaacaag gaggaggcta gtgtgcttgc caacgttaaa 121 gttggcttta aaaagatcct cggggccgtc cctaaggctc cgaaacagca tggcagcata 181 caaaaaccgc cgatcgtcga gatcgatggt gtggccatgc gtgtaccctc tcccccccca 241 aacggtgagg acgcagtcca cttcgtgaag gaaacggaga ccatcaaggg actgccagat 301 ttgttcaccg tgaagaacga atctgaacac tccccgtaca cagtcccccc gttgagtgag 361 agggagcaca ggtcagcaac agagccattg cccggcacta tacttgagat gtgggatggt 421 gagttctatc actactccat atacgtggac aatggcaagg cccttggtgt tcacaaacca 481 ccagcagcaa ttagcctagc aacgatagat ttaacaccta tatcgttgta ctggagaccg 541 gtttacacac cgccgtgcct tgttcaccca gagacgctca agggactggc tggcgagaag 601 ttcccctaca cggccttcag caacaactgc tacaacttct gttgctgggt tctggacctc 661 aatgattcgt ggttgaaccg gagatccata actagaacaa ctggattctt caaaccctac 721 caatcctgga ataggaagcc ccttccaact gtagatgatg gcaagatcaa gaaggtcgcg 781 aatgcagttc tgtgtgccct aggatcactt ttctccaagc ccattaagga cctccttggc 841 aaattaaaac ccctcaatct cctaaacttg cttgcatcat gtgactggac ctttgctggt 901 gtggtggaga cagtcattct tgcagcagag ctcttcaatg tcttttggac tccacctgat 961 gtctccaact tcattgcttc tataattggc gacttcgaga tgcaaggacc agaggatctt 1021 gctgtggagc ttgtccctat tattatggga ggcattggta tggtgttagg gtttacagct 1081 gagaagatag ggcgtatgtt atcatctgca gcatccaccc tcagggcttg taaggacctt 1141 ggcaattacg ccttagacat cctaaaacta gtcatgaagt ggtttttccc taaaaaggag 1201 gaaaaggccg agatggaaac cctgagggcc attgaggacg ctgtccttga catggaggca 1261 attggaaaca accacctcac aacactgctc aaagacaagg atagcttgag cgcctacatg 1321 aagaccttag acatggagga ggagaaggcc aggaggctct ccactaaatc atcatcaccc 1381 gacattgttg gcaccatcaa cgcgatcctc gcacgcattg ctgccgcaag atcactccta 1441 cacaaagcca aagaggaaat gttcagtcga gcgaggcctg ttgtagttat ggtatctgga 1501 agacccggca tcgggaagac atatctggct agacagcttg ccaaatcgat tgcaaacagc 1561 atgagtggtg atcagagagt gggactcgtc ccccgcaatg gggttgacca ctgggatgcc 1621 tataggggtg aaagagttgt cctatgggat gactatggta tgggaaatac aatcaaagat 1681 gccctgaccc tacaagagtt ggctgacacc tgcccagtta ccctcaactg tgacaggatc 1741 gaaaacaagg ggaagatgtt tgacagtgat gtcatcataa taacaaccaa tcttgtcaac 1801 cccgctcccc tcgattatgt taattttgag gcttgctgta ggcgaattga cttccttgtt 1861 tatgccgagg caccggacat tgagaaagtc aaaaaggatt tccctggaca acctgacatg 1921 tggcgtgacc attttaaagc tgactcgtca cacataaagt tatcactagc cccacagggt 1981 ggttttgaca agaacggaaa cacccctcac gggaagggca ccatgaaaac tctcacgcta 2041 cactcactca ccgcacgtgt gatgggttta gtgtgtgaga ggaaggatga gttccaactg 2101 cagggtgatg aattacaggt ttataacttt gacacaaaca aggtctctgc atttagaaaa 2161 ctagcagctg acaacaagta cagttttgtg gagacaatga aagttggtgc agtcctcaag 2221 aacgtaaaaa ccctggaaga tctgaaatct gccctcaagg gagttaaatt caaagagtgt 2281 gaaataattt acaagggggc caagtataga gttgcctcgg atggttgtgg cagtgtctca 2341 gtttccaaga tcaaggatgt tgtgtcgcag acagccaatg aagtgcacac agcgctcctg 2401 agattgaggc aagcccgggc caggtattac atcagctgct tccaagatct catatacacc 2461 ctaatacagg ttgctggagc ctcatttgtg gtgcatagaa tctcaaagag attctcatgg 2521 gaccgctgga tcaaacccag tgatagccct caggaggaag aacaacccag cagtgaggtg 2581 gccacaggga gatgggaaat tgagccaaaa gacacagacc ctgaaggcaa aaagggtaaa 2641 aacaagaagg gaaggggaag gaaacacacg gctttctcta gtaagggtct tagtgatgaa 2701 gagtatgatg agttcaaaag aattagagag gagaagaacg gcaaatactc catagaagaa 2761 tacctccagg accgtgacag attttacgag gaagtggcag ttgcaagggc aacggaagag 2821 gacttctgtg aggaagaagt ggcaaagatc agacagagaa tcttcaggcc cacaaagaag 2881 cagaggaagg aggagcgggg cgtcctaggg ctggtcactg gttcagaaat caggaagaga 2941 agaccagatg acttccagcc taaaggtaac ttgtgggctg atgacaccag gagcgtggac 3001 tacaacgaaa agctggagtt tgaggcccct ccgagcgtgt ggtcacgtat cgtacccctc 3061 ggcactggct ggggtttctg ggtctcctcc aaccttctca taacaacaac acacgtcctg 3121 ccaaaaggat tgaaggagct gttcggggtt gatatcaagc aagtccagat acataagtca 3181 ggtgagttct gcaggttcag gtttccaaga ccaatcagac cagatgtcac aggcctcatc 3241 cttgaagaag gggcccctga aggcacggtg tgttctatcc ttgtcaaaag accgactgga 3301 gagatgatac cacttgcagt gaggatgggc acccacgctt ccatgaaaat ccagggtaga 3361 acggttggtg gtcaaatggg catgttgctc acaggagcaa atgccaaaaa catggacttg 3421 ggcacgaacc ctggtgattg tggatgcccg tacattttta agaggggcaa tgacattgtg 3481 gtagctgggg tccacactgc agctgcacgg ggtggcaaca ctgtgatctg tgccacgcaa 3541 ggagctgacg gagaggccgt ccttgaagga ggagaagaca aagggacata ctgtggtgcc 3601 ccaatacttg gactcgggaa ggcccccaaa ctcagcacca agacaaagtt ctggcgatcc 3661 tcccctgatg cgcttccccc gggaacgtat gagccagcat acctaggtgg aaaggaccca 3721 agggttgaga agggcccgtc actccagcag gtcatgagag aacaacttaa acctttcacc 3781 gaacccagag gaaaaccccc gaaacccaac gttcttgatg aggcaaagaa aactgtgatg 3841 aacgtgttgg agcagactat aaaccctgcc aaaccctggt catactccca ggcatgtgct 3901 tcgcttgaca agacaacttc aagtggtagc ccgcaccacc tgagaaagaa tgatcattgg 3961 aatggtgaat cttttaccgg tcctttggcc gaccaagctt caaaagcaaa cctaatgtat 4021 gagcaggcaa aacacatgag ccccgtttac actgcggccc tcaaagatga actggtcaag 4081 actgataaga tttacaagaa aataaagaag aggctgctgt ggggttctga cctgggtacc 4141 atggtcaggt gtgctagggc ttttggtggg ttgatggata gcatgaaaga gagttgtgtg 4201 atgttaccct gcagagttgg catgaacatg aatgaagatg gaccaatcat ttttgacaaa 4261 catgcaaagt acaaatatca ctatgatgca gattactcca gatgggattc cacacaacaa 4321 aggagcatct tatctgctgc catggaggtt atggtgaagt tctcagctga accggaactg 4381 gcacaagtgg tcgctgaaga cttgctcgcc ccaagccaac tcgacgtggg cgactttgtg 4441 gtgtcagtcc aagaaggtct cccctcaggt gttccgtgca cttcccaatg gaactccata 4501 gcacattgga tcatcaccct tagtgcaatg gcagaagttt ctggtctctc cccagatgtg 4561 atccaagctc actcatgctt ctctttctat ggtgatgatg agatagttag tacagacatc 4621 aacttggacc cagcaaagct aaccttaaaa ctcagggaat atggattggt ccccaccaga 4681 ccagacaaaa ctgaaggccc attagtcatc acagaggacc tccatgggtt gaccttccta 4741 cgcagacaca tcacacgaga tcctgctgga tggtttggaa aattagacca ggattcaatc 4801 ttaaggcaac tctattggac tagaggaccc aaccatgaga acccctacga gtgcatggtc 4861 ccacactcac agcgcgcaac ccagttaatg gcgctgctgg gtgaggcatc attgcacggt 4921 ccccagttct acaagaaagt cagcaaaatg gttatcaatg aaattaagag tggtggtctg 4981 gaattttacg tgcccagaca ggaggccatg ttcagatgga tgagattctc tgacctcagc 5041 acatgggagg gcgatcgcaa tctggctccc gacggtgtga atgaggatgg cgtcgagtga 5101 cgcgcccgtt tctggcaccg atggtgcggc aggactcgtc ccagagagtc aacaagaagt 5161 cttgccttta gagcccgtcg cgggagttca gctggctgct cccgtagcag ggcaaagtaa 5221 tataattgac ccctggatta gaatgaattt tgtgcaagcc ccggccggtg agttcactgt 5281 ttcccctcgg aacgcaccgg gtgaggtgct tattgattta gaattaggac cagaattaaa 5341 tccctatctc aatcaccttg caagaatgta caatgggtat gtgggaggaa tggaggtgga 5401 agttgtcctt gccgggaatg cgttcacggc gggtaagatc ttattcgcgg ctgtgccccc 5461 cagcttccca acccatggca tttctgcagc acaggcaacc atgttgccac atgtgattgt 5521 ggatgtcagg cagctggagc ctgtccggct ccctcttcct gatgttagga atgtgatgtt 5581 ccatttctgt caagaaaata aggagccgcg catgagaatt gtggcaatat tgtacacccc 5641 tctccgcgcc aacggtgcgg gtgatgatgt tttcactgtc tcatgccgtg tgctaacaag 5701 gccctcacca gattttgact ttattttctt ggtccccccc tctgtagaga gtaagttgaa 5761 acaatttacc cttccaaacc tgcagccaaa tgaaatgacc aattcaagat tccccactgg 5821 catcacacaa ctctatacca gtccaaatac caatttggtt gtccagttcc aaaatggcag 5881 gtgtctgctt gatggcacac tcctcggcac tacccctgtc agagctgctg acatctgcag 5941 tttcagagga gtcacctcaa ctgaagttga tgcaactgac agtcccagag tggcagggtc 6001 gcatagaatt atggtgcagc tcaaggagcc agatggagag gagttttcac ccacaggtcc 6061 taaccctgcc cctgttggca ctccagactt tcaagcagcc atatttggca cccttagtca 6121 aagaaacact ggcggggctg ggcagaactc caacagagcc cacttcgcat acttctacac 6181 tagaaacccc acatttgcac caggcatagg gacagttgtg ttttcttttg atactactga 6241 ttttcagaat cgccaaccta ctaaattctc tccttctggt gtgtttgatg atgattcttc 6301 tgaacctttt aatcaatttt ctctaccata ttataatggg tcactcggtg cagtggatgc 6361 tgggaaacta gctccgcctg tagcacccaa ctacccaggt gagcagattc tttattttag 6421 agggaatatt cccttcaaag gtgggtatgg agagggtgaa attgatagct tgcttcccca 6481 ggaatggatc acccactttt atgcagagca ggctcctaca caaggtgacg cagccctgct 6541 gcgttactac aaccctgaca ctggcagagt cctctttgag tgcaaactcc accgcgaggg 6601 attcatcaca atcaattaca cagggtctaa tgctcttgct gtaccagtca atggagtctt 6661 caggtttgag ggctgggtta acaaattcta cacactgacc cccatgggaa atggcaacgg 6721 ccgcaggggt agaagaaggg agttataatg gctggagctt tctttgcagg tcttgcttct 6781 gatgttctcg gcagcggttt gtcttcactt atcggtgccg gtgctaatgc cataaatcaa 6841 aaggttgaat atgattacaa taggcacttg cagtcagctt ctttccaaca tgataaggat 6901 atgctcaact cacaggtgga agccacaaag cacttacaaa gggagatgat ggccatcaag 6961 gaaggcatgc tgctcaaggg tgggttctcc cccactgatg cagcaagagg agctgtcaac 7021 gcccctatga cacaaatctt ggattggaat ggcaccaggt actgggcccc gggtgcaatg 7081 aaaaccacgg cttactcagg ccgttttgtt agccaatcca ctcataggcc tattcccaat 7141 gttgttcaca agagtgatgg acccatacac caaactgggt caaccacagg gtccatttct 7201 tctctctcca catcatccac ccgtgttcca tcatctacat cctcatctag tagtgcttct 7261 agaacaaggg actgggtgtc tgaacagcag agactcagcc ctttcatgag aggttctctt 7321 cacactgcat atgtgactcc tccctcaagc tctgcctctt cagtgagctc tgtttctaca 7381 gtcccacact atgttttaga ttcatggacc ccttctttta acactaaaca tctacctttg 7441 tttgctcatg ttaggaaaag gggacaatct caagtttaat ctaccactca tggtttgatt 7501 gatttgtttt gtaattagtg aaatgttgat tctttctaat tcgacat // LOCUS MN227772 7550 bp RNA linear VRL 03-AUG-2019 DEFINITION Norovirus GIX strain Barry0457 isolate Hu/US/2017/GII.P15-GIX.1/Barry0457, complete genome. ACCESSION MN227772 VERSION MN227772.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7550) AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and Chhabra,P. TITLE Direct Submission JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7550 /organism="Norovirus GIX" /mol_type="genomic RNA" /strain="Barry0457" /isolate="Hu/US/2017/GII.P15-GIX.1/Barry0457" /isolation_source="vomitus" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA" /collection_date="14-Dec-2017" /note="genotype: GIX.1-GII.P15" gene 5..5101 /gene="ORF1" CDS 5..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QDR48005.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRSATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNIFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPIGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6749 /gene="ORF2" CDS 5082..6749 /gene="ORF2" /codon_start=1 /product="VP1" /protein_id="QDR48006.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVYDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="ORF3" CDS 6749..7480 /gene="ORF3" /codon_start=1 /product="VP2" /protein_id="QDR48007.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHKPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 gtgaatgaag atggcgtcga atgacgtcgt tactgccctt ggcagccaaa aagctaccaa 61 tgacagctat agcacacctc cccctaacaa ggaggaggct agtgtgcttg ccaacgttaa 121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat 181 acaaaaaccg ccgatcgtcg agatcgatgg cgtggccatg cgtgtaccct ctcccccccc 241 aaacggtgag gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga 301 tctgtccacc gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga 361 gagggagcac aggtcagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg 421 tgagttctac cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc 481 accagcagca attagcctag caacgataga tttaacacct atatcgttgt actggaggcc 541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa 601 gttcccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgactcg tggttgaacc ggagatccat aactagaaca actggcttct tcaaacccta 721 ccaatcctgg aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc 781 gaatgcagtt ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg 841 caaattaaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg 901 cgtggtggaa acagtcattc ttgctgcaga gctcttcaat atcttttgga ctccacctga 961 tgtctccaac ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct 1021 tgctgtggag cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc 1081 tgagaagata gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct 1141 tggcaattac gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga 1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctgtccttg acatggaggc 1261 aattggaaac aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctacat 1321 gaagaccttg gacatggagg aggagaaggc caggaggctc tccactaaat catcatcacc 1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct 1441 acacaaagcc aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg 1501 aagacccggc atcgggaaga catatctggc tagacagctt gccaaatcga ttgcgaacag 1561 catgagtggt gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc 1621 ctataggggt gaaagagttg tcctatggga tgactacggc atgggaaaca caatcaaaga 1681 tgccctgacc ctgcaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat 1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa 1801 ccccgctccc ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt 1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat 1921 gtggcgtgac cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg 1981 tggctttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct 2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact 2101 gcagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa 2161 actagcagct gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa 2221 gaatgtaaaa accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg 2281 tgaaataatt tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc 2341 agtttccaag atcaaggatg ttgtgtcgca gacatccaac gaagtgcaca cagcgctcct 2401 gagattgagg caagcccggg ccaggtatta catcagctgc ttccaagacc tcatatacac 2461 cctaatacag gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg 2521 ggaccgctgg atcaaaccca gtgacagccc tcaggaggaa gaacaaccca gcagtgaggt 2581 ggccacaggg agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa 2641 aaacaagaag ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga 2701 agagtatgat gagttcaaaa gaatcagaga ggagaagaac ggcaaatact ccatagaaga 2761 atacctccag gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga 2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa 2881 gcagaggaag gaagagcgtg gcgtcctagg gctggtcact ggttcagaaa tcaggaagag 2941 aagaccagat gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgaa aagctggagt ttgaggcccc tccgagcgtg tggtcacgca tcgtacccat 3061 cggcactggc tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct 3121 gccaaaagga ttgaaggagc tgttcggggt tgatatcaaa caagtccaga tacacaagtc 3181 aggtgagttc tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggggcccctg aaggtacggt gtgttctatc cttgtcaaaa gaccgactgg 3301 agagatgata ccacttgcag tgaggatggg cacccacgct tccatgaaaa tccagggtag 3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aacgccaaaa acatggattt 3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt 3481 ggtagctggg gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca 3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc 3601 cccaatactt ggactcggga aggctcccaa actcagtacc aagacaaagt tctggcgatc 3661 ctcccctgat gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaggaccc 3721 aagggttgag aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac 3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat 3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc 3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg 3961 gaatggtgaa tcttttaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta 4021 tgaacaggca aaacacatga gccccgttta cactgcggcc cttaaagatg aactggtcaa 4081 gactgataag atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac 4141 catggtcagg tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt 4201 gatgttgccc tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa 4261 acatgcaaag tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca 4321 aaggagcatc ttatctgctg ccatggaggt tatggtgaag ttctcagctg aaccggaact 4381 ggcacaagtg gtcgctgaag acttgctcgc cccgagccaa ctcgacgtgg gcgactttgt 4441 ggtgtcagtc caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat 4501 agcacattgg atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt 4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat 4621 caacttggac ccagcaaagc taaccttaaa actcagggaa tatggattgg tccccaccag 4681 accagacaaa actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct 4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattggacc aggattcaat 4801 cttgaggcaa ctctattgga ctagaggacc caaccatgaa aacccctacg agtgcatggt 4861 cccacactca cagcgcgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg 4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct 4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagtac agctggctgc tcccgtagca gggcaaagta 5221 atataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg 5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa 5341 atccctatct caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc 5461 ccagcttccc aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg 5521 tggatgtcag gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt 5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctaacaa 5701 ggccctcacc agattttgac tttattttct tggtcccccc ctctgtagag agtaagttga 5761 aacagtttac ccttccaaac ctgcagccaa atgaaatgac taattcaaga ttccccactg 5821 gtatcacaca actctacacc agtccaaata ccaatttggt tgtccagttc caaaatggca 5881 ggtgtctgct tgatggtaca ctcctcggca ccacccctgt cagagctgct gacatctgca 5941 gtttcagagg agtcacctca actgaagttg atgcaactga cagccccaga gtggcaggat 6001 cccatagaat tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc 6061 ctaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc 6121 aaagaaacac tggcggggct gggcagaact ccaacagagc ccacttcgca tacttctaca 6181 ctagaaaccc cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg 6241 attttcaaaa tcgccaacct actaaattct ctccttctgg tgtgtatgat gatgattctt 6301 ctgaaccttt taatcaattt tctctaccat attataatgg atcactcggt gcagtggatg 6361 ctggaaaact agctcctcct gtagcaccca actacccagg tgagcagatt ctctatttta 6421 gagggaatat tcccttcaaa ggtgggtatg gggagggtga aattgatagc ttgcttcccc 6481 aggagtggat cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc 6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg 6601 gattcatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct 6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaacg 6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctc ggcagcggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaatca 6841 aaaggttgaa tatgattaca atagacactt gcagtctgct tctttccaac atgataagga 6901 tatgctcaac tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa 7021 cgcccctatg acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat 7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcacaagc ctattcccaa 7141 tgttgttcac aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc 7201 ttctctctcc acatcatcca cccatgttcc atcatccaca tcctcatcta gtagtgcttc 7261 tagaacaagg gactgggtgt ctgaacagca aagactcagc cctttcatga gaggctctct 7321 tcacactgca tatgtgactc ctccttcaag ctctgcctcc tcagtaagct ctgtttctac 7381 agtcccacac tatgttttag attcatggac tccttctttt aacactaaac atctaccttt 7441 gtttgctcat gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat 7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcattt // LOCUS MN227773 7547 bp RNA linear VRL 03-AUG-2019 DEFINITION Norovirus GIX strain Barry0458 isolate Hu/US/2017/GII.P15-GIX.1/Barry0458, complete genome. ACCESSION MN227773 VERSION MN227773.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7547) AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and Chhabra,P. TITLE Direct Submission JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7547 /organism="Norovirus GIX" /mol_type="genomic RNA" /strain="Barry0458" /isolate="Hu/US/2017/GII.P15-GIX.1/Barry0458" /isolation_source="vomitus" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA" /collection_date="15-Dec-2017" /note="genotype: GIX.1-GII.P15" gene 2..5098 /gene="ORF1" CDS 2..5098 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QDR48008.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRSATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNIFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPIGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWITTLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 2..1003 /gene="ORF1" /product="p48" mat_peptide 1004..2101 /gene="ORF1" /product="NTPase" mat_peptide 2102..2623 /gene="ORF1" /product="p22" mat_peptide 2624..3022 /gene="ORF1" /product="VPg" mat_peptide 3023..3565 /gene="ORF1" /product="Pro" mat_peptide 3566..5095 /gene="ORF1" /product="RdRp" gene 5079..6746 /gene="ORF2" CDS 5079..6746 /gene="ORF2" /codon_start=1 /product="VP1" /protein_id="QDR48009.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVYDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6746..7477 /gene="ORF3" CDS 6746..7477 /gene="ORF3" /codon_start=1 /product="VP2" /protein_id="QDR48010.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHKPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 aatgaagatg gcgtcgaatg acgtcgttac tgcccttggc agccaaaaag ctaccaatga 61 cagctatagc acacctcccc ctaacaagga ggaggctagt gtgcttgcca acgttaaagt 121 tggctttaaa aagatcctcg gggccgtccc taaggctccg aaacagcatg gcagcataca 181 aaaaccgccg atcgtcgaga tcgatggcgt ggccatgcgt gtaccctctc cccccccaaa 241 cggtgaggac gcagtccact tcgtgaagga aacggagacc atcaagggac tgccagatct 301 gtccaccgtg gagaacgagt ctgaacactc tccgtacaca gtccccccgt tgagtgagag 361 ggagcacagg tcagcaacag agccattgcc cggcactata cttgagatgt gggatggtga 421 gttctaccac tactccatat acgtggacaa tggcaaggcc cttggagttc acaaaccacc 481 agcagcaatt agcctagcaa cgatagattt aacacctata tcgttgtact ggaggccggt 541 ttacacaccg ccgtaccttg tccacccaga gacgctcaag ggactggctg gcgaaaagtt 601 cccctacacg gccttcagca acaactgcta caacttctgt tgctgggttc tggacctcaa 661 tgactcgtgg ttgaaccgga gatccataac tagaacaact ggcttcttca aaccctacca 721 atcctggaac aggaagcccc tcccaactgt ggatgatggc aagatcaaga aggtcgcgaa 781 tgcagttctg tgtgccctag gatcactttt ctccaagccc attaaggacc tccttggcaa 841 attaaaaccc ctcaatctcc tgaacttgct tgcatcatgt gactggacct ttgctggcgt 901 ggtggaaaca gtcattcttg ctgcagagct cttcaatatc ttttggactc cacctgatgt 961 ctccaacttc attgcttcca taattggcga cttcgagatg caaggaccag aggatcttgc 1021 tgtggagctt gtccctgtta tcatgggagg cattggtatg gtgttagggt ttacagctga 1081 gaagataggg cgtatgttat catctgcagc atccaccctc agggcttgta aggaccttgg 1141 caattacgcc ttagacatcc tgaaactagt catgaagtgg tttttcccta aaaaggagga 1201 aaaggccgag atggaaaccc tgagggccat tgaggacgct gtccttgaca tggaggcaat 1261 tggaaacaac cacctcacaa cgctgctcaa agacaaagat agcttgagcg cctacatgaa 1321 gaccttggac atggaggagg agaaggccag gaggctctcc actaaatcat catcacccga 1381 cattgttggc accatcaacg cgatcctcgc acgcattgct gccgcaaggt cactcctaca 1441 caaagccaaa gaggaaatgt tcagtcgagc gaggcctgtt gtcgttatgg tgtctggaag 1501 acccggcatc gggaagacat atctggctag acagcttgcc aaatcgattg cgaacagcat 1561 gagtggtgat cagagagtgg gactcgtccc ccgcaatggg gttgaccact gggatgccta 1621 taggggtgaa agagttgtcc tatgggatga ctacggcatg ggaaacacaa tcaaagatgc 1681 cctgaccctg caagagttgg ctgacacctg cccagttacc ctcaactgtg acaggatcga 1741 aaacaagggg aagatgtttg acagtgatgt catcataata acaaccaatc ttgtcaaccc 1801 cgctcccctc gattatgtta attttgaggc ttgctgtagg cgaattgact tccttgttta 1861 tgccgaggca ccggacattg agaaagtcaa aaaggatttc cctggacaac ctgacatgtg 1921 gcgtgaccat tttaaagctg actcgtcaca cataaagtta tcactagccc cacagggtgg 1981 ctttgacaag aacggaaaca cccctcacgg gaagggcacc atgaaaactc tcacgctaca 2041 ctcactcact gcacgtgtga tgggtttagt gtgtgagagg aaggatgagt tccaactgca 2101 gggtgatgaa ctacaggttt ataactttga cacaaacaag gtctctgcat ttagaaaact 2161 agcagctgac aacaagtaca gctttgtgga gacaatgaaa gtcggtgcag tcctcaagaa 2221 tgtaaaaacc ctggaagatc tgaaatctgc cctcaaggga gttaaattca aagagtgtga 2281 aataatttac aagggggcca agtatagagt cgcctcggat ggttgtggca gtgtctcagt 2341 ttccaagatc aaggatgttg tgtcgcagac atccaacgaa gtgcacacag cgctcctgag 2401 attgaggcaa gcccgggcca ggtattacat cagctgcttc caagacctca tatacaccct 2461 aatacaggtt gctggagcct catttgtggt acataggatc tcaaagagat tctcatggga 2521 ccgctggatc aaacccagtg acagccctca ggaggaagaa caacccagca gtgaggtggc 2581 cacagggaga tgggaaattg agccaaaaga cacagatcct gaaggcaaaa agggtaaaaa 2641 caagaaggga aggggaagga aacacacggc tttctctagt aagggtctta gtgatgaaga 2701 gtatgatgag ttcaaaagaa tcagagagga gaagaacggc aaatactcca tagaagaata 2761 cctccaggac cgtgacagat tttacgagga agtggcagtt gcaagggcaa cggaagagga 2821 cttctgtgag gaagaagtgg caaagatcag acagagaatc ttcaggccca caaagaagca 2881 gaggaaggaa gagcgtggcg tcctagggct ggtcactggt tcagaaatca ggaagagaag 2941 accagatgac ttccagccta aaggtaactt gtgggctgat gacaccagga gcgtggacta 3001 caacgaaaag ctggagtttg aggcccctcc gagcgtgtgg tcacgcatcg tacccatcgg 3061 cactggctgg ggtttctggg tctcctccaa ccttctcata acaacaacac atgtcctgcc 3121 aaaaggattg aaggagctgt tcggggttga tatcaaacaa gtccagatac acaagtcagg 3181 tgagttctgc aggttcaggt ttccaagacc aatcagacca gatgtcacag gcctcatcct 3241 tgaagaaggg gcccctgaag gtacggtgtg ttctatcctt gtcaaaagac cgactggaga 3301 gatgatacca cttgcagtga ggatgggcac ccacgcttcc atgaaaatcc agggtagaac 3361 ggttggtggt caaatgggca tgttgctcac aggagcaaac gccaaaaaca tggatttggg 3421 cacgaaccct ggtgattgtg gatgcccgta catttttaag aggggcaatg acattgtggt 3481 agctggggtc cacactgcag ctgcacgggg tggcaacact gtgatctgtg ccacgcaagg 3541 agctgacgga gaggccgtcc ttgaaggagg agaggacaaa gggacgtact gtggtgcccc 3601 aatacttgga ctcgggaagg ctcccaaact cagtaccaag acaaagttct ggcgatcctc 3661 ccctgatgcg cttcccccgg gaacgtatga gccagcatac ctaggtggaa aggacccaag 3721 ggttgagaag ggcccgtcac tccagcaggt catgagagaa caacttaaac ctttcaccga 3781 acccagagga aaacccccaa aacccaacgt tcttgatgag gcaaagaaaa ctgtgatgaa 3841 cgtgttggag cagactataa accctgccaa accctggtca tactcccaag catgtgcttc 3901 gcttgacaag acaacttcaa gtggtagccc gcaccacctg agaaagaatg atcattggaa 3961 tggtgaatct tttaccggtc ctttggccga tcaagcttca aaagcaaacc taatgtatga 4021 acaggcaaaa cacatgagcc ccgtttacac tgcggccctt aaagatgaac tggtcaagac 4081 tgataagatc tacaagaaaa taaagaagag gctgctgtgg ggctctgacc tgggtaccat 4141 ggtcaggtgt gctagggctt ttggtgggtt gatggatagc atgaaagaga gttgtgtgat 4201 gttgccctgc agagttggca tgaacatgaa tgaagatgga ccaatcattt ttgacaaaca 4261 tgcaaagtac aaatatcact atgatgcaga ttactccaga tgggattcca cacaacaaag 4321 gagcatctta tctgctgcca tggaggttat ggtgaagttc tcagctgaac cggaactggc 4381 acaagtggtc gctgaagact tgctcgcccc gagccaactc gacgtgggcg actttgtggt 4441 gtcagtccaa gaaggtctcc cctcaggtgt tccgtgcact tcccaatgga actccatagc 4501 acattggatc accaccctta gtgcaatggc agaagtttct ggtctctccc cagatgtgat 4561 ccaagctcac tcatgcttct ctttctatgg tgatgatgag atagttagca cagacatcaa 4621 cttggaccca gcaaagctaa ccttaaaact cagggaatat ggattggtcc ccaccagacc 4681 agacaaaact gaaggcccat tagtcatcac agaggatctc catggattga cctttctacg 4741 cagacacatc acacgagatc ctgctggatg gtttggaaaa ttggaccagg attcaatctt 4801 gaggcaactc tattggacta gaggacccaa ccatgaaaac ccctacgagt gcatggtccc 4861 acactcacag cgcgcaactc agttaatggc gctgttgggt gaggcatcat tgcacggtcc 4921 ccagttctac aagaaagtca gcaagatggt tatcaatgag attaagagtg gtggtctgga 4981 attttacgtg cccagacagg aggccatgtt cagatggatg agattctctg acctcagcac 5041 gtgggagggc gatcgcaatc tggctcccga cggtgtgaat gaggatggcg tcgagtgacg 5101 cgcccgtttc tggcaccgat ggtgcggcag gactcgtccc agagagtcaa caagaagtct 5161 tgcctttaga gcccgtcgcg ggagtacagc tggctgctcc cgtagcaggg caaagtaata 5221 taattgaccc ctggattaga atgaattttg tgcaagcccc ggccggtgag ttcactgttt 5281 cccctcggaa cgcaccgggt gaggtgctta ttgatttaga attaggacca gaattaaatc 5341 cctatctcaa tcaccttgcg agaatgtaca atgggtatgt gggaggaatg gaggtggaag 5401 ttgtccttgc cgggaatgcg ttcacggcgg gtaagatctt attcgcagct gtgcccccca 5461 gcttcccaac ccatggcatt tctgcagcac aggcaactat gttaccacat gtgattgtgg 5521 atgtcaggca gctggagcct gtccggctcc ctcttcctga tgtcaggaat gtgatgttcc 5581 atttctgtca agaaaataag gagccgcgca tgagaattgt ggcaatattg tacacccctc 5641 tccgtgccaa cggtgcgggt gatgatgtct tcactgtctc atgtcgtgtg ctaacaaggc 5701 cctcaccaga ttttgacttt attttcttgg tccccccctc tgtagagagt aagttgaaac 5761 agtttaccct tccaaacctg cagccaaatg aaatgactaa ttcaagattc cccactggta 5821 tcacacaact ctacaccagt ccaaatacca atttggttgt ccagttccaa aatggcaggt 5881 gtctgcttga tggtacactc ctcggcacca cccctgtcag agctgctgac atctgcagtt 5941 tcagaggagt cacctcaact gaagttgatg caactgacag ccccagagtg gcaggatccc 6001 atagaattat ggtgcagctc aaggagccag atggagagga gttttcaccc acaggtccta 6061 accctgcccc tgttggcact ccagactttc aagcagccat atttggcacc cttagtcaaa 6121 gaaacactgg cggggctggg cagaactcca acagagccca cttcgcatac ttctacacta 6181 gaaaccccac atttgcacca ggtataggga cagttgtgtt ttcttttgat actactgatt 6241 ttcaaaatcg ccaacctact aaattctctc cttctggtgt gtatgatgat gattcttctg 6301 aaccttttaa tcaattttct ctaccatatt ataatggatc actcggtgca gtggatgctg 6361 gaaaactagc tcctcctgta gcacccaact acccaggtga gcagattctc tattttagag 6421 ggaatattcc cttcaaaggt gggtatgggg agggtgaaat tgatagcttg cttccccagg 6481 agtggatcac ccacttttat gcagagcagg ctcctacaca aggtgacgca gccctgctgc 6541 gttactacaa ccctgacact ggcagagtcc tctttgagtg caaactccac cgcgagggat 6601 tcatcacaat caattacaca gggtccaatg ctcttgctgt accagtcaat ggagtcttca 6661 ggtttgaggg ctgggttaac aaattctaca cactgacccc catgggaaat ggcaacggcc 6721 gcaggggtag aagaagggag ttataatggc tggagctttc tttgcaggtc ttgcttctga 6781 tgttctcggc agcggtttgt cttcacttat cggtgccggt gccaatgcca taaatcaaaa 6841 ggttgaatat gattacaata gacacttgca gtctgcttct ttccaacatg ataaggatat 6901 gctcaactca caggtggaag ccacaaagca cttacaaaga gagatgatgg ccatcaagga 6961 aggcatgctg ctcaagggtg ggttctcccc cactgatgca gcaagaggag ctgtcaacgc 7021 ccctatgaca caaattttgg attggaatgg caccagatac tgggccccgg gtgcaatgaa 7081 aaccacggct tactcaggcc gttttgttag ccaatccact cacaagccta ttcccaatgt 7141 tgttcacaag agtgatggac ccatacacca aactgggtca accacagggt ccatttcttc 7201 tctctccaca tcatccaccc atgttccatc atccacatcc tcatctagta gtgcttctag 7261 aacaagggac tgggtgtctg aacagcaaag actcagccct ttcatgagag gctctcttca 7321 cactgcatat gtgactcctc cttcaagctc tgcctcctca gtaagctctg tttctacagt 7381 cccacactat gttttagatt catggactcc ttcttttaac actaaacatc tacctttgtt 7441 tgctcatgtt aggaaaaggg gacaatctca agtttaatct accactcatg gtttgattga 7501 tttgttttgt aattagtgaa atgttgattc tttctaattc ggcatga // LOCUS MN227774 7484 bp RNA linear VRL 03-AUG-2019 DEFINITION Norovirus GIX strain Sevier0098 isolate Hu/US/2017/GII.P15-GIX.1/Sevier0098, complete genome. ACCESSION MN227774 VERSION MN227774.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7484) AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and Chhabra,P. TITLE Direct Submission JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7484 /organism="Norovirus GIX" /mol_type="genomic RNA" /strain="Sevier0098" /isolate="Hu/US/2017/GII.P15-GIX.1/Sevier0098" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA" /collection_date="07-Jul-2018" /note="genotype: GIX.1-GII.P15" gene 1..5097 /gene="ORF1" CDS 1..5097 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QDR48011.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSIQKSPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLSRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIASSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL LRLRQARARFYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTSKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 1..1002 /gene="ORF1" /product="p48" mat_peptide 1003..2100 /gene="ORF1" /product="NTPase" mat_peptide 2101..2622 /gene="ORF1" /product="p22" mat_peptide 2623..3021 /gene="ORF1" /product="VPg" mat_peptide 3022..3564 /gene="ORF1" /product="Pro" mat_peptide 3565..5094 /gene="ORF1" /product="RdRp" gene 5078..6745 /gene="ORF2" CDS 5078..6745 /gene="ORF2" /codon_start=1 /product="VP1" /protein_id="QDR48012.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCMLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFFPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6745..7476 /gene="ORF3" CDS 6745..7476 /gene="ORF3" /codon_start=1 /product="VP2" /protein_id="QDR48013.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atgaagatgg cgtcgaatga cgtcgttact gcccttggca gccagaaagc taccaatgac 61 agctatagca cacctccccc caataaggag gaggctagtg tgcttgccaa cgttaaagtt 121 ggcttcaaaa agatcctcgg ggccgtccct aaggctccga aacagcatgg cagcatacaa 181 aaatcgccga tcgtcgagat cgatggtgtg gccatgcgtg taccttctcc ccccccaaac 241 ggtgaggacg cagtccactt tgtgaaggaa acggagacca tcaagggact gccagatttg 301 tccaccgtgg agaacgaatc tgaacactcc ccgtacacag tccccccgtt gagtgagaga 361 gagcacaggc cagcaacaga accattgccc ggcactatac ttgagatgtg ggatggtgag 421 ttctatcact actccatata cgtggacaat ggcaaggctc ttggtgttca caaaccacca 481 gcagcaatta gcctagcaac gatagattta acacctatat cgttgtactg gagaccggtt 541 tacacaccgc cgtaccttgt ccacccagag acgctcaagg gactggctgg cgaaaagttt 601 ccctacacgg ccttcagcaa caactgctac aacttctgtt gctgggtttt ggacctcaat 661 gattcgtggt tgagccggag atccataact agaacaactg gattcttcaa accctaccaa 721 tcctggaata ggaagcccct tccaactgtg gatgatggca agatcaagaa ggtcgcgaat 781 gcagttctgt gtgccctggg ttcacttttc tccaagccca ttaaggatct ccttggtaaa 841 ttaaaacccc tcaatctcct aaacttgctt gcatcatgtg actggacctt tgctggcgtg 901 gtggagacag tcattcttgc agcagagctc ttcaatgtct tttggacccc acctgatgtc 961 tccaatttca ttgcctctat aattggcgac tttgagatgc aaggaccaga ggatcttgct 1021 gtggagcttg tccctgttat catgggaggc attggtatgg tattagggtt tacagctgag 1081 aagatagggc gcatgttatc atctgcagca tccaccctca gggcttgtaa ggaccttggc 1141 aattacgcct tagacatcct gaaactagtc atgaagtggt tcttccctaa aaaggaggaa 1201 aaggccgaga tggaaaccct gagggccatt gaggacgctg tccttgacat ggaggcaatt 1261 ggaaacaacc acctcacaac actgctcaaa gacaaagata gcttgagcgc ctacatgaag 1321 accttagaca tggaggagga gaaggccagg aggctctcca ctaaatcatc atcacccgac 1381 attgttggca ccatcaacgc gatcctcgca cgcattgctg ccgcaaggtc actcctacac 1441 aaagccaaag aggaaatgtt cagtcgagcg aggcctgttg tcgtcatggt gtctggaaga 1501 cccggcatcg ggaagacata tctggctaga cagcttgcca aatcgattgc aagcagcatg 1561 agtggtgatc agagagtggg actcgtcccc cgcaatgggg ttgaccactg ggatgcctat 1621 aggggtgaaa gagttgtcct atgggatgac tacggcatgg ggaatacaat caaagatgcc 1681 ctgaccctac aagagttggc tgacacctgc ccagtcaccc tcaactgtga caggatcgag 1741 aacaagggga agatgtttga cagtgatgtc atcataataa caaccaatct tgtcaacccc 1801 gctcccctcg attatgttaa ttttgaggct tgctgtaggc gaattgactt ccttgtttat 1861 gccgaggcac cggacattga gaaagtcaaa aaggatttcc ctggacaacc tgacatgtgg 1921 cgtgatcatt ttaaagctga ctcgtcacac ataaagttat cactagcccc acagggtggt 1981 tttgacaaga acggaaacac cccccacggg aagggcacca tgaaaactct cacgctacac 2041 tcactcactg cacgtgtgat gggtttagtg tgtgagagga aggatgagtt ccaactgcag 2101 ggtgatgaac tacaggttta taactttgac acaaacaagg tctctgcatt tagaaaacta 2161 gcagctgaca acaagtacag ctttgtggag acaatgaaag tcggtgcagt cctcaagaac 2221 gtaaaaaccc tggaagatct gaaatctgcc ctcaagggag ttaaatttaa agagtgtgaa 2281 ataatttaca agggggccaa gtatagagtt gcctcagatg gttgtggcag tgtctcagtt 2341 tccaagatca aggatgttgt gtcgcagaca gccaatgaag tgcacacagc gctcctaaga 2401 ttgaggcaag cccgggccag gttttacatc agctgcttcc aagacctcat atacacccta 2461 atacaggttg ctggagcctc atttgtggtg cataggatct caaagagatt ctcatgggac 2521 cgctggatca aacccagtga cagccctcag gaggaagaac aacccagcag tgaggtggcc 2581 acagggaggt gggaaattga gccaaaagac acagaccctg aaggcaaaaa gggtaaaaac 2641 aagaagggaa ggggaaggaa acacacggct ttctctagca agggtcttag tgatgaagag 2701 tatgatgagt tcaaaagaat cagagaggag aagaacggca aatactccat agaagaatac 2761 ctccaggacc gtgacagatt ttacgaggaa gtggcagttg caagggcaac ggaagaggac 2821 ttctgtgagg aagaagtggc aaagatcaga cagagaatct tcaggcccac aaagaagcag 2881 aggaaggagg aacggggcgt cctagggctg gtcactggtt cagaaatcag aaagagaaga 2941 ccagatgact tccagcctaa aggtaacttg tgggctgatg acaccaggag cgtggactac 3001 aacgaaaagc tggagtttga ggcccctccg agcgtgtggt cacgtatcgt acccctcggc 3061 actggctggg gtttctgggt ctcctctaac cttctcataa caacaacaca cgtcctgcca 3121 aaaggattga aggagctgtt cggggttgat atcaaacaag tccagataca taagtcaggt 3181 gagttctgca ggttcaggtt tccaagacca atcagaccag atgttacagg cctcatcctt 3241 gaagaagggg cccctgaagg cacggtgtgt tccatccttg tcaaaagacc gacaggagag 3301 atgataccac ttgcagtgag gatgggcaca cacgcttcca tgaaaatcca gggtagaacg 3361 gttggtggtc aaatgggcat gttgctcaca ggagcaaatg ccaaaaacat ggacttgggc 3421 acgaaccctg gtgattgtgg atgcccgtat atctttaaga ggggcaatga cattgtggtg 3481 gctggggtcc acactgcagc tgcacggggt ggcaacactg tgatctgtgc cacgcaagga 3541 gctgacggag aggccgtcct tgaaggagga gaggacaaag ggacatactg tggtgcccca 3601 atacttggac tcgggaaggc ccccaaactc agcaccaaaa caaagttctg gcgatcctcc 3661 cctgatgcgc ttcccccggg aacgtatgag ccagcatacc taggtggaaa ggacccaagg 3721 gttgaaaagg gcccgtcact ccagcaggtc atgagagaac aacttaaacc tttcaccgaa 3781 cccagaggaa aacccccaaa acccaacgtt cttgatgagg caaagaaaac tgtgatgaac 3841 gtgttggagc agactataaa ccctgccaaa ccctggtcat actcccaagc atgtgcttcg 3901 cttgacaaga caacctcaag tggtagcccg caccacctga gaaagaatga tcattggaat 3961 ggtgaatctt ttaccggtcc tttggccgat caagcttcaa aagcaaacct aatgtatgaa 4021 caggcaaaac acatgagccc cgtttacact gcggccctca aagatgaact ggtcaagact 4081 gataagattt acaagaaaat aaagaagagg ctgctgtggg gttctgacct gggtaccatg 4141 gtcaggtgtg ctagggcttt tggtgggctg atggatagca tgaaagagag ttgtgtgatg 4201 ttgccctgca gagttggcat gaacatgaat gaagatggac caatcatttt tgacaaacat 4261 gcaaagtaca aatatcacta tgatgcagat tactccagat gggattccac acaacaaagg 4321 agcatcttat ctgctgccat ggaggttatg gtgaagttct cagctgaacc ggaactggca 4381 caagtggtcg ctgaagactt gctcgcccca agccaactcg acgtgggcga ctttgtggtg 4441 tcagtccaag aaggtctccc ctcaggtgtt ccgtgcactt cccaatggaa ctccatagca 4501 cattggatca tcacccttag tgcaatggca gaagtttctg gtctctcccc agatgtgatc 4561 caagctcatt catgcttctc tttctatggt gatgatgaga tagttagcac agacatcaac 4621 ttggacccgg caaagctaac ctcaaaactc agggaatatg gattggtccc caccagacca 4681 gacaaaactg aaggcccatt ggtcatcaca gaggacctcc atgggttgac cttcctacgc 4741 aggcacatca cacgagatcc tgctggatgg tttggaaaat tagaccagga ttcaatctta 4801 aggcaactct attggactag aggacccaac catgagaacc cctacgagtg catggtccca 4861 cactcacagc gcgcaaccca gttaatggcg ctgttgggtg aggcatcatt gcacggtccc 4921 cagttctaca agaaagtcag caagatggtt atcaatgaaa ttaagagtgg tggtctggaa 4981 ttttacgtgc ccagacagga ggccatgttc agatggatga gattctctga cctcagcacg 5041 tgggagggcg atcgcaatct ggctcccgac ggtgtgaatg aggatggcgt cgagtgacgc 5101 gcccgtttct ggcaccgatg gtgcggcagg actcgtccca gagagtcaac aagaagtctt 5161 gcctttagag cccgttgcgg gagttcagct ggctgctccc gtagcagggc aaagtaatat 5221 aattgacccc tggattagaa tgaattttgt gcaagccccg gccggtgagt tcactgtttc 5281 cccccgtaac gcaccgggtg aagtgcttat tgatttagaa ttaggaccag aattaaatcc 5341 ctatctcaat caccttgcaa gaatgtacaa tgggtatgtg ggaggaatgg aggtggaagt 5401 tgtccttgcc gggaatgcgt tcacggcggg taagatctta tttgcagctg tgccccccag 5461 cttcccgacc catggcattt ctgcagcaca ggcaaccatg ttaccacatg tgattgtgga 5521 tgtcaggcag ctggagcctg ttcggctccc tcttcctgat gtcaggaatg tgatgttcca 5581 tttctgtcaa gaaaataagg agccgcgcat gagaattgtg gcaatattgt acacccctct 5641 ccgtgccaac ggtgcgggtg atgatgtttt cactgtctca tgtcgtgtgc taacaaggcc 5701 ctcaccagat tttgacttta ttttcttggt ccccccctct gtagagagta agttgaaaca 5761 gtttaccctt ccaaacctgc agccaaatga aatgaccaat tcaagattcc ccactggcat 5821 cacacaactc tacaccagcc caaataccaa tctggttgtc cagttccaaa atggcaggtg 5881 tatgcttgat ggcacactcc tcggcaccac ccccgtcaga gctgctgaca tctgcagttt 5941 tagaggagtt acctcaactg aagttgatgc aactgacagt cccagagtgg cagggtcgca 6001 tagaattatg gtgcagctca aggagccaga tggagaggag ttttcaccca caggtcccaa 6061 ccctgcccct gttggtactc cagacttcca agcagccata tttggcaccc ttagtcaaag 6121 aaacactggc ggggctgggc agaactccaa cagagcccac ttcgcatact tctatactag 6181 gaaccccaca tttgcaccag gcatagggac agttgtgttt tcttttgata ctactgattt 6241 tcagaatcgc cagcctacta aattcttccc ttctggtgtg tttgatgatg attcttctga 6301 accttttaat caattttctc taccatatta taatggatca ctcggtgcag tggatgctgg 6361 gaaactagct ccgcctgtag cacccaacta cccaggtgag cagattcttt attttagagg 6421 gaatattccc ttcaaaggtg ggtatggaga gggtgaaatt gatagcttgc ttcctcagga 6481 gtggatcacc cacttttatg cagagcaggc tcctacacaa ggtgacgcag ccctgctgcg 6541 ttactacaac cctgacactg gcagagtcct ctttgagtgt aaactccacc gcgagggatt 6601 catcacaatc aattacacag ggtccaatgc tcttgctgta ccagtcaatg gagtcttcag 6661 gtttgagggc tgggttaaca aattctacac actgaccccc atgggaaatg gcaatggccg 6721 caggggtaga agaagggagt tataatggct ggagctttct ttgcaggtct tgcttctgat 6781 gttctcggca gtggtttgtc ttcacttatc ggtgccggtg ccaatgccat aaatcaaaag 6841 gttgaatatg attacaatag gcacttgcag tcagcttctt tccaacatga taaggatatg 6901 ctcaactcac aggtggaagc cacaaagcac ttacaaaggg agatgatggc catcaaggaa 6961 ggcatgctgc tcaagggtgg gttctccccc actgatgcag caagaggagc tgtcaacgcc 7021 cctatgacac aaattttgga ttggaatggc accagatact gggccccggg tgcaatgaaa 7081 accacggctt actcaggccg ttttgttagc caatccactc ataggcctat tcccaatgtt 7141 gttcacaaga gtgatggacc catacaccaa actgggtcaa ccacagggtc catttcttct 7201 ctctccacat catccactcg tgttccatca tctacatcct catctagtag tgcttctaga 7261 acaagggatt gggtgtctga acagcaaaga ctcagccctt tcatgagagg ttctcttcac 7321 actgcatatg taactcctcc ctcaagctcc gcctcttcag taagttctgt ttctacagtc 7381 ccacattatg ttttagattc atggaccccc tcttttaaca ctaaacacct acctctgttt 7441 gctcatgtta gaaaaagggg acaatctcaa gtttaatcta ccac // LOCUS MN227775 7545 bp RNA linear VRL 03-AUG-2019 DEFINITION Norovirus GIX strain Nassau0108 isolate Hu/US/2017/GII.P15-GIX.1/Nassau0108, complete genome. ACCESSION MN227775 VERSION MN227775.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7545) AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and Chhabra,P. TITLE Direct Submission JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7545 /organism="Norovirus GIX" /mol_type="genomic RNA" /strain="Nassau0108" /isolate="Hu/US/2017/GII.P15-GIX.1/Nassau0108" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA" /collection_date="18-May-2018" /note="genotype: GIX.1-GII.P15" gene 4..5100 /gene="ORF1" CDS 4..5100 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QDR48014.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPNLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWSFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTVKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS SEVATGRWEIEPKDIDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPIYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 4..1005 /gene="ORF1" /product="p48" mat_peptide 1006..2103 /gene="ORF1" /product="NTPase" mat_peptide 2104..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3024 /gene="ORF1" /product="VPg" mat_peptide 3025..3567 /gene="ORF1" /product="Pro" mat_peptide 3568..5097 /gene="ORF1" /product="RdRp" gene 5081..6748 /gene="ORF2" CDS 5081..6748 /gene="ORF2" /codon_start=1 /product="VP1" /protein_id="QDR48015.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6748..7479 /gene="ORF3" CDS 6748..7479 /gene="ORF3" /codon_start=1 /product="VP2" /protein_id="QDR48016.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGLTHQTGSTTGSISSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPYHVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 tgaatgaaga tggcgtcgaa tgacgtcgtt actgcccttg gcagccagaa agctaccaat 61 gacagctata gcacaccccc ccccaacaag gaggaggcta gtgtgcttgc caacgttaaa 121 gttggcttta aaaagattct tggggccgtc cctaaggctc cgaaacagca tggtaacaca 181 caaaaaccgc cgatcgtcga gatcgatggt gtggccatgc gtgtaccctc tcccccccca 241 aacggtgagg acgcagtcca cttcgtgaag gaaacggaga ccatcaaggg actgccaaat 301 ttgtccaccg tggagaacga atctgaacac tccccgtata cagtcccacc gttgagtgag 361 agggaacaca ggccagcaac agagccattg cccggcacta tacttgagat gtgggatggt 421 gagttctatc actactccat atacgtggac aatggcaagg cccttggtgt tcacaaacca 481 ccagcagcaa ttagcctagc aacgatagat ttaacaccta tatcgttgta ttggaggccg 541 gtttacacac cgccgtacct tgtccaccca gagacgctca agggactggc tggcgaaaag 601 tttccctata cggccttcag caacaactgc tacaacttct gctgctgggt tctggacctc 661 aatgattcat ggttgaaccg gagatccata actagaacaa ctggattctt caaaccctac 721 caatcctgga ataggaaacc ccttccaact gtggatgatg gcaagatcaa gaaggtcgcg 781 aatgcagttc tgtgcgccct aggatcactc ttctctaagc ccattaagga cctccttggg 841 aagttaaaac ccctcaatct cctgaacttg cttgcatcat gtgactggtc ctttgctggc 901 gtggtggaga cagtcattct tgcagcagag ctctttaatg tcttctggac tccacctgat 961 gtctccaact ttattgcctc cataattggc gacttcgaaa tgcaaggacc agaggatctt 1021 gctgtggagc ttgtccctgt tatcatggga ggcattggta tggtgttagg gtttacagct 1081 gagaagatag ggcgtatgtt atcatctgca gcatccactc tcagggcttg taaggatctt 1141 ggtaattacg ccttagacat cctgaaacta gtcatgaagt ggtttttccc taaaaaggag 1201 gaaaaggccg agatggaaac cctgagggcc attgaggacg ctgtccttga catggaggca 1261 attggaaaca accacctcac aacactgctc aaagacaaag atagcttgag cgcctacatg 1321 aagaccttgg acatggagga ggagaaggcc aggaggctct ccactaaatc atcatcaccc 1381 gacattgttg gcaccatcaa cgcgatcctc gcacgcattg ctgccgcaag gtcactccta 1441 cacaaagcca aagaggaaat gttcagtcga gcgaggcctg ttgtcgtcat ggtgtctgga 1501 agacccggca tcgggaagac atatctggct agacagcttg ccaaatcgat tgcaaacagc 1561 atgagtggtg atcagagagt ggggctcgtc ccccgcaatg gggttgacca ctgggatgcc 1621 tataggggtg aaagagttgt cctatgggat gattatggca tgggaaacac aatcaaagat 1681 gccctgaccc tacaagagtt ggctgacacc tgcccagtca ccctcaactg tgacaggatc 1741 gaaaacaagg ggaagatgtt tgacagcgat gtcatcataa taacaaccaa tctcgtcaac 1801 cccgctcccc tcgattatgt caattttgag gcttgctgta ggcgaattga cttccttgtt 1861 tatgccgagg caccggacat tgagaaagtc aaaaaggatt tccctggaca acctgacatg 1921 tggcgtgacc attttaaagc tgactcgtca cacataaagt tatcactagc cccacagggt 1981 ggttttgata agaacggaaa caccccccac gggaagggca ctgtgaaaac tctcacacta 2041 cactcactca ctgcacgtgt gatgggttta gtgtgtgaga ggaaggatga gttccaactg 2101 cagggtgatg aactacaggt ttataacttt gacacaaaca aggtctctgc gttcaggaaa 2161 ctagcagctg acaacaagta cagctttgtg gagacaatga aagtcggtgc agtcctcaag 2221 aacgtaaaaa ctctggaaga tctgaaatct gctctcaagg gagtcaaatt caaagagtgt 2281 gaaataattt acaagggggc caagtataga gttgcctcgg atggttgtgg cagtgtctca 2341 gtctccaaga tcaaggacgt tgtgtcgcag acagccaatg aagtgcacac agcgctcctg 2401 agattgaggc aagcccgggc caggtattac atcagctgct tccaagacct catatacacc 2461 ctaatacagg ttgctggagc ctcattcgtg gtgcatagga tctcaaagag attctcatgg 2521 gaccgctgga tcaaacccag tgatagccct caggaggaag aacaacccag cagtgaggtg 2581 gccactggga gatgggaaat tgagccaaaa gacatagacc ctgaaggcaa aaagggtaaa 2641 aacaaaaagg gaaggggtag gaaacacacg gctttctcta gtaagggtct tagtgatgaa 2701 gagtatgatg agttcaaaag aatcagagag gagaagaacg gcaaatactc catagaagaa 2761 tacctccagg accgtgacag attttacgag gaagtggcag ttgcaagggc aacggaagag 2821 gacttctgtg aggaagaagt ggcaaagatc agacagagaa tcttcaggcc cacaaagaag 2881 cagaggaagg aggagcgagg cgtcctaggg ctggtcactg gttcagaaat caggaagaga 2941 agaccagatg acttccagcc taaaggtaac ttgtgggctg atgacaccag gagcgtggac 3001 tacaacgaaa agctggagtt tgaagctcct ccaagcgtgt ggtcacgtat cgtgcccctc 3061 ggcactggct ggggtttctg ggtctcctcc aaccttctca taacaacaac acacgtcctg 3121 ccaaaagggt tgaaggagct gttcggggtt gatatcaaac aagtccagat acataagtca 3181 ggtgagttct gcaggtttag gtttccaaga ccaatcagac cagatgtcac aggtctcatc 3241 cttgaagaag gagcccctga aggcacggtg tgttctatcc ttgtcaagag accaactgga 3301 gagatgatac cacttgcagt gaggatgggt acccacgctt ccatgaaaat ccagggtaga 3361 acggttggtg gtcaaatggg catgttgctc acaggagcaa atgccaaaaa catggatttg 3421 ggcacgaacc ctggtgattg tggatgcccg tacattttta agaggggcaa tgacattgtg 3481 gtagctgggg ttcacactgc agctgcacgg ggtggcaaca ctgtcatctg tgccacgcaa 3541 ggagctgacg gagaggccgt ccttgaagga ggggaggaca aagggacgta ctgtggtgcc 3601 ccaatacttg gacttgggaa ggcccccaaa ctcagtacca agacaaagtt ctggcgatcc 3661 tcccctgatg cgcttccccc gggaacgtat gagccagcat acctaggtgg aaaggaccca 3721 agggttgaga agggcccgtc actccagcag gtcatgagag aacaacttaa gcctttcacc 3781 gaacccagag gaaaaccccc aaaacccaac gttcttgatg aggcaaagaa aactgtgatg 3841 aacgttttgg agcagactat aaaccctgcc aaaccctggt catactccca agcatgtgct 3901 tcgcttgaca agacaacttc aagtggtagc ccgcaccacc tgagaaagaa tgatcattgg 3961 aatggtgaat cttttaccgg tcctttggcc gatcaagctt caaaagcaaa cctaatgtat 4021 gaacaggcaa aacacatgag ccccatttac actgcagccc ttaaagatga actggtcaag 4081 actgacaaga tttacaagaa aataaagaag aggctgttgt ggggttctga cctgggtacc 4141 atggtcaggt gtgccagggc ctttggtggg ttgatggata gcatgaaaga gagctgtgtg 4201 atgttaccct gcagagttgg catgaacatg aatgaagatg gaccaatcat tttcgacaaa 4261 catgcaaagt acaaatatca ctatgatgca gattactcca gatgggactc cacacaacaa 4321 aggagcatct tatctgctgc catggaggtt atggtgaagt tctcagctga accggaactg 4381 gcacaagtgg tcgctgaaga cttactcgcc ccaagccaac tcgacgtggg cgattttgtg 4441 gtgtcagtcc aagaaggtct cccctcaggt gttccgtgca cttcccaatg gaactccata 4501 gcacattgga ttatcaccct tagtgcaatg gcagaagttt ctggtctctc cccagatgtg 4561 atccaagctc actcatgctt ctctttctat ggtgatgatg agatagttag cacagacatc 4621 aacttagacc cagcaaagtt aaccttaaaa ctcagggaat atggattggt ccccaccagg 4681 ccagacaaaa ctgaaggccc attagtcata acagaggacc tccatgggtt gaccttccta 4741 cgcagacaca tcacacgaga tcctgctgga tggtttggaa aattagacca ggattcaatc 4801 ttaaggcaac tctattggac tagaggaccc aaccatgaga acccctacga gtgcatggtc 4861 ccacactcac agcgcgcaac ccagttaatg gcgctgttgg gtgaggcatc attgcatggt 4921 ccccagttct acaagaaagt cagcaagatg gttatcaatg aaattaagag tggtggtctg 4981 gaattttacg tgcccagaca ggaggccatg ttcagatgga tgagattctc tgacctcagc 5041 acgtgggagg gcgatcgcaa tctggctccc gacggtgtga atgaggatgg cgtcgagtga 5101 cgcgcccgtt tctggcaccg atggtgcggc aggactcgtc ccagagagtc aacaagaagt 5161 cttgccttta gagcccgtcg cgggagttca gctggctgct cccgtagcag ggcaaagtaa 5221 tataattgac ccctggatta gaatgaattt tgtgcaagcc cctgccggtg agttcactgt 5281 ttcccctcgg aacgcaccgg gtgaggtgct tattgattta gaattaggac cagaattaaa 5341 cccctatctc aatcaccttg caagaatgta caatgggtat gtgggaggaa tggaggtgga 5401 agttgtcctt gccgggaatg cgttcacggc gggtaagatc ttatttgcag ctgtgccccc 5461 cagcttccca acccatggca tttctgcagc acaggcaact atgttaccac atgtgattgt 5521 ggatgtcagg cagctggagc ctgtccggct ccctcttcct gatgtcagga atgtgatgtt 5581 ccatttctgt caagaaaata aggagccgcg catgagaatt gtggcaatat tgtacacccc 5641 tctccgtgcc aacggtgcgg gtgatgatgt tttcactgtc tcatgtcgtg tgctaacaag 5701 gccctcacca gattttgatt ttatcttctt ggtccccccc tctgtagaaa gcaaattgaa 5761 acagtttacc ctcccaaacc tgcagccaaa tgagatgacc aattcaagat tccccactgg 5821 cattacacaa ctctacacca gcccaaatac caatttggtt gtccagttcc aaaatggcag 5881 gtgtctgctt gatggcacgc ttctcggcac cacccctgtc agagctgctg acatctgcag 5941 ctttagagga gtcacctcaa ctgaagttga tgcaactgac agccccagag tagcagggtc 6001 acatagaata atggtgcagc tcaaggagcc agatggagag gagttttcac ccacaggtcc 6061 caaccctgcc cctgttggca ctccagattt tcaagcagcc atatttggca cccttagtca 6121 aagaaacact ggcggggctg ggcagaattc caacagagcc cacttcgcat acttctatac 6181 taggaacccc acatttgcac caggcatagg gacagttgtg ttttcttttg acactactga 6241 ttttcagaat cgccaaccta ctaaattctc tccttctggt gtgtttgatg atgattcttc 6301 tgaacctttt aatcaatttt ctctgccata ttataatgga tcactcggtg cagtggatgc 6361 tgggaaacta gctccgcctg ttgcacccaa ctacccgggt gagcaaattc tttattttag 6421 agggaatatt cctttcaaag gtgggtatgg agagggtgaa attgatagct tgctccccca 6481 ggaatggatc acccactttt atgcagagca ggctcccaca caaggtgacg cagccctgct 6541 gcgttactac aatcctgaca ctggcagagt cctctttgag tgcaaactcc accgcgaggg 6601 attcatcaca atcaattaca cagggtccaa tgctcttgct gtaccagtca atggagtctt 6661 caggtttgag ggctgggtta ataaattcta cacactgacc cccatgggaa atggcaacgg 6721 ccgcaggggt agaagaaggg agttataatg gctggagctt tctttgcagg tcttgcttct 6781 gatgttctcg gcagcggttt gtcttcactt atcggtgccg gtgccaatgc cataaatcaa 6841 aaagttgagt atgattacaa taggcacttg cagtcagctt ctttccaaca tgataaggat 6901 atgctcaact cacaggtgga agccacaaag cacttacaaa gggagatgat ggccatcaag 6961 gaaggcatgc tgctcaaggg tgggttctcc cccactgatg cagcaagagg ggctgtcaac 7021 gcccctatga cacaaatctt ggattggaat ggcaccagat actgggcccc gggtgcaatg 7081 aaaaccacgg cttactcagg ccgttttgtt agtcaatcta ctcataggcc tatccccaat 7141 gttgtgcaca agagtgatgg actcacacac caaactgggt caaccacagg gtccatttct 7201 tctctctcca catcatccac ccgtgttcca tcatccacat cctcatctag tagtgcttct 7261 aggacaaggg actgggtgtc tgaacaacaa agactcagcc ctttcatgag aggctctctc 7321 cacacagcat atgtgactcc tccctcaagc tctgcctctt cagtaagctc tgtttctaca 7381 gtcccatatc atgttttaga ttcatggacc ccttctttca atactaaaca tttacctttg 7441 tttgctcatg ttaggaaaag gggacagtct caagtttaat ctaccactca tggtttgatt 7501 gatttgtttt gtaattagtg aaatgttgat tctttctaat tcggc // LOCUS MN227776 7535 bp RNA linear VRL 03-AUG-2019 DEFINITION Norovirus GIX strain Providence0110 isolate Hu/US/2017/GII.P15-GIX.1/Providence0110, complete genome. ACCESSION MN227776 VERSION MN227776.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7535) AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and Chhabra,P. TITLE Direct Submission JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7535 /organism="Norovirus GIX" /mol_type="genomic RNA" /strain="Providence0110" /isolate="Hu/US/2017/GII.P15-GIX.1/Providence0110" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA" /collection_date="19-Jan-2018" /note="genotype: GIX.1-GII.P15" gene 4..5100 /gene="ORF1" CDS 4..5100 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QDR48017.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVRFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDIAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLVYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHSKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 4..1005 /gene="ORF1" /product="p48" mat_peptide 1006..2103 /gene="ORF1" /product="NTPase" mat_peptide 2104..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3024 /gene="ORF1" /product="VPg" mat_peptide 3025..3567 /gene="ORF1" /product="Pro" mat_peptide 3568..5097 /gene="ORF1" /product="RdRp" gene 5081..6748 /gene="ORF2" CDS 5081..6748 /gene="ORF2" /codon_start=1 /product="VP1" /protein_id="QDR48018.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSSRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6748..7479 /gene="ORF3" CDS 6748..7479 /gene="ORF3" /codon_start=1 /product="VP2" /protein_id="QDR48019.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHHVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 tgaatgaaga tggcgtcgaa tgacgtcgtt actgcccttg gcagccagaa agctaccaat 61 gacagctata gcacaccccc ccccaacaag gaggaggcta gtgtgcttgc caacgtcaaa 121 gttggcttta aaaagatcct cggggccgtc cctaaggctc cgaaacagca tggcagcata 181 caaaaaccgc cgatcgttga gatcgatggt gtggccatgc gtgtaccctc tcccccccca 241 aacggcgagg acgcagtccg cttcgtgaag gaaacggaga ccatcaaggg actaccagat 301 ttgtccaccg tggagaacga atctgaacac tccccgtaca cagtcccccc gttgagtgag 361 agggagcaca ggccagcaac agagccattg cccggcacta tacttgagat gtgggatggt 421 gagttctatc actactccat atacgtggac aatggcaagg cccttggtgt tcacaaacca 481 ccagcagcaa ttagcctagc aacgatagat ttgacaccta tatcgttgta ctggagaccg 541 gtttacacac cgccgtacct tgtccaccca gagacgctca agggactggc tggcgaaaag 601 tttccctaca cggccttcag caacaactgc tacaacttct gttgctgggt tctggacctc 661 aatgattcat ggttgaaccg gagatccata actagaacaa ctggattctt caaaccctac 721 caatcctgga ataggaaacc ccttccaact gtggatgatg gcaagatcaa gaaggtcgcg 781 aatgcagttc tgtgcgccct aggatcactt ttctccaagc ccattaaaga cctccttggt 841 aaattgaaac ccctcaatct cctgaacttg cttgcatcat gtgactggac ctttgctggt 901 gtggtggaga cagttattct tgcagcagag ctcttcaatg tcttttggac tccacctgat 961 gtctccaact tcattgcttc cataattggc gacttcgaga tgcaaggacc agaggatatt 1021 gctgtggagc tcgttcctgt tatcatggga ggcattggta tggtgttggg gttcacagct 1081 gagaagatag ggcgtatgtt atcatctgca gcatccactc tcagggcttg taaggacctt 1141 ggcaattacg ccttagacat cctgaaatta gtcatgaagt ggtttttccc taaaaaggag 1201 gaaaaggccg agatggaaac cctgagggcc attgaggatg ctgtccttga catggaggca 1261 attggaaaca accacctcac aacactgctc aaagacaaag atagcttgag cgcctacatg 1321 aagaccttag acatggagga ggagaaggct aggaggctct ccactaaatc atcatcaccc 1381 gacattgttg gcaccatcaa cgcgatcctc gcacgcattg ccgccgcaag gtcactccta 1441 cacaaagcca aagaggaaat gttcagtcga gcgaggcctg ttgtcgttat ggtgtctgga 1501 agacccggca tcgggaagac atatctggct agacagcttg ccaaatcgat tgcaaacagc 1561 atgagtggtg atcagagagt gggactcgtc ccccgcaatg gggttgacca ctgggatgct 1621 tataggggtg aaagagttgt cctatgggat gactatggca tgggaaatac aatcaaagat 1681 gccctgaccc tacaagagtt ggctgacacc tgcccagtta ccctcaattg tgacaggatc 1741 gaaaacaagg ggaagatgtt tgacagtgat gtcatcataa taacaaccaa tcttgtcaac 1801 cccgctcccc tcgattatgt taattttgag gcttgctgta ggcgaattga cttccttgtt 1861 tatgccgagg caccggacat tgagaaagtc aaaaaggatt tccctggaca acctgacatg 1921 tggcgtgatc attttaaagc tgactcgtca cacataaagt tgtcactagc cccacagggt 1981 ggctttgaca agaacggaaa cacccctcac gggaagggca ccatgaaaac tctcacgcta 2041 cactcactca ctgcacgtgt gatgggttta gtgtgtgaga ggaaggatga gttccaacta 2101 cagggtgatg aactacaggt ttataacttt gacacaaaca aggtctctgc atttagaaaa 2161 ctagcagctg acaacaagta tagctttgtg gagacaatga aagtcggtgc agtcctcaag 2221 aacgtaaaaa ctctggaaga tctgaagtct gccctcaagg gagtcaaatt caaagagtgt 2281 gaaataattt acaagggggc caagtataga gtcgcctcgg atggctgtgg cagtgtctca 2341 gtttccaaga tcaaggatgt tgtgtcgcag acagccaatg aagtgcacac agctctcctg 2401 agattgaggc aagcccgggc caggtattac atcagctgct tccaagacct catatacacc 2461 ctaatacagg ttgctggagc ctcatttgtg gtgcatagga tctcaaagag attctcatgg 2521 gaccgctgga tcaagcccag tgatagccct caggaggaag aacaacccag cagtgaggtg 2581 gccacaggga gatgggaaat tgagccaaaa gacacagacc ctgaaggcaa aaagggtaaa 2641 aataagaaag gaaggggaag gaaacacaca gctttctcta gtaagggtct tagtgatgaa 2701 gagtatgatg agttcaaaag aatcagagag gaaaagaacg gcaaatactc catagaagaa 2761 tacctccagg accgtgacag attttatgag gaagtggcag ttgcaagggc aacggaagag 2821 gacttctgtg aggaagaagt ggcaaagatc agacagagaa tcttcaggcc cacaaagaag 2881 cagaggaagg aggagcgagg cgtcctaggg ctggttactg gttcagaaat caggaagaga 2941 agaccagatg actttcagcc taaaggcaac ttgtgggctg atgacaccag gagcgtggac 3001 tacaacgaaa agctggagtt tgaggcccct ccaagcgtgt ggtcacgtat cgtacccctc 3061 ggcactggct ggggtttctg ggtctcctcc aacctcctca taacaacgac acacgttctg 3121 ccaaaaggat tgaaggagct gttcggggtt gacatcaaac aagtccagat acacaagtca 3181 ggtgagttct gcaggttcag gtttccaaga ccaatcagac cagatgtcac aggcctcatc 3241 cttgaagaag gggcccctga aggcacggtg tgttccatcc ttgtcaaaag accgactgga 3301 gagatgatac cacttgcagt gaggatgggc acccatgctt ccatgaaaat ccagggtaga 3361 acggttggtg gtcaaatggg catgttgctc acaggagcaa atgccaaaaa catggatttg 3421 ggcacgaacc ctggtgattg tggatgcccg tacattttta agaggggcaa tgacattgtg 3481 gtggctgggg ttcacactgc agctgcgcgg ggtggcaaca ctgtgatctg tgccacgcaa 3541 ggagctgatg gagaggccgt ccttgaagga ggagaggaca aagggacgta ctgtggtgcc 3601 ccaatacttg gacttgggaa ggcccccaaa ctcagtacca agacaaagtt ctggcgatcc 3661 tcccctgatg cgcttccccc gggaacgtat gagccagcat acctaggtgg aaaggaccca 3721 agggttgaga agggcccgtc gcttcagcag gtcatgagag aacaacttaa acccttcacc 3781 gaacccagag gaaaaccccc aaaacccaac gttcttgatg aggcaaagaa aactgtgatg 3841 aacgtgttgg agcagactat aaaccctgcc aaaccctggt catactccca agcatgtgct 3901 tcgcttgaca agacaacttc aagtggtagc ccgcaccacc tgagaaagaa tgatcattgg 3961 aatggtgaat ctttcaccgg tcctttggcc gatcaagctt caaaagcaaa cctagtgtat 4021 gaacaggcaa aacacatgag ccccgtttac actgcagccc tcaaagatga gctggtcaaa 4081 actgataaga tttacaagaa aataaagaag aggctgctgt ggggttctga tctgggtacc 4141 atggtcaggt gtgccagggc ttttggtggg ttgatggata gcatgaaaga gagttgtgtg 4201 atgttaccct gcagagttgg catgaacatg aatgaagatg gaccaatcat ttttgacaaa 4261 cattcaaaat acaaatatca ctatgatgca gattactcca gatgggattc cacacaacaa 4321 aggagcatct tatctgctgc catggaggtt atggtgaagt tctcagctga accagagctg 4381 gcacaagtgg tcgctgaaga cttgctcgcc ccaagccaac tcgacgtggg cgattttgtg 4441 gtgtcagtcc aagaaggtct cccctcaggt gttccgtgca cttcccaatg gaactccata 4501 gcacattgga tcattacact tagtgcaatg gcagaagttt ctggtctctc cccagatgtg 4561 atccaggctc attcatgctt ctctttctat ggtgatgatg agatagttag cacagacatc 4621 aacttagacc cagcaaagct aaccttaaaa ctcagggaat atgggttggt ccccaccaga 4681 ccagacaaga ctgaaggccc attagtcatc acagaggacc tccatgggtt gaccttccta 4741 cgcagacaca tcacacgaga tcctgctgga tggtttggaa aattagatca ggattcaatc 4801 ttaaggcaac tctattggac tagagggccc aaccatgaga acccctacga atgcatggtc 4861 ccacactcac agcgcgcaac ccagttaatg gcgctgttgg gtgaggcatc attgcacggc 4921 ccccagttct acaagaaagt cagcaagatg gttatcaatg aaattaagag tggtggtctg 4981 gaattttacg tgcccagaca ggaggccatg ttcagatgga tgagattctc tgacctcagc 5041 acgtgggagg gcgatcgcaa tctggctccc gacggtgtga atgaggatgg cgtcgagtga 5101 cgcgcccgtt tctggcaccg atggtgcggc aggactcgtc ccagagagtc aacaagaagt 5161 cttgccttta gagcccgtcg cgggagttca gctggctgct cccgtagcag ggcaaagtaa 5221 tataattgac ccctggatta gaatgaattt tgtacaagcc ccggccggtg agttcactgt 5281 ttccccccgg aacgcaccgg gtgaggtgct tattgatttg gaattaggac cagagttaaa 5341 tccctatctc aatcaccttg caagaatgta caatgggtat gtgggaggaa tggaggtgga 5401 agttgtcctt gccgggaatg cgttcacggc gggtaagatc ttattcgcag ctgtgccccc 5461 cagcttccca acccatggca tttctgcagc acaggctact atgttgccac atgtgattgt 5521 ggatgtcagg cagctggagc ctgttcggct ccctcttcct gatgtcagga atgtgatgtt 5581 ccatttctgt caagaaaata aggagccgcg catgagaatt gtggcaatat tgtacacccc 5641 tctccgtgcc aacggtgcgg gtgatgatgt tttcactgtc tcatgtcgtg tgctaacaag 5701 gccctcacca gattttgatt ttattttctt ggtccccccc tctgtagaga gtaagctgaa 5761 acagtttacc cttccaaacc tgcagccaaa tgaaatgacc aattcaagat ttcccactgg 5821 tatcacacaa ctttacacca gtccaaacac caatttggtt gtccagttcc aaaatggcag 5881 gtgtctgctt gatggcacac ttctcggcac cacccctgtt agagctgctg acatctgcag 5941 tttcagagga gtcacctcaa ctgaagttga tgcaactgac agttccagag tggcagggtc 6001 gcatagaatt atggtgcagc tcaaggagcc agatggagag gagttttcac ctacaggtcc 6061 caaccctgcc cctgttggca ctccagactt tcaagcagcc atatttggca cccttagtca 6121 aagaaacact ggcggggctg ggcagaattc caacagagcc cacttcgcat acttttacac 6181 tagaaaccct acatttgcac caggcatagg gacagttgtg ttttcttttg atactactga 6241 ttttcagaat cgccaaccta ctaaattctc tccttctggt gtgtttgatg atgattcttc 6301 tgaacctttt aatcaatttt ctctaccata ttataatgga tcactcggtg cagtggatgc 6361 tgggaagcta gctccgcctg tagcacccaa ctacccaggt gagcagattc tttattttag 6421 agggaatatc cccttcaaag gtgggtatgg agagggtgaa attgatagct tgctccccca 6481 ggaatggatc acccactttt atgcagagca ggctcctaca caaggtgacg cagccctgct 6541 gcgttactac aaccctgaca ctggcagagt cctctttgag tgcaaactcc accgcgaggg 6601 attcatcaca atcaattaca cagggtccaa tgctcttgct gtaccagtca atggagtctt 6661 caggtttgag ggctgggtta acaaattcta cacactgacc cccatgggaa atggcaatgg 6721 ccgcaggggt agaagaaggg agttataatg gctggagctt tctttgcagg tcttgcttct 6781 gatgttctcg gcagcggttt gtcttcactt atcggtgccg gtgccaatgc cataaatcaa 6841 aaggttgaat atgattacaa taggcacttg cagtcagctt ctttccaaca tgataaggat 6901 atgctcaact cacaggtgga agccacaaag cacttacaaa gggagatgat ggccatcaag 6961 gaaggcatgc tgctcaaggg tgggttctcc cccactgatg cagcaagagg agctgtcaac 7021 gcccctatga cacaaatctt ggattggaat ggcaccagat actgggcccc gggtgcgatg 7081 aaaaccacgg cttactcagg ccgttttgtt agccaatcca ctcataggcc tattcccaat 7141 gttgtgcaca agagtgatgg acccatacac caaaccgggt caaccacagg gtccatttct 7201 tctctctcca catcatccac ccgtgttcca tcatccacat cctcatctag tagtgcttct 7261 agaacaaggg actgggtgtc tgaacagcaa agactcagcc ctttcatgag aggctctctt 7321 cacactgcat atgtgactcc tccctcaagc tctgcctctt cagtaagctc tgtttctaca 7381 gtcccacacc atgttttgga ttcatggacc ccttctttta acaccaaaca tttacctttg 7441 tttgctcatg ttaggaaaag gggacaatct caagtttaat ctaccactca tggtttgatt 7501 gatttgtttt gtaattagtg aaatgttgat tcttt // LOCUS MN227777 7546 bp RNA linear VRL 03-AUG-2019 DEFINITION Norovirus GIX strain Shenandoah0111 isolate Hu/US/2017/GII.P15-GIX.1/Shenandoah0111, complete genome. ACCESSION MN227777 VERSION MN227777.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7546) AUTHORS Montmayeur,A., Bauer,J., Tatusov,R.L., Barclay,L., Vinje,J. and Chhabra,P. TITLE Direct Submission JOURNAL Submitted (10-JUL-2019) Division of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPAdes v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7546 /organism="Norovirus GIX" /mol_type="genomic RNA" /strain="Shenandoah0111" /isolate="Hu/US/2017/GII.P15-GIX.1/Shenandoah0111" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA" /collection_date="09-May-2018" /note="genotype: GIX.1-GII.P15" gene 4..5100 /gene="ORF1" CDS 4..5100 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QDR48020.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 4..1005 /gene="ORF1" /product="p48" mat_peptide 1006..2103 /gene="ORF1" /product="NTPase" mat_peptide 2104..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3024 /gene="ORF1" /product="VPg" mat_peptide 3025..3567 /gene="ORF1" /product="Pro" mat_peptide 3568..5097 /gene="ORF1" /product="RdRp" gene 5081..6748 /gene="ORF2" CDS 5081..6748 /gene="ORF2" /codon_start=1 /product="VP1" /protein_id="QDR48021.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6748..7479 /gene="ORF3" CDS 6748..7479 /gene="ORF3" /codon_start=1 /product="VP2" /protein_id="QDR48022.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSGASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 tgaatgaaga tggcgtcgaa tgacgtcgtt actgcccttg gcagccaaaa agctaccaat 61 gacagctata gcacacctcc ccccaacaag gaggaggcta gtgtgcttgc caacgttaaa 121 gttggcttta aaaagatcct cggggccgtc cctaaggctc cgaaacagca tggcagcata 181 caaaaaccgc cgatcgtcga gatcgatggt gtggccatgc gtgtaccctc tcccccccca 241 aacggtgagg acgcagtcca cttcgtgaag gaaacggaga ccatcaaggg actgccagat 301 ttgtccaccg tggagaacga gtctgaacac tccccgtaca cagtcccccc gttgagtgag 361 agggagcaca ggccagcaac agagccattg cccggcacta tacttgagat gtgggatggt 421 gagttctacc actactccat atacgtggac aatggcaagg cccttggagt tcacaaacca 481 ccagcagcaa ttagcctagc aacgatagat ttaacaccta tatcgttgta ctggagaccg 541 gtttacacac cgccgtacct tgtccaccca gagacgctca agggactggc tggcgaaaag 601 ttcccctaca cggccttcag caacaactgc tacaacttct gttgctgggt tctggacctc 661 aatgattcgt ggctgaaccg gagatccata actagaacaa ctggtttctt caaaccctac 721 caatcctgga acaggaagcc cctcccaact gtggatgatg gcaagatcaa gaaggtcgcg 781 aatgcagttc tgtgtgccct aggatcactt ttctccaagc ccattaagga cctccttggc 841 aaattaaaac ccctcaatct cctgaacttg cttgcatcat gtgactggac ctttgctggc 901 gtggtggaaa cagtcattct tgctgcagag ctcttcaatg tcttttggac tccacctgat 961 gtctccaact tcattgcttc cataattggc gacttcgaga tgcaaggacc agaggatctt 1021 gctgtggagc ttgtccctgt tatcatggga ggcattggta tggtgttagg gtttacagct 1081 gagaagatag ggcgtatgtt atcatctgca gcatccaccc tcagggcttg taaggacctt 1141 ggcaattacg ccttagacat cctgaaacta gtcatgaagt ggtttttccc taaaaaggag 1201 gaaaaggccg agatggaaac cctgagggcc attgaggacg ctgtccttga catggaggca 1261 attggaaaca accacctcac aacgctgctc aaagacaaag atagcttgag cgcctacatg 1321 aagaccttgg acatggagga ggagaaggcc aggaggctct ccactaaatc atcatcaccc 1381 gacattgttg gtaccatcaa cgcgatcctc gcacgcattg ctgccgcaag gtcactccta 1441 cacaaagcca aagaggaaat gttcagtcga gcgaggcctg ttgtcgttat ggtgtctgga 1501 agacccggca tcgggaagac atatctggct agacagcttg ccaaatcgat tgcgaacagc 1561 atgagtggtg atcagagagt gggactcgtc ccccgcaatg gggttgacca ctgggatgcc 1621 tataggggtg aaagagttgt cctatgggat gactacggca tgggaaatac aatcaaagat 1681 gccctgaccc tacaagagtt ggctgacacc tgcccagtta ccctcaactg tgacaggatc 1741 gaaaacaagg ggaagatgtt tgacagtgat gtcatcataa taacaaccaa tcttgtcaac 1801 cccgctcccc tcgattatgt taattttgag gcttgctgta ggcgaattga cttccttgtt 1861 tatgccgagg caccggacat tgagaaagtc aaaaaggatt tccctggaca acctgacatg 1921 tggcgtgacc attttaaagc tgactcgtca cacataaagt tatcactagc cccacagggt 1981 ggctttgaca agaacggaaa cacccctcac gggaagggca ccatgaaaac tctcacgcta 2041 cactcactca ctgcacgtgt gatgggttta gtgtgtgaga ggaaggatga gttccaactg 2101 cagggtgatg aactacaggt ttataacttt gacacaaaca aggtctctgc atttagaaaa 2161 ctagcagctg acaacaagta cagctttgtg gagacaatga aagtcggtgc agtcctcaag 2221 aatgtaaaaa ccctggaaga tctgaaatct gccctcaagg gagttaaatt caaagagtgt 2281 gaaataatct acaagggggc caagtataga gtcgcctcgg atggttgtgg cagtgtctca 2341 gtttccaaga tcaaggatgt tgtgtcgcag acatccaacg aagtgcacac agcgctcctg 2401 agattgaggc aagcccgggc caggtattac atcagctgct tccaagacct catatacacc 2461 ctaatacagg ttgctggagc ctcatttgtg gtacatagga tctcaaagag attctcatgg 2521 gaccgctgga tcaaacccag tgacagccct caggaggaag aacaacccag cagtgaggtg 2581 gccacaggga gatgggaaat tgagccaaaa gacacagacc ctgaaggcaa aaagggtaaa 2641 aacaagaagg gaaggggaag gaaacacacg gctttctcta gtaagggtct tagtgatgaa 2701 gagtatgatg agttcaaaag aatcagagag gagaagaacg gcaaatactc catagaagaa 2761 tacctccagg accgtgatag attttatgag gaagtggcag ttgcaagggc aacggaagag 2821 gacttctgtg aggaagaagt ggcaaagatc agacagagaa tcttcaggcc cacaaagaag 2881 cagaggaagg aggagcgtgg cgtcctaggg ctggtcactg gttcagaaat caggaagaga 2941 agaccagatg acttccagcc taaaggtaac ttgtgggctg atgacaccag gagcgtggac 3001 tacaacgaaa agctggagtt tgaggcccct ccgagcgtgt ggtcacgtat cgtacccctc 3061 ggcactggct ggggtttctg ggtctcctcc aaccttctca taacaacaac acatgtcctg 3121 ccaaaaggat tgaaggagct gttcggggtt gatatcaaac aagtccagat acacaagtca 3181 ggtgagttct gcaggttcag gtttccaaga ccaatcagac cagatgtcac aggcctcatc 3241 cttgaagaag gggcccctga aggtacggtg tgttctatcc ttgtcaaaag accgactgga 3301 gagatgatac cacttgcagt gaggatgggc acccacgctt ccatgaaaat ccagggtaga 3361 acggttggtg gtcaaatggg catgttgctc acaggagcaa acgccaaaaa catggatttg 3421 ggcacgaacc ctggtgattg tggatgcccg tacattttta agaggggcaa tgacattgtg 3481 gtagctgggg tccacactgc agctgcacgg ggtggcaaca ctgtgatctg tgccacgcaa 3541 ggagctgacg gagaggccgt ccttgaagga ggagaggaca aagggacgta ctgtggtgcc 3601 ccaatacttg gactcgggaa ggctcccaaa ctcagtacca agacaaagtt ctggcgatcc 3661 tcccctgatg cgcttccccc gggaacgtat gagccagcat acctaggtgg aaaggaccca 3721 agggttgaga agggcccgtc actccagcag gtcatgagag aacaacttaa acctttcacc 3781 gaacccagag gaaaaccccc aaaacccaac gttcttgatg aggcaaagaa aactgtgatg 3841 aacgtgttgg agcagactat aaaccctgcc aaaccctggt catactccca agcatgtgct 3901 tcgcttgaca agacaacttc aagtggtagc ccgcaccacc tgagaaagaa tgatcattgg 3961 aatggtgaat cttttaccgg tcctttggcc gatcaagctt caaaagcaaa cctaatgtat 4021 gaacaggcaa aacacatgag ccccgtttac actgcggccc ttaaagatga actggtcaag 4081 actgataaga tctacaagaa aataaagaag aggctgctgt ggggctctga cctgggtacc 4141 atggtcaggt gtgctagggc ttttggtggg ttgatggata gcatgaaaga gagttgtgtg 4201 atgttgccct gcagagttgg catgaacatg aatgaagatg gaccaatcat ttttgacaaa 4261 catgcaaagt acaaatatca ctatgatgca gattactcca gatgggattc cacacaacaa 4321 aggagcatct tatctgctgc catggaggtt atggtgaagt tctcagctga accggaactg 4381 gcacaagtgg tcgctgaaga cttgctcgcc ccaagccaac tcgacgtggg cgactttgtg 4441 gtgtcagtcc aagaaggtct cccctcaggt gttccgtgca cttcccaatg gaactccata 4501 gcacattgga tcatcaccct tagtgcaatg gcagaagttt ctggtctctc cccagatgtg 4561 atccaagctc actcatgctt ctctttctat ggtgatgatg agatagttag cacagacatc 4621 aacttggacc cagcaaagct aaccttaaaa ctcagggaat atggattggt ccccaccaga 4681 ccagacaaaa ctgaaggccc attagtcatc acagaggatc tccatggatt gacctttcta 4741 cgcagacaca tcacacgaga tcctgctgga tggtttggaa aattagacca ggattcaatc 4801 ttgaggcaac tctattggac tagaggaccc aaccatgaaa acccctacga gtgcatggtc 4861 ccacactcgc agcgcgcaac tcagttaatg gcgctgttgg gtgaggcatc attgcacggt 4921 ccccagttct acaagaaagt cagcaagatg gttatcaatg agattaagag tggtggtctg 4981 gaattttacg tgcccagaca ggaggccatg ttcagatgga tgagattctc tgacctcagc 5041 acgtgggagg gcgatcgcaa tctggctccc gacggtgtga atgaggatgg cgtcgagtga 5101 cgcgcccgtt tctggcaccg atggtgcggc aggactcgtc ccagagagtc aacaagaagt 5161 cttgccttta gagcccgtcg cgggagttca gctggctgct cccgtagcag ggcaaagtaa 5221 tataattgac ccctggatta gaatgaattt tgtgcaagcc ccggccggtg agttcactgt 5281 ttcccctcgg aacgcaccgg gtgaggtgct tattgattta gaattaggac cagaattaaa 5341 tccctatctc aatcaccttg cgagaatgta caatgggtat gtgggaggaa tggaggtgga 5401 agttgtcctt gccgggaatg cgttcacggc gggtaagatc ttattcgcag ctgtgccccc 5461 cagcttccca acccacggca tttctgcagc acaggcaact atgttaccac atgtgattgt 5521 ggatgtcagg cagctggagc ctgtccggct ccctcttcct gatgtcagga atgtgatgtt 5581 ccatttctgt caagaaaata aggagccgcg catgagaatt gtggcaatat tgtacacccc 5641 tctccgtgcc aatggtgcgg gtgatgatgt cttcactgtc tcatgtcgtg tgctaacaag 5701 gccctcacca gattttgact ttattttctt ggtccccccc tctgtagaga gtaagttgaa 5761 acagtttacc cttccaaacc tgcagccaaa tgaaatgacc aattcaagat tccccactgg 5821 tatcacacaa ctctacacca gtccaaatac caatttggtt gtccagttcc aaaatggcag 5881 gtgtctgctt gatggtacac tcctcggcac cacccctgtc agagctgctg acatctgcag 5941 tttcagagga gtcacctcaa ctgaagttga tgcaactgac agccccagag tggcagggtc 6001 ccatagaatt atggtgcagc tcaaggagcc agatggagag gagttttcac ccacaggtcc 6061 taaccctgcc cctgttggca ctccagactt tcaagcagcc atatttggca cccttagtca 6121 aagaaacact ggcggggctg ggcagaactc caacagagcc cacttcgcat acttctatac 6181 tagaaacccc acatttgcac caggtatagg gacagttgtg ttttcttttg atactactga 6241 ttttcaaaat cgtcaaccta ctaaattctc tccttctggt gtgtttgatg atgattcttc 6301 tgaacctttt aatcaatttt ctctaccata ctataatgga tcactcggtg cagtggatgc 6361 tggaaaacta gctccgcctg tagcgcccaa ctacccaggt gagcagattc tttattttag 6421 agggaatatt cccttcaaag gtgggtatgg agagggtgaa attgatagct tgcttcccca 6481 ggagtggatc acccactttt atgcagagca ggctcctaca caaggtgacg cagccctgct 6541 gcgttactac aaccctgaca ctggcagagt cctctttgag tgcaaactcc accgcgaggg 6601 attcatcaca atcaattaca cagggtccaa tgctcttgct gtaccagtca atggagtctt 6661 caggtttgag ggctgggtta acaaattcta cacactgacc cccatgggaa atggcaacgg 6721 ccgcaggggt agaagaaggg agttataatg gctggagctt tctttgcagg tcttgcttct 6781 gatgttctcg gcagcggctt gtcttcactt atcggtgccg gtgccaatgc cataaatcaa 6841 aaggttgaat atgattacaa taggcacttg cagtctgctt ctttccagca tgataaggat 6901 atgctcaact cacaggtgga agccacaaag cacttacaaa gagagatgat ggccatcaag 6961 gaaggcatgc tgctcaaggg tgggttctcc cccactgatg cagcaagagg agctgtcaac 7021 gcccctatga cacaaatttt ggattggaat ggcaccagat actgggcccc gggtgcaatg 7081 aaaaccacgg cttactcagg ccgttttgtt agccaatcca ctcacaggcc tattcccaat 7141 gttgttcaca agagtgatgg acccatacac caaactgggt caaccacagg gtccatttct 7201 tctctctcca catcatccac ccatgttcca tcatccacat cctcatctag tggtgcttct 7261 agaacaaggg actgggtgtc tgaacagcaa agactcagcc ctttcatgag aggctctctt 7321 cacactgcat atgtgactcc tccctcaagc tctgcctcct cagtaagctc tgtttctaca 7381 gtcccacact atgttttaga ttcatggact ccttctttta acaccaaaca tctaccattg 7441 tttgctcatg ttagaaaaag gggacaatct caagtttaac ctaccactca tggtttgatt 7501 gatttgtttt gtaattagtg aaatgttgat tcttcctaat tcggca // LOCUS NC_044045 7551 bp RNA linear VRL 31-JUL-2019 DEFINITION Norovirus GII/Hu/JP/2007/GII.P15_GII.15/Sapporo/HK299, complete genome. ACCESSION NC_044045 VERSION NC_044045.1 DBLINK BioProject: PRJNA485481 KEYWORDS RefSeq. SOURCE Norovirus GII/Hu/JP/2007/GII.P15_GII.15/Sapporo/HK299 ORGANISM Norovirus GII/Hu/JP/2007/GII.P15_GII.15/Sapporo/HK299 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7551) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (29-JUL-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 7551) AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K., Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and Katayama,K. TITLE Direct Submission JOURNAL Submitted (17-JAN-2014) Department of Virology II, National Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama, Tokyo 208-0011, Japan COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to KJ196290. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7551 /organism="Norovirus GII/Hu/JP/2007/GII.P15_GII.15/Sapporo/HK299" /mol_type="genomic RNA" /isolate="Sapporo/HK299" /host="Homo sapiens" /db_xref="taxon:1529918" /country="Japan" /collection_date="2007" /genotype="GIX" /note="The genotype was updated from GII.P15_GII.15 to GVIII to conform to CaliciNet genotypes" 5'UTR 1..4 gene 5..5101 /gene="ORF1" /locus_tag="FQV34_gp1" /db_xref="GeneID:40888220" CDS 5..5101 /gene="ORF1" /locus_tag="FQV34_gp1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="YP_009679034.1" /db_xref="GeneID:40888220" /translation="MRMASSDVATAFGSQKATNDSYNTPPPNKEEASVLTNVKVGFKK ILGAVPKASRQHGNTQKPSTVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFNNNCYNFCCWVLD LNDSWLNRRSINRTTGFFKPYQAWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPENLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKAR KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIASSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VRTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPS SEEATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLISLERVLPKGVSELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLCTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPSVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHVSPVYTAALKDELVKTDKIYNKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRCILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMSEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /locus_tag="FQV34_gp1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /locus_tag="FQV34_gp1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /locus_tag="FQV34_gp1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /locus_tag="FQV34_gp1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /locus_tag="FQV34_gp1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /locus_tag="FQV34_gp1" /product="RdRp" gene 5082..6749 /gene="ORF2" /locus_tag="FQV34_gp2" /db_xref="GeneID:40888219" CDS 5082..6749 /gene="ORF2" /locus_tag="FQV34_gp2" /codon_start=1 /product="VP1" /protein_id="YP_009679035.1" /db_xref="GeneID:40888219" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLREPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGSV PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="ORF3" /locus_tag="FQV34_gp3" /db_xref="GeneID:40888218" CDS 6749..7480 /gene="ORF3" /locus_tag="FQV34_gp3" /codon_start=1 /product="VP2" /protein_id="YP_009679036.1" /db_xref="GeneID:40888218" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSISSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" 3'UTR 7481..7551 ORIGIN 1 gtgaatgagg atggcgtcga gtgacgtcgc tactgccttt ggcagccaga aagctaccaa 61 tgacagctat aacacacccc ctcccaacaa ggaggaggct agtgtgctca ccaacgttaa 121 agttggtttt aagaagatcc tcggggccgt tcccaaggct tcgagacagc atggcaacac 181 acaaaaaccg tcgaccgttg agatcgatgg tgtggccatg cgtgtgccct ctcccccccc 241 aaacggcgag gacgcggttc actttgtgaa ggaaacggag accatcaagg gattgccaga 301 tttgtccacc gtggaaaacg aatctgaaca ctccccatac acagtcccac cactgagtga 361 gagggaacac aggccagcaa cagaacccct gcctggcact atacttgaaa tgtgggatgg 421 tgagttctac cactactcca tatatgtgga caatggcaag gcccttggtg tgcacaaacc 481 accagcagca atcagccttg caacgataga tttaacacct atatcgttgt attggagacc 541 ggtgtataca ccgccgtacc ttgtccaccc agagacactc aaagggctgg ctggtgaaaa 601 gtttccctat acagctttca acaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattca tggttgaatc ggaggtccat aaacaggaca actggatttt tcaaacccta 721 ccaagcctgg aacaggaagc ccctcccaac tgtggatgat ggtaagatca agaaggttgc 781 gaatgcagtt ctgtgcgccc taggatcact tttctcaaaa cccatcaagg acctccttgg 841 gaagctaaaa ccccttaacc tcctaaatct gctcgcatca tgtgactgga cctttgctgg 901 tgtagtagaa acagttattc ttgcagcaga gctcttcaat gtcttttgga ccccccctga 961 tgtctctaac ttcattgcct ccataattgg tgactttgag atgcaaggac cagaaaacct 1021 cgctgtggag cttgtccccg ttatcatggg aggcattggc atggtgttag gattcacagc 1081 tgagaagata gggcgcatgt tgtcatctgc agcatccact cttagagctt gtaaggatct 1141 tggtaattac gccctggaca ttctaaagct ggtcatgaaa tggttcttcc ccaagaagga 1201 ggagaaggcc gagatggaaa ctctaagagc cattgaggat gccgtccttg acatggaggc 1261 aattggcaac aaccatctca caacattgct caaagacaag gacagcctaa acgcctacat 1321 gaagacctta gacatggagg aggaaaaggc caggaaactc tcaaccaaat catcatcacc 1381 cgacattgtt ggcaccatca acgcaatcct tgcccgcatc gccgcagcaa gatcactcct 1441 gcataaagcc aaagaggaga tgttcagtcg ggcgaggcct gttgtcgtaa tggtctccgg 1501 gagaccaggg atcgggaaga cttacctggc tagacaactt gctaagtcaa tagcaagcag 1561 catgagtggt gatcagaggg taggacttgt cccccgcaat ggtgttgacc attgggacgc 1621 ctataggggt gagagagtcg tcctgtggga tgactatggt atgggaaaca caattaaaga 1681 cgccctgact ctacaggagt tggcagacac ctgcccagtc accctcaatt gtgacaggat 1741 cgagaacaag gggaagatgt ttgacagtga tgtcatcata attacaacca atcttgtcaa 1801 ccccgccccc ctcgattacg tcaactttga ggcttgctgt agacgaattg acttccttgt 1861 ctatgccgag gcaccagaca ttgagaaagt caaaaaggat ttccctgggc aaccagacat 1921 gtggcgtgac catttcaaag ctgattcgtc acatataaag ttgtcattag ccccacaggg 1981 tggtttcgac aaaaacggaa acacccctca tgggaagggc accatgaaaa ccctcacgct 2041 gcattcactc actgcacgtg tgatgggctt agtgtgtgag agaaaggacg agttccaatt 2101 gcagggggat gaactgcagg tttacaactt tgacacaaac aaagtctctg catttagaaa 2161 attggcagct gacaacaagt atagttttgt ggagacaatg aaagttggtg cggtcctcaa 2221 gaatgtgcga accctggagg acctaaaatc tgccctcaaa ggagtcaagt tcaaggagtg 2281 tgaaataatc tacaaagggg ctaagtacag ggtcgcctcg gatggctgtg gcagtgtctc 2341 ggtctccaag atcaaggatg ttgcatcaca gacagccaat gaagtgcata cagcgctcct 2401 gagactgagg caggcccggg ccagatatta catcagctgc ttccaagatc ttatctatac 2461 actgatccag gttgctggag cctcatttgt ggtgcacagg atctcaaaga gattctcctg 2521 ggaccgttgg attaaaccca gtgagagccc tcaagaggaa gaacaaccta gcagtgagga 2581 ggccacagga agatgggaaa ttgagccaaa ggacacagac cctgaaggta agaagggtaa 2641 aaacaagaag ggaaggggga ggaaacacac agccttctct agcaagggtc ttagtgatga 2701 agagtacgat gagttcaaga gaatcagaga ggagaagaac ggcaagtact ctatagaaga 2761 atacctccag gaccgtgata gattttatga ggaagtggca gtcgcaaggg ccacggaaga 2821 agacttctgt gaagaagagg tggcaaaaat tagacagaga attttcagac ccacaaagaa 2881 acagaggaag gaggaacggg gcgtccttgg actagtcacc ggttcggaaa tcaggaagag 2941 aagaccagat gacttccaac ccaaaggtaa tttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgag aagctggaat ttgaagcccc tccaagtgtg tggtcacgca tcgtacccct 3061 tggtactggt tggggtttct gggtctcctc caacctcctc atctctctgg aacgagtcct 3121 gccaaaagga gtgagtgagc tgttcggagt tgacatcaaa caaattcaga tacacaagtc 3181 aggtgagttt tgcaggttca ggtttccaag acctatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggagcccctg aaggcacggt gtgttctatc ctcgtcaaaa gaccgactgg 3301 agagatgata ccactcgcag tgaggatggg cacccacgct tccatgaaaa ttcagggcag 3361 aacagttggt ggtcaaatgg gcatgttgct cacaggggca aatgccaaaa acatggacct 3421 gggcacgaac cctggtgact gtggctgccc gtacattttt aaaaggggca atgacattgt 3481 ggtagctggg gttcacaccg cagctgcaag gggtggcaac actgtgatct gtgccacgca 3541 gggggctgac ggagaggccg ttcttgaagg aggagaggac aaaggaacat actgtggtgc 3601 cccaatactt ggacttggga aggcccctaa gctctgcact aaaacaaagt tctggcgttc 3661 ctcacctgat gcactacccc cgggaacgta tgaaccagcc tatctaggtg gaaaagaccc 3721 aagagttgag aagggcccat cactccagca ggttatgaga gaacaactta aacccttcac 3781 cgaacccaga ggaaaaccgc caaagcccag cgttctcgat gaggcaaaga aaactgtgat 3841 gaatgtgttg gagcaaacca taaaccctgc caaaccctgg tcatactcac aagcatgtgc 3901 ctcacttgac aaaacgactt caagtggtag cccacaccac ctaaggaaga atgatcactg 3961 gaatggtgag tctttcaccg gccctttagc cgaccaagct tcaaaggcaa acttaatgta 4021 tgaacaggca aaacacgtga gccccgttta caccgcagcc ctcaaagatg aactagtcaa 4081 gactgacaag atttataata agataaagaa gaggttgcta tggggttctg acctgggtac 4141 catggtcagg tgtgccagag cctttggtgg gttaatggac agcatgaaag agagttgtgt 4201 gatgttgccc tgcagagttg gaatgaatat gaatgaggat gggccaatca tttttgacaa 4261 acatgcaaaa tataaatacc actatgatgc agactactcc agatgggact ccacgcagca 4321 aagatgcatc ttgtctgctg ccatggaggt tatggtgaaa ttctcagctg aaccggaatt 4381 ggcacaggtg gtggctgaag acctactcgc cccgagccaa ctcgacgtgg gcgattttgt 4441 ggtgtcagtt caggaaggcc ttccttcagg tgtcccatgt acctcccagt ggaactctat 4501 agcacactgg atcattaccc ttagtgcaat gtcagaagtc tctggtctct ccccagatgt 4561 gatccaagcc cactcatgct tctcttttta tggtgatgat gagatagtta gcacagatat 4621 taatctggac ccagcaaaat taaccttgaa acttagggaa tatggattgg tccccaccag 4681 accagacaaa actgagggcc cactagtcat tacagagaac ctccacgggt tgaccttcct 4741 acgcaggcac atcacacgag accctgctgg atggtttggt aagttagacc aggattcaat 4801 tttgagacag ctctattgga ccagaggacc caaccatgag aatccctatg agagcatggt 4861 tccgcactca cagcgcgcga cccagctaat ggcgttgttg ggtgaggcat cgctacacgg 4921 tccccagttt tacaagaaag ttagcaagat ggtcatcaat gagatcaaaa gtggtggtct 4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt tccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagtcc agctggctgc tcccgttgca gggcaaagta 5221 acataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg 5281 tgtcccctcg gaacgcaccg ggtgaggtac ttattgattt agaattagga ccagaattaa 5341 acccctatct caaccacctt gcaagaatgt ataatgggta tgtaggagga atggaggtgg 5401 aagttgttct tgccgggaat gcgttcacgg caggtaagat cttgtttgca gctgtgcccc 5461 ccagcttccc aacccatggt atctctgcag cacaggctac tatgctaccc catgtgattg 5521 tggatgtcag gcagttggag cctgttcggc tccccctccc tgacgtcagg aatgtgatgt 5581 ttcacttctg tcaagagaac aaggagccgc gtatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggagct ggtgatgatg ttttcaccgt ctcatgtcgt gtgctaacaa 5701 gaccctcacc agattttgat tttattttct tggtcccccc ctctgtagag agtaagttga 5761 aacagtttac cctcccaaac ctgcagccaa atgagatgac caattcaaga tttcccacag 5821 gtatcacaca gctttatacc agtccaaaca ccaatttggt tgtccagttc caaaatggca 5881 ggtgcctact tgatggtaca cttcttggta ctacccctgt cagagctgct gacatctgca 5941 gttttagagg ggtcacatca actgaagtag atgcaactga cagccccagg gtggcagggt 6001 cacatagaat tatggtacag cttagggagc cagatggaga ggagttttca cccacaggtc 6061 ccaaccctgc ccctgttggc accccagact ttcaagcagc catatttggc accctcagtc 6121 aaagaaacac tggtggagct gggcagaatt ctaacagagc ccacttcgca tatttctaca 6181 caagaaaccc cacctttgca ccaggcatag ggactgttgt attttctttt gacaccactg 6241 attttcaaaa tcgtcaacct accaaatttt ccccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt caatcagttt tccctgccat attataatgg atcactcggt gcagtggacg 6361 ctggaaaact ggctccacct gtggcaccca attatccagg tgagcagatt ctttatttca 6421 gagggagtgt acctttcaaa ggtggttatg gagaaggtga gattgacagt ttgcttcccc 6481 aggaatggat tacccatttc tatgcagagc aggcccccac acaaggtgac gcagccctgc 6541 tgcgctacta caaccctgac actggtagag tcctctttga gtgcaaactc catcgtgaag 6601 gattcatcac aatcaactac acgggatcca atgctcttgc tgtgccggtc aatggagtct 6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg 6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctt ggcagcggtt tatcttctct tattggtgcc ggtgccaatg ctataaacca 6841 gaaagttgaa tatgattaca ataggcattt gcaatcagct tctttccaac atgataagga 6901 catgctcagt tcacaggtgg aagccacaaa acacctgcag agggaaatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gcgggttttc ccccactgat gcagcaaggg gggctgtcaa 7021 cgctcctatg acacaaatct tggactggaa tggcaccaga tattgggccc caggtgcaat 7081 gaaaaccacg gcctactcag gtcgttttgt cagccaatcc actcacaggc ccattcccaa 7141 tgttgtgcac aagagtgagg gatccacaca ccaaactggg tcatccaccg gatctatctc 7201 ttctctttcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtacttc 7261 tagaacaaga gactgggtgt ctgaacaaca aagactcagc cctttcatga gaggttctct 7321 tcaaactgct tatgtaactc ctccctcaag ctctgcctct tcagtaagct ctgtttctac 7381 agtcccacat tatgttttag attcatggac cccttctttt aacactaagc atttacccct 7441 gtttgcccac gttaagaaaa ggggacaatc tcaagtttaa tctaccactc atggttttat 7501 tgatttgttt tgtaattagt gaaatgttga ttcttttcta attcggcatt t // LOCUS OR050582 7550 bp RNA linear VRL 12-SEP-2023 DEFINITION Norovirus GIX isolate JS230201/CHN/2023, complete genome. ACCESSION OR050582 VERSION OR050582.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Genetic characterization of norovirus GIX.1[GII.P15] genotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Direct Submission JOURNAL Submitted (26-MAY-2023) Key Laboratory of Enteric Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC v. 21.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7550 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="JS230201/CHN/2023" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China" /collection_date="24-Feb-2023" /note="genotype: GIX.1[GII.P15]" gene 5..5101 /gene="ORF1" CDS 5..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WHV00903.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSTQKPPVVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFSGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAILDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSNSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGF GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6749 /gene="ORF2" CDS 5082..6749 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WHV00904.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGIMQLYTSPNANLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="ORF3" CDS 6749..7480 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WHV00905.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSATGSFSSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 gtgaatgaag atggcgtcga atgacgtcgt tactgccctt ggcagccaga aagctaccaa 61 tgacagctat agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa 121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcac 181 acaaaaaccg ccggtcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc 241 aaacggtgag gacgcagtcc acttcgtaaa ggaaacggag accatcaagg gactgccaga 301 tttgtccacc gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga 361 aagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg 421 tgagttctac cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc 481 accggcagca attagcctag caacgataga cttaacacct atatcgttgt actggagacc 541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa 601 gttcccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattcg tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta 721 ccaatcctgg aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc 781 gaatgcagtt ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg 841 caaattaaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga ccttttcagg 901 cgtggtggaa acagtcatcc ttgctgcaga gctcttcaat gtcttttgga ccccacctga 961 tgtctccaac ttcatcgctt ccataattgg cgacttcgag atgcaaggac cagaggatct 1021 tgctgtggag cttgttcctg ttatcatggg aggtattggt atggtgttgg ggttcacagc 1081 tgagaagata gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct 1141 tggcaattac gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga 1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctatccttg acatggaggc 1261 aattggaaac aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctacat 1321 gaagaccttg gacatggagg aggagaaggc caggaggctc tccactaaat cgtcatcacc 1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct 1441 acacaaagcc aaagaggaaa tgttcagtcg ggcgaggcct gttgtcgtta tggtgtctgg 1501 aagacccggc atcggtaaga catatctagc tagacagctt gccaaatcga ttgcgaacag 1561 catgagtggt gatcagagag tgggactcgt tccccgcaat ggggttgacc actgggatgc 1621 ctataggggt gaaagagttg tcctatggga tgactacggc atgggaaata ctatcaaaga 1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtc accctcaact gtgacaggat 1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa 1801 ccccgctccc ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt 1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccccgggc aacctgacat 1921 gtggcgtgac cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg 1981 tggttttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct 2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact 2101 gcagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa 2161 actagcagct gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa 2221 gaatgtaaaa accctggaag atctgaaatc tgcgctaaag ggggttaaat tcaaagagtg 2281 tgaaataatt tacaaggggg ccaagtatag agttgcctcg gatggctgtg gcagtgtctc 2341 agtttccaag atcaaggatg ttgtgtcgca gacatccaat gaagtgcaca cagcgctcct 2401 gagattgagg caagcccggg ccaggtatta tatcagctgc ttccaagacc tcatatacac 2461 cctaatacag gttgctggag cctcctttgt ggtacatagg atctcaaaga gattctcatg 2521 ggaccgctgg atcaaaccca gtaacagccc tcaggaggaa gaacaaccca gcagtgaggt 2581 ggccacaggg agatgggaaa ttgagccaaa agacacggac cctgaaggta aaaagggtaa 2641 aaacaagaag ggaaggggaa ggaaacacac ggccttctct agtaagggtc ttagtgatga 2701 agagtatgat gagttcaaaa gaatcagaga ggagaagaac ggcaagtact ccatagaaga 2761 atacctccag gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga 2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa 2881 gcagaggaag gaggagcgtg gcgtcctagg gctggtcact ggttcagaaa tcaggaagag 2941 aagaccagat gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgaa aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct 3061 cggcactggc tggggtttct gggtctcctc caaccttctc ataacaacaa cacacgtcct 3121 gccaaaagga ttgaaggagc tgttcggggt tgatatcaaa caagtccaga tacacaagtc 3181 aggtgagttc tgtaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggggcccctg aaggtacggt gtgttccatc cttgtcaaaa gaccgactgg 3301 agaaatgatc ccacttgcag tgaggatggg cacccacgct tctatgaaaa tccagggtag 3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt 3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt 3481 ggtagctggg gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca 3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaggggacgt actgtggtgc 3601 cccaatactt ggattcggga aggcccccaa actcagtacc aagacaaagt tctggcgatc 3661 ctcccctgat gcgcttcccc cggggacgta tgagccagca tacctaggtg gaaaggaccc 3721 aagggttgag aagggcccgt cactccagca ggtcatgaga gaacaactta aaccttttac 3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat 3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc 3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg 3961 gaatggtgaa tcttttaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta 4021 tgaacaggct aaacacatga gtcccgttta cactgcggcc ctcaaagatg aactggtcaa 4081 gactgataag atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac 4141 tatggtcagg tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt 4201 gatgttaccc tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa 4261 gcatgcaaag tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca 4321 aaggagcatt ttatctgctg ccatggaggt tatggtaaaa ttctcagctg aaccggaact 4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgactttgt 4441 ggtgtcagtt caagaaggtc ttccctcagg tgttccgtgt acttcccaat ggaactccat 4501 agcacattgg atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt 4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat 4621 caacttggac ccagcaaagt taaccttaaa actcagggaa tatggattgg tccccaccag 4681 accagacaaa actgaaggcc cattagtcat cacagaggat ctccatggat tgaccttcct 4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat 4801 cttaaggcaa ctctattgga ctagaggacc caaccatgaa aacccctacg agtgcatggt 4861 cccacactca cagcgcgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg 4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gagatcaaga gtggtggtct 4981 ggaattttac gtgcccagac aagaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagtcc agctggctgc tcccgtagca gggcaaagta 5221 atataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg 5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa 5341 atccctatct caatcatctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gcagtgcccc 5461 ccagcttccc aacccatggc atttctgcag cacaggcaac catgttacca catgtgattg 5521 tggatgtcag gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt 5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctaacaa 5701 ggccctcacc agattttgat tttattttct tggttccccc ctctgtagag agtaagttga 5761 aacagttcac cctcccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg 5821 gcatcatgca actctacacc agtccaaatg ccaatttggt tgtccagttc caaaatggca 5881 ggtgtctgct tgatggcaca ctcctcggca ccacccctgt cagagctgct gacatctgca 5941 gtttcagagg agttacctca actgaagttg atgcaactga cagccccaga gtggcagggt 6001 cccatagaat tatggtgcag ctcaaggagc cagatggaga ggagttctca cccacaggtc 6061 ctaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagcc 6121 aaagaaacac tggcggggct gggcagaact ccaacagagc ccacttcgca tacttctaca 6181 ctagaaaccc cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg 6241 actttcaaaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt taatcaattc tctctaccat attataatgg atcactcggt gcagtggatg 6361 ctgggaaact agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta 6421 gagggaatat tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc 6481 aggagtggat cacccatttt tatgcagagc aggctcccac acaaggtgac gcagccctgc 6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg 6601 gattcatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct 6661 tcagatttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaacg 6721 gccgcagggg tagaagaaga gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctc ggcagcggtt tgtcttcact tattggtgcc ggtgccaatg ccataaatca 6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga 6901 tatgctcaac tcacaagtgg aagccacaaa gcatttacaa agggagatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa 7021 cgcccctatg acacaaattt tggactggaa tggcaccaga tactgggccc caggtgcaat 7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcacaggc ctatccccaa 7141 tgttgttcac aagagtgatg gacccataca tcaaactggg tcagccacag ggtccttctc 7201 ttctctctcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtgcttc 7261 tagaacaagg gactgggtgt ctgaacagca aaggctcagc cctttcatga gaggctctct 7321 tcacactgca tatgtgactc ctccctcaag ctctgcctcc tcagtaagct ctgtatctac 7381 agtcccacat tatgttctgg attcatggac cccttctttt aacactaagc atctaccttt 7441 gtttgctcat gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat 7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcattt // LOCUS OR050583 7550 bp RNA linear VRL 12-SEP-2023 DEFINITION Norovirus GIX isolate JS230202/CHN/2023, complete genome. ACCESSION OR050583 VERSION OR050583.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Genetic characterization of norovirus GIX.1[GII.P15] genotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Direct Submission JOURNAL Submitted (26-MAY-2023) Key Laboratory of Enteric Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC v. 21.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7550 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="JS230202/CHN/2023" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China" /collection_date="24-Feb-2023" /note="genotype: GIX.1[GII.P15]" gene 5..5101 /gene="ORF1" CDS 5..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WHV00906.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSTQKPPVVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFSGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAILDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSNSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGF GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6749 /gene="ORF2" CDS 5082..6749 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WHV00907.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGIMQLYTSPNANLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="ORF3" CDS 6749..7480 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WHV00908.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSATGSFSSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 gtgaatgaag atggcgtcga atgacgtcgt tactgccctt ggcagccaga aagctaccaa 61 tgacagctat agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa 121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcac 181 acaaaaaccg ccggtcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc 241 aaacggtgag gacgcagtcc acttcgtaaa ggaaacggag accatcaagg gactgccaga 301 tttgtccacc gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga 361 aagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg 421 tgagttctac cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc 481 accggcagca attagcctag caacgataga cttaacacct atatcgttgt actggagacc 541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa 601 gttcccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattcg tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta 721 ccaatcctgg aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc 781 gaatgcagtt ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg 841 caaattaaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga ccttttcagg 901 cgtggtggaa acagtcatcc ttgctgcaga gctcttcaat gtcttttgga ccccacctga 961 tgtctccaac ttcatcgctt ccataattgg cgacttcgag atgcaaggac cagaggatct 1021 tgctgtggag cttgttcctg ttatcatggg aggtattggt atggtgttgg ggttcacagc 1081 tgagaagata gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct 1141 tggcaattac gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga 1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctatccttg acatggaggc 1261 aattggaaac aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctacat 1321 gaagaccttg gacatggagg aggagaaggc caggaggctc tccactaaat cgtcatcacc 1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct 1441 acacaaagcc aaagaggaaa tgttcagtcg ggcgaggcct gttgtcgtta tggtgtctgg 1501 aagacccggc atcggtaaga catatctagc tagacagctt gccaaatcga ttgcgaacag 1561 catgagtggt gatcagagag tgggactcgt tccccgcaat ggggttgacc actgggatgc 1621 ctataggggt gaaagagttg tcctatggga tgactacggc atgggaaata ctatcaaaga 1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtc accctcaact gtgacaggat 1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa 1801 ccccgctccc ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt 1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccccgggc aacctgacat 1921 gtggcgtgac cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg 1981 tggttttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct 2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact 2101 gcagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa 2161 actagcagct gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa 2221 gaatgtaaaa accctggaag atctgaaatc tgcgctaaag ggggttaaat tcaaagagtg 2281 tgaaataatt tacaaggggg ccaagtatag agttgcctcg gatggctgtg gcagtgtctc 2341 agtttccaag atcaaggatg ttgtgtcgca gacatccaat gaagtgcaca cagcgctcct 2401 gagattgagg caagcccggg ccaggtatta tatcagctgc ttccaagacc tcatatacac 2461 cctaatacag gttgctggag cctcctttgt ggtacatagg atctcaaaga gattctcatg 2521 ggaccgctgg atcaaaccca gtaacagccc tcaggaggaa gaacaaccca gcagtgaggt 2581 ggccacaggg agatgggaaa ttgagccaaa agacacggac cctgaaggta aaaagggtaa 2641 aaacaagaag ggaaggggaa ggaaacacac ggccttctct agtaagggtc ttagtgatga 2701 agagtatgat gagttcaaaa gaatcagaga ggagaagaac ggcaagtact ccatagaaga 2761 atacctccag gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga 2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa 2881 gcagaggaag gaggagcgtg gcgtcctagg gctggtcact ggttcagaaa tcaggaagag 2941 aagaccagat gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgaa aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct 3061 cggcactggc tggggtttct gggtctcctc caaccttctc ataacaacaa cacacgtcct 3121 gccaaaagga ttgaaggagc tgttcggggt tgatatcaaa caagtccaga tacacaagtc 3181 aggtgagttc tgtaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggggcccctg aaggtacggt gtgttccatc cttgtcaaaa gaccgactgg 3301 agaaatgatc ccacttgcag tgaggatggg cacccacgct tctatgaaaa tccagggtag 3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt 3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt 3481 ggtagctggg gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca 3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaggggacgt actgtggtgc 3601 cccaatactt ggattcggga aggcccccaa actcagtacc aagacaaagt tctggcgatc 3661 ctcccctgat gcgcttcccc cggggacgta tgagccagca tacctaggtg gaaaggaccc 3721 aagggttgag aagggcccgt cactccagca ggtcatgaga gaacaactta aaccttttac 3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat 3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc 3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg 3961 gaatggtgaa tcttttaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta 4021 tgaacaggct aaacacatga gtcccgttta cactgcggcc ctcaaagatg aactggtcaa 4081 gactgataag atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac 4141 tatggtcagg tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt 4201 gatgttaccc tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa 4261 gcatgcaaag tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca 4321 aaggagcatt ttatctgctg ccatggaggt tatggtgaaa ttctcagctg aaccggaact 4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgactttgt 4441 ggtgtcagtt caagaaggtc ttccctcagg tgttccgtgt acttcccaat ggaactccat 4501 agcacattgg atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt 4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat 4621 caacttggac ccagcaaagt taaccttaaa actcagggaa tatggattgg tccccaccag 4681 accagacaaa actgaaggcc cattagtcat cacagaggat ctccatggat tgaccttcct 4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat 4801 cttaaggcaa ctctattgga ctagaggacc caaccatgaa aacccctacg agtgcatggt 4861 cccacactca cagcgcgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg 4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gagatcaaga gtggtggtct 4981 ggaattttac gtgcccagac aagaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagtcc agctggctgc tcccgtagca gggcaaagta 5221 atataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg 5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa 5341 atccctatct caatcatctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gcagtgcccc 5461 ccagcttccc aacccatggc atttctgcag cacaggcaac catgttacca catgtgattg 5521 tggatgtcag gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt 5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctaacaa 5701 ggccctcacc agattttgat tttattttct tggttccccc ctctgtagag agtaagttga 5761 aacagttcac cctcccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg 5821 gcatcatgca actctacacc agtccaaatg ccaatttggt tgtccagttc caaaatggca 5881 ggtgtctgct tgatggcaca ctcctcggca ccacccctgt cagagctgct gacatctgca 5941 gtttcagagg agttacctca actgaagttg atgcaactga cagccccaga gtggcagggt 6001 cccatagaat tatggtgcag ctcaaggagc cagatggaga ggagttctca cccacaggtc 6061 ctaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagcc 6121 aaagaaacac tggcggggct gggcagaact ccaacagagc ccacttcgca tacttctaca 6181 ctagaaaccc cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg 6241 actttcaaaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt taatcaattc tctctaccat attataatgg atcactcggt gcagtggatg 6361 ctgggaaact agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta 6421 gagggaatat tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc 6481 aggagtggat cacccatttt tatgcagagc aggctcccac acaaggtgac gcagccctgc 6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg 6601 gattcatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct 6661 tcagatttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaacg 6721 gccgcagggg tagaagaaga gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctc ggcagcggtt tgtcttcact tattggtgcc ggtgccaatg ccataaatca 6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga 6901 tatgctcaac tcacaagtgg aagccacaaa gcatttacaa agggagatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa 7021 cgcccctatg acacaaattt tggactggaa tggcaccaga tactgggccc caggtgcaat 7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcacaggc ctatccccaa 7141 tgttgttcac aagagtgatg gacccataca tcaaactggg tcagccacag ggtccttctc 7201 ttctctctcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtgcttc 7261 tagaacaagg gactgggtgt ctgaacagca aaggctcagc cctttcatga gaggctctct 7321 tcacactgca tatgtgactc ctccctcaag ctctgcctcc tcagtaagct ctgtatctac 7381 agtcccacat tatgttctgg attcatggac cccttctttt aacactaagc atctaccttt 7441 gtttgctcat gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat 7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcattt // LOCUS OR050584 7550 bp RNA linear VRL 12-SEP-2023 DEFINITION Norovirus GIX isolate JS230203/CHN/2023, complete genome. ACCESSION OR050584 VERSION OR050584.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Genetic characterization of norovirus GIX.1[GII.P15] genotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Direct Submission JOURNAL Submitted (26-MAY-2023) Key Laboratory of Enteric Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC v. 21.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7550 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="JS230203/CHN/2023" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China" /collection_date="24-Feb-2023" /note="genotype: GIX.1[GII.P15]" gene 5..5101 /gene="ORF1" CDS 5..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WHV00909.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSTQKPPVVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFSGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAILDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSNSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGF GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6749 /gene="ORF2" CDS 5082..6749 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WHV00910.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGIMQLYTSPNANLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="ORF3" CDS 6749..7480 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WHV00911.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSATGSFSSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 gtgaatgaag atggcgtcga atgacgtcgt tactgccctt ggcagccaga aagctaccaa 61 tgacagctat agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa 121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcac 181 acaaaaaccg ccggtcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc 241 aaacggtgag gacgcagtcc acttcgtaaa ggaaacggag accatcaagg gactgccaga 301 tttgtccacc gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga 361 aagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg 421 tgagttctac cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc 481 accggcagca attagcctag caacgataga cttaacacct atatcgttgt actggagacc 541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa 601 gttcccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattcg tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta 721 ccaatcctgg aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc 781 gaatgcagtt ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg 841 caaattaaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga ccttttcagg 901 cgtggtggaa acagtcatcc ttgctgcaga gctcttcaat gtcttttgga ccccacctga 961 tgtctccaac ttcatcgctt ccataattgg cgacttcgag atgcaaggac cagaggatct 1021 tgctgtggag cttgttcctg ttatcatggg aggtattggt atggtgttgg ggttcacagc 1081 tgagaagata gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct 1141 tggcaattac gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga 1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctatccttg acatggaggc 1261 aattggaaac aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctacat 1321 gaagaccttg gacatggagg aggagaaggc caggaggctc tccactaaat cgtcatcacc 1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct 1441 acacaaagcc aaagaggaaa tgttcagtcg ggcgaggcct gttgtcgtta tggtgtctgg 1501 aagacccggc atcggtaaga catatctagc tagacagctt gccaaatcga ttgcgaacag 1561 catgagtggt gatcagagag tgggactcgt tccccgcaat ggggttgacc actgggatgc 1621 ctataggggt gaaagagttg tcctatggga tgactacggc atgggaaata ctatcaaaga 1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtc accctcaact gtgacaggat 1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa 1801 ccccgctccc ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt 1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccccgggc aacctgacat 1921 gtggcgtgac cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg 1981 tggttttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct 2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact 2101 gcagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa 2161 actagcagct gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa 2221 gaatgtaaaa accctggaag atctgaaatc tgcgctaaag ggggttaaat tcaaagagtg 2281 tgaaataatt tacaaggggg ccaagtatag agttgcctcg gatggctgtg gcagtgtctc 2341 agtttccaag atcaaggatg ttgtgtcgca gacatccaat gaagtgcaca cagcgctcct 2401 gagattgagg caagcccggg ccaggtatta tatcagctgc ttccaagacc tcatatacac 2461 cctaatacag gttgctggag cctcctttgt ggtacatagg atctcaaaga gattctcatg 2521 ggaccgctgg atcaaaccca gtaacagccc tcaggaggaa gaacaaccca gcagtgaggt 2581 ggccacaggg agatgggaaa ttgagccaaa agacacggac cctgaaggta aaaagggtaa 2641 aaacaagaag ggaaggggaa ggaaacacac ggccttctct agtaagggtc ttagtgatga 2701 agagtatgat gagttcaaaa gaatcagaga ggagaagaac ggcaagtact ccatagaaga 2761 atacctccag gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga 2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa 2881 gcagaggaag gaggagcgtg gcgtcctagg gctggtcact ggttcagaaa tcaggaagag 2941 aagaccagat gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgaa aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct 3061 cggcactggc tggggtttct gggtctcctc caaccttctc ataacaacaa cacacgtcct 3121 gccaaaagga ttgaaggagc tgttcggggt tgatatcaaa caagtccaga tacacaagtc 3181 aggtgagttc tgtaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggggcccctg aaggtacggt gtgttccatc cttgtcaaaa gaccgactgg 3301 agaaatgatc ccacttgcag tgaggatggg cacccacgct tctatgaaaa tccagggtag 3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt 3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt 3481 ggtagctggg gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca 3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaggggacgt actgtggtgc 3601 cccaatactt ggattcggga aggcccccaa actcagtacc aagacaaagt tctggcgatc 3661 ctcccctgat gcgcttcccc cggggacgta tgagccagca tacctaggtg gaaaggaccc 3721 aagggttgag aagggcccgt cactccagca ggtcatgaga gaacaactta aaccttttac 3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat 3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc 3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg 3961 gaatggtgaa tcttttaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta 4021 tgaacaggct aaacacatga gtcccgttta cactgcggcc ctcaaagatg aactggtcaa 4081 gactgataag atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac 4141 tatggtcagg tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt 4201 gatgttaccc tgcagagttg gtatgaacat gaatgaagat ggaccaatca tttttgacaa 4261 gcatgcaaag tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca 4321 aaggagcatt ttatctgctg ccatggaggt tatggtgaaa ttctcagctg aaccggaact 4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgactttgt 4441 ggtgtcagtt caagaaggtc ttccctcagg tgttccgtgt acttcccaat ggaactccat 4501 agcacactgg atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt 4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat 4621 caacttggac ccagcaaagt taaccttaaa actcagggaa tatggattgg tccccaccag 4681 accagacaaa actgaaggcc cattagtcat cacagaggat ctccatggat tgaccttcct 4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat 4801 cttaaggcaa ctctattgga ctagaggacc caaccatgaa aacccctacg agtgcatggt 4861 cccacactca cagcgcgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg 4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gagatcaaga gtggtggtct 4981 ggaattttac gtgcccagac aagaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagtcc agctggctgc tcccgtagca gggcaaagta 5221 atataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg 5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa 5341 atccctatct caatcatctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gcagtgcccc 5461 ccagcttccc aacccatggc atttctgcag cacaggcaac catgttacca catgtgattg 5521 tggatgtcag gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt 5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctaacaa 5701 ggccctcacc agattttgat tttattttct tggttccccc ctctgtagag agtaagttga 5761 aacagttcac cctcccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg 5821 gcatcatgca actctacacc agtccaaatg ccaatttggt tgtccagttc caaaatggca 5881 ggtgtctgct tgatggcaca ctcctcggca ccacccctgt cagagctgct gacatctgca 5941 gtttcagagg agttacctca actgaagttg atgcaactga cagccccaga gtggcagggt 6001 cccatagaat tatggtgcag ctcaaggagc cagatggaga ggagttctca cccacaggtc 6061 ctaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagcc 6121 aaagaaacac tggcggggct gggcagaact ccaacagagc ccacttcgca tacttctaca 6181 ctagaaaccc cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg 6241 actttcaaaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt taatcaattc tctctaccat attataatgg atcactcggt gcagtggatg 6361 ctgggaaact agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta 6421 gagggaatat tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc 6481 aggagtggat cacccatttt tatgcagagc aggctcccac acaaggtgac gcagccctgc 6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg 6601 gattcatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct 6661 tcagatttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaacg 6721 gccgcagggg tagaagaaga gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctc ggcagcggtt tgtcttcact tattggtgcc ggtgccaatg ccataaatca 6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga 6901 tatgctcaac tcacaagtgg aagccacaaa gcatttacaa agggagatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa 7021 cgcccctatg acacaaattt tggactggaa tggcaccaga tactgggccc caggtgcaat 7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcacaggc ctatccccaa 7141 tgttgttcac aagagtgatg gacccataca tcaaactggg tcagccacag ggtccttctc 7201 ttctctctcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtgcttc 7261 tagaacaagg gactgggtgt ctgaacagca aaggctcagc cctttcatga gaggctctct 7321 tcacactgca tatgtgactc ctccctcaag ctctgcctcc tcagtaagct ctgtatctac 7381 agtcccacat tatgttctgg attcatggac cccttctttt aacactaagc atctaccttt 7441 gtttgctcat gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat 7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcattt // LOCUS OR050585 7550 bp RNA linear VRL 12-SEP-2023 DEFINITION Norovirus GIX isolate JS230204/CHN/2023, complete genome. ACCESSION OR050585 VERSION OR050585.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Genetic characterization of norovirus GIX.1[GII.P15] genotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Direct Submission JOURNAL Submitted (26-MAY-2023) Key Laboratory of Enteric Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC v. 21.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7550 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="JS230204/CHN/2023" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China" /collection_date="24-Feb-2023" /note="genotype: GIX.1[GII.P15]" gene 5..5101 /gene="ORF1" CDS 5..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WHV00912.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSTQKPPVVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFSGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAILDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSNSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGF GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6749 /gene="ORF2" CDS 5082..6749 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WHV00913.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGIMQLYTSPNANLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="ORF3" CDS 6749..7480 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WHV00914.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSATGSFSSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 gtgaatgaag atggcgtcga atgacgtcgt tactgccctt ggcagccaga aagctaccaa 61 tgacagctat agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa 121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcac 181 acaaaaaccg ccggtcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc 241 aaacggtgag gacgcagtcc acttcgtaaa ggaaacggag accatcaagg gactgccaga 301 tttgtccacc gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga 361 aagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg 421 tgagttctac cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc 481 accggcagca attagcctag caacgataga cttaacacct atatcgttgt actggagacc 541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa 601 gttcccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattcg tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta 721 ccaatcctgg aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc 781 gaatgcagtt ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg 841 caaattaaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga ccttttcagg 901 cgtggtggaa acagtcatcc ttgctgcaga gctcttcaat gtcttttgga ccccacctga 961 tgtctccaac ttcatcgctt ccataattgg cgacttcgag atgcaaggac cagaggatct 1021 tgctgtggag cttgttcctg ttatcatggg aggtattggt atggtgttgg ggttcacagc 1081 tgagaagata gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct 1141 tggcaattac gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga 1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctatccttg acatggaggc 1261 aattggaaac aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctacat 1321 gaagaccttg gacatggagg aggagaaggc caggaggctc tccactaaat cgtcatcacc 1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct 1441 acacaaagcc aaagaggaaa tgttcagtcg ggcgaggcct gttgtcgtta tggtgtctgg 1501 aagacccggc atcggtaaga catatctagc tagacagctt gccaaatcga ttgcgaacag 1561 catgagtggt gatcagagag tgggactcgt tccccgcaat ggggttgacc actgggatgc 1621 ctataggggt gaaagagttg tcctatggga tgactacggc atgggaaata ctatcaaaga 1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtc accctcaact gtgacaggat 1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa 1801 ccccgctccc ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt 1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccccgggc aacctgacat 1921 gtggcgtgac cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg 1981 tggttttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct 2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact 2101 gcagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa 2161 actagcagct gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa 2221 gaatgtaaaa accctggaag atctgaaatc tgcgctaaag ggggttaaat tcaaagagtg 2281 tgaaataatt tacaaggggg ccaagtatag agttgcctcg gatggctgtg gcagtgtctc 2341 agtttccaag atcaaggatg ttgtgtcgca gacatccaat gaagtgcaca cagcgctcct 2401 gagattgagg caagcccggg ccaggtatta tatcagctgc ttccaagacc tcatatacac 2461 cctaatacag gttgctggag cctcctttgt ggtacatagg atctcaaaga gattctcatg 2521 ggaccgctgg atcaaaccca gtaacagccc tcaggaggaa gaacaaccca gcagtgaggt 2581 ggccacaggg agatgggaaa ttgagccaaa agacacggac cctgaaggta aaaagggtaa 2641 aaacaagaag ggaaggggaa ggaaacacac ggccttctct agtaagggtc ttagtgatga 2701 agagtatgat gagttcaaaa gaatcagaga ggagaagaac ggcaagtact ccatagaaga 2761 atacctccag gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga 2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa 2881 gcagaggaag gaggagcgtg gcgtcctagg gctggtcact ggttcagaaa tcaggaagag 2941 aagaccagat gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgaa aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct 3061 cggcactggc tggggtttct gggtctcctc caaccttctc ataacaacaa cacacgtcct 3121 gccaaaagga ttgaaggagc tgttcggggt tgatatcaaa caagtccaga tacacaagtc 3181 aggtgagttc tgtaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggggcccctg aaggtacggt gtgttccatc cttgtcaaaa gaccgactgg 3301 agaaatgatc ccacttgcag tgaggatggg cacccacgct tctatgaaaa tccagggtag 3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt 3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt 3481 ggtagctggg gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca 3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaggggacgt actgtggtgc 3601 cccaatactt ggattcggga aggcccccaa actcagtacc aagacaaagt tctggcgatc 3661 ctcccctgat gcgcttcccc cggggacgta tgagccagca tacctaggtg gaaaggaccc 3721 aagggttgag aagggcccgt cactccagca ggtcatgaga gaacaactta aaccttttac 3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat 3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc 3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg 3961 gaatggtgaa tcttttaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta 4021 tgaacaggct aaacacatga gtcccgttta cactgcggcc ctcaaagatg aactggtcaa 4081 gactgataag atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac 4141 tatggtcagg tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt 4201 gatgttaccc tgcagagttg gtatgaacat gaatgaagat ggaccaatca tttttgacaa 4261 gcatgcaaag tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca 4321 aaggagcatt ttatctgctg ccatggaggt tatggtgaaa ttctcagctg aaccggaact 4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgactttgt 4441 ggtgtcagtt caagaaggtc ttccctcagg tgttccgtgt acttcccaat ggaactccat 4501 agcacattgg atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt 4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat 4621 caacttggac ccagcaaagt taaccttaaa actcagggaa tatggattgg tccccaccag 4681 accagacaaa actgaaggcc cattagtcat cacagaggat ctccatggat tgaccttcct 4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat 4801 cttaaggcaa ctctattgga ctagaggacc caaccatgaa aacccctacg agtgcatggt 4861 cccacactca cagcgcgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg 4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gagatcaaga gtggtggtct 4981 ggaattttac gtgcccagac aagaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagtcc agctggctgc tcccgtagca gggcaaagta 5221 atataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg 5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa 5341 atccctatct caatcatctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gcagtgcccc 5461 ccagcttccc aacccatggc atttctgcag cacaggcaac catgttacca catgtgattg 5521 tggatgtcag gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt 5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctaacaa 5701 ggccctcacc agattttgat tttattttct tggttccccc ctctgtagag agtaagttga 5761 aacagttcac cctcccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg 5821 gcatcatgca actctacacc agtccaaatg ccaatttggt tgtccagttc caaaatggca 5881 ggtgtctgct tgatggcaca ctcctcggca ccacccctgt cagagctgct gacatctgca 5941 gtttcagagg agttacctca actgaagttg atgcaactga cagccccaga gtggcagggt 6001 cccatagaat tatggtgcag ctcaaggagc cagatggaga ggagttctca cccacaggtc 6061 ctaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagcc 6121 aaagaaacac tggcggggct gggcagaact ccaacagagc ccacttcgca tacttctaca 6181 ctagaaaccc cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg 6241 actttcaaaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt taatcaattc tctctaccat attataatgg atcactcggt gcagtggatg 6361 ctgggaaact agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta 6421 gagggaatat tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc 6481 aggagtggat cacccatttt tatgcagagc aggctcccac acaaggtgac gcagccctgc 6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg 6601 gattcatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct 6661 tcagatttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaacg 6721 gccgcagggg tagaagaaga gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctc ggcagcggtt tgtcttcact tattggtgcc ggtgccaatg ccataaatca 6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga 6901 tatgctcaac tcacaagtgg aagccacaaa gcatttacaa agggagatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa 7021 cgcccctatg acacaaattt tggactggaa tggcaccaga tactgggccc caggtgcaat 7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcacaggc ctatccccaa 7141 tgttgttcac aagagtgatg gacccataca tcaaactggg tcagccacag ggtccttctc 7201 ttctctctcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtgcttc 7261 tagaacaagg gactgggtgt ctgaacagca aaggctcagc cctttcatga gaggctctct 7321 tcacactgca tatgtgactc ctccctcaag ctctgcctcc tcagtaagct ctgtatctac 7381 agtcccacat tatgttctgg attcatggac cccttctttt aacactaagc atctaccttt 7441 gtttgctcat gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat 7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcattt // LOCUS OR050586 7550 bp RNA linear VRL 12-SEP-2023 DEFINITION Norovirus GIX isolate JS230205/CHN/2023, complete genome. ACCESSION OR050586 VERSION OR050586.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Genetic characterization of norovirus GIX.1[GII.P15] genotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Direct Submission JOURNAL Submitted (26-MAY-2023) Key Laboratory of Enteric Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC v. 21.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7550 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="JS230205/CHN/2023" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China" /collection_date="24-Feb-2023" /note="genotype: GIX.1[GII.P15]" gene 5..5101 /gene="ORF1" CDS 5..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WHV00915.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSTQKPPVVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFSGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAILDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSNSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGF GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6749 /gene="ORF2" CDS 5082..6749 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WHV00916.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGIMQLYTSPNANLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="ORF3" CDS 6749..7480 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WHV00917.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSATGSFSSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 gtgaatgaag atggcgtcga atgacgtcgt tactgccctt ggcagccaga aagctaccaa 61 tgacagctat agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa 121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcac 181 acaaaaaccg ccggtcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc 241 aaacggtgag gacgcagtcc acttcgtaaa ggaaacggag accatcaagg gactgccaga 301 tttgtccacc gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga 361 aagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg 421 tgagttctac cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc 481 accggcagca attagcctag caacgataga cttaacacct atatcgttgt actggagacc 541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa 601 gttcccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattcg tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta 721 ccaatcctgg aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc 781 gaatgcagtt ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg 841 caaattaaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga ccttttcagg 901 cgtggtggaa acagtcatcc ttgctgcaga gctcttcaat gtcttttgga ccccacctga 961 tgtctccaac ttcatcgctt ccataattgg cgacttcgag atgcaaggac cagaggatct 1021 tgctgtggag cttgttcctg ttatcatggg aggtattggt atggtgttgg ggttcacagc 1081 tgagaagata gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct 1141 tggcaattac gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga 1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctatccttg acatggaggc 1261 aattggaaac aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctacat 1321 gaagaccttg gacatggagg aggagaaggc caggaggctc tccactaaat cgtcatcacc 1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct 1441 acacaaagcc aaagaggaaa tgttcagtcg ggcgaggcct gttgtcgtta tggtgtctgg 1501 aagacccggc atcggtaaga catatctagc tagacagctt gccaaatcga ttgcgaacag 1561 catgagtggt gatcagagag tgggactcgt tccccgcaat ggggttgacc actgggatgc 1621 ctataggggt gaaagagttg tcctatggga tgactacggc atgggaaata ctatcaaaga 1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtc accctcaact gtgacaggat 1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa 1801 ccccgctccc ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt 1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccccgggc aacctgacat 1921 gtggcgtgac cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg 1981 tggttttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct 2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact 2101 gcagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa 2161 actagcagct gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa 2221 gaatgtaaaa accctggaag atctgaaatc tgcgctaaag ggggttaaat tcaaagagtg 2281 tgaaataatt tacaaggggg ccaagtatag agttgcctcg gatggctgtg gcagtgtctc 2341 agtttccaag atcaaggatg ttgtgtcgca gacatccaat gaagtgcaca cagcgctcct 2401 gagattgagg caagcccggg ccaggtatta tatcagctgc ttccaagacc tcatatacac 2461 cctaatacag gttgctggag cctcctttgt ggtacatagg atctcaaaga gattctcatg 2521 ggaccgctgg atcaaaccca gtaacagccc tcaggaggaa gaacaaccca gcagtgaggt 2581 ggccacaggg agatgggaaa ttgagccaaa agacacggac cctgaaggta aaaagggtaa 2641 aaacaagaag ggaaggggaa ggaaacacac ggccttctct agtaagggtc ttagtgatga 2701 agagtatgat gagttcaaaa gaatcagaga ggagaagaac ggcaagtact ccatagaaga 2761 atacctccag gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga 2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa 2881 gcagaggaag gaggagcgtg gcgtcctagg gctggtcact ggttcagaaa tcaggaagag 2941 aagaccagat gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgaa aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct 3061 cggcactggc tggggtttct gggtctcctc caaccttctc ataacaacaa cacacgtcct 3121 gccaaaagga ttgaaggagc tgttcggggt tgatatcaaa caagtccaga tacacaagtc 3181 aggtgagttc tgtaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggggcccctg aaggtacggt gtgttccatc cttgtcaaaa gaccgactgg 3301 agaaatgatc ccacttgcag tgaggatggg cacccacgct tctatgaaaa tccagggtag 3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt 3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt 3481 ggtagctggg gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca 3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaggggacgt actgtggtgc 3601 cccaatactt ggattcggga aggcccccaa actcagtacc aagacaaagt tctggcgatc 3661 ctcccctgat gcgcttcccc cggggacgta tgagccagca tacctaggtg gaaaggaccc 3721 aagggttgag aagggcccgt cactccagca ggtcatgaga gaacaactta aaccttttac 3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat 3841 gaacgtgttg gagcagacta tagaccctgc caaaccctgg tcatactccc aagcatgtgc 3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg 3961 gaatggtgaa tcttttaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta 4021 tgaacaggct aaacacatga gtcccgttta cactgcggcc ctcaaagatg aactggtcaa 4081 gactgataag atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac 4141 tatggtcagg tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt 4201 gatgttaccc tgcagagttg gtatgaacat gaatgaagat ggaccaatca tttttgacaa 4261 gcatgcaaag tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca 4321 aaggagcatt ttatctgctg ccatggaggt tatggtaaaa ttctcagctg aaccggaact 4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgactttgt 4441 ggtgtcagtt caagaaggtc ttccctcagg tgttccgtgt acttcccaat ggaactccat 4501 agcacattgg atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt 4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat 4621 caacttggac ccagcaaagt taaccttaaa actcagggaa tatggattgg tccccaccag 4681 accagacaaa actgaaggcc cattagtcat cacagaggat ctccatggat tgaccttcct 4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat 4801 cttaaggcaa ctctattgga ctagaggacc caaccatgaa aacccctacg agtgcatggt 4861 cccacactca cagcgcgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg 4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gagatcaaga gtggtggtct 4981 ggaattttac gtgcccagac aagaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagtcc agctggctgc tcccgtagca gggcaaagta 5221 atataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg 5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa 5341 atccctatct caatcatctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gcagtgcccc 5461 ccagcttccc aacccatggc atttctgcag cacaggcaac catgttacca catgtgattg 5521 tggatgtcag gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt 5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctaacaa 5701 ggccctcacc agattttgat tttattttct tggttccccc ctctgtagag agtaagttga 5761 aacagttcac cctcccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg 5821 gcatcatgca actctacacc agtccaaatg ccaatttggt tgtccagttc caaaatggca 5881 ggtgtctgct tgatggcaca ctcctcggca ccacccctgt cagagctgct gacatctgca 5941 gtttcagagg agttacctca actgaagttg atgcaactga cagccccaga gtggcagggt 6001 cccatagaat tatggtgcag ctcaaggagc cagatggaga ggagttctca cccacaggtc 6061 ctaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagcc 6121 aaagaaacac tggcggggct gggcagaact ccaacagagc ccacttcgca tacttctaca 6181 ctagaaaccc cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg 6241 actttcaaaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt taatcaattc tctctaccat attataatgg atcactcggt gcagtggatg 6361 ctgggaaact agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta 6421 gagggaatat tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc 6481 aggagtggat cacccatttt tatgcagagc aggctcccac acaaggtgac gcagccctgc 6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg 6601 gattcatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct 6661 tcagatttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaacg 6721 gccgcagggg tagaagaaga gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctc ggcagcggtt tgtcttcact tattggtgcc ggtgccaatg ccataaatca 6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga 6901 tatgctcaac tcacaagtgg aagccacaaa gcatttacaa agggagatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa 7021 cgcccctatg acacaaattt tggactggaa tggcaccaga tactgggccc caggtgcaat 7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcacaggc ctatccccaa 7141 tgttgttcac aagagtgatg gacccataca tcaaactggg tcagccacag ggtccttctc 7201 ttctctctcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtgcttc 7261 tagaacaagg gactgggtgt ctgaacagca aaggctcagc cctttcatga gaggctctct 7321 tcacactgca tatgtgactc ctccctcaag ctctgcctcc tcagtaagct ctgtatctac 7381 agtcccacat tatgttctgg attcatggac cccttctttt aacactaagc atctaccttt 7441 gtttgctcat gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat 7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcattt // LOCUS MW228040 7548 bp RNA linear VRL 12-DEC-2021 DEFINITION Norovirus GIX isolate 17027, complete genome. ACCESSION MW228040 VERSION MW228040.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7548) AUTHORS Fu,J.-G., Jiang,C.-L. and Ai,J. TITLE Direct Submission JOURNAL Submitted (08-NOV-2020) Key Laboratory of Enteric Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention, Jiangsu Road, Nanjing 210009, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7548 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="17027" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China" /collection_date="18-May-2017" /note="genotype: GIX.1[GII.P15]" gene 5..5101 /gene="ORF1" CDS 5..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QOY98731.1" /translation="MRMASSDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVRFVKETETIKGLPDLST VENEFEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTVL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGILGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6749 /gene="ORF2" CDS 5082..6749 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QOY98732.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIKMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSSRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="ORF3" CDS 6749..7480 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QOY98733.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 gtgaatgagg atggcgtcga gtgacgtcgt tactgccctt ggcagccaga aagctaccaa 61 tgacagctat agcacacccc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa 121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat 181 acaaaaaccg ccgatcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc 241 aaacggtgag gacgcagtcc gcttcgtgaa ggaaacggag accatcaagg gactaccaga 301 tttgtccacc gtggagaacg aatttgaaca ctccccgtac acagtccccc cgttgagtga 361 gagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg 421 tgaattctat cactactcca tatacgtgga caatggcaag gcccttggtg ttcacaaacc 481 accagcagca attagcctag caacgataga tttgacacct atatcgttgt actggagacc 541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa 601 gtttccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattca tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta 721 ccaatcctgg aataggaaac cccttccaac tgtggatgat ggcaagatca agaaggtcgc 781 gaatgcagtt ctgtgcgccc taggatcact tttctctaag cccattaaag acctccttgg 841 taaattgaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg 901 tgtggtggag acagttattc ttgcagcaga gctcttcaat gtcttttgga ctccacctga 961 tgtctccaac ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct 1021 tgctgtggag cttgttcctg ttatcatggg aggcattggt atggtgttgg ggttcacagc 1081 agagaagata gggcgtatgt tatcatctgc agcatccact ctcagggctt gtaaggacct 1141 tggcaattac gccttggaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga 1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctgtccttg acatggaggc 1261 aattggaaac aaccacctca caacactgct caaagacaaa gatagcttga gcgcctacat 1321 gaagacctta gacatggagg aggagaaggc taggaggctc tccactaaat catcatcacc 1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct 1441 acacaaagcc aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg 1501 aagacccggc atcgggaaga catatctggc tagacagctt gccaaatcga ttgcaaacag 1561 catgagtggt gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc 1621 ttataggggt gaaagagttg tcctatggga tgattatggc atgggaaata caatcaaaga 1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat 1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa 1801 ccccgctcca ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt 1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat 1921 gtggcgtgat cattttaaag ctgactcgtc acacataaag ttgtcactag ccccacaggg 1981 tggttttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct 2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact 2101 acagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa 2161 actagcagct gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa 2221 gaacgtaaaa actctggaag atctgaagtc tgccctcaag ggagtcaaat tcaaagagtg 2281 tgaaataatt tacaaggggg ccaagtatag agtcgcctcg gatggctgtg gcagtgtctc 2341 agtttccaag atcaaggatg ttgtgtcgca gacagccaat gaagtgcaca cagtactcct 2401 gagattgagg caagcccggg ccaggtatta catcagctgc ttccaagacc tcatatacac 2461 cctaatacag gttgctggag cctcatttgt ggtgcatagg atctcaaaga gattctcatg 2521 ggaccgctgg gtcaagccca gtgatagccc tcaggaggaa gaacaaccca gcagtgaggt 2581 ggccacaggg agatgggaaa ttgagccaaa agacacagac cctgaaggca aaaagggtaa 2641 aaataagaaa ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga 2701 agagtatgat gagttcaaaa gaatcagaga ggaaaagaac ggcaaatact ccatagaaga 2761 atacctccag gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga 2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa 2881 gcagaggaag gaggagcggg gcatcctagg gctggtcact ggttcagaaa tcaggaagag 2941 aagaccagat gactttcagc ctaaaggcaa cttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgaa aagctggagt ttgaggcccc tccaagcgtg tggtcacgta tcgtacccct 3061 cggcactggc tggggtttct gggtctcctc caacctcctc ataacaacga cacacgtcct 3121 gccaaaagga ttgaaggagc tgttcggggt tgacatcaaa caagtccaga tacacaagtc 3181 aggtgagttc tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggggcccctg aaggcacggt gtgttccatc cttgtcaaaa gaccgactgg 3301 agagatgata ccacttgcag tgaggatggg tacccacgct tccatgaaaa tccagggtag 3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt 3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt 3481 ggtagctggg gttcacactg cagctgcgcg gggtggcaac actgtgatct gtgccacgca 3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc 3601 cccaatactt ggacttggga aggcccccaa actcagtacc aagacaaagt tctggcgatc 3661 ctcccctgat gcgcttcccc caggaacgta tgaaccagca tacctaggtg gaaaggaccc 3721 aagggttgag aagggcccgt cgcttcagca ggtcatgaga gaacaactta aacctttcac 3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat 3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc 3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg 3961 gaatggtgaa tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acttaatgta 4021 tgaacaggca aaacacatga gccccgttta cactgcagcc ctcaaagatg agctggtcaa 4081 gactgataag atttacaaga agataaagaa gaggctgctg tggggttctg atctgggtac 4141 catggtcagg tgtgccaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt 4201 gatgttaccc tgcagagttg gcatgaacat gaatgaagat ggaccaatta tttttgacaa 4261 acatgcaaaa tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca 4321 aaggagcatc ttatctgctg ccatggaggt tatggtgaag ttctcagctg aaccagagct 4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgattttgt 4441 ggtgtcagtc caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat 4501 agcacattgg atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt 4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat 4621 caacttagac ccagcaaagc taaccttaaa actcagggaa tacgggttgg tccccaccag 4681 accagacaaa actgaaggcc cattagtcat cacagaggac ctccatgggt tgaccttcct 4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattagatc aggattcaat 4801 cttaaggcaa ctctattgga ctagaggacc caaccatgag aacccctacg aatgcatggt 4861 cccacactca cagcgcgcaa cccagttaat ggcgctgttg ggtgaggcat cgttgcacgg 4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gaaattaaga gtggtggtct 4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt tccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta 5221 atataattga cccctggatt aaaatgaatt ttgtacaagc cccggctggt gagttcactg 5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt ggaattagga ccagagttaa 5341 atccctatct caatcacctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc 5461 ccagcttccc aacccatggc atttctgcag cacaggctac tatgttacca catgtgattg 5521 tggatgtcag gcagctggag cctgttcggc tccctcttcc tgatgtcagg aatgtgatgt 5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggtgcg ggtgatgatg ttttcactgt ctcatgtcgt gtgctaacaa 5701 ggccctcacc agattttgat tttattttct tggtcccccc ctctgtagag agtaagctga 5761 aacagtttac ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg 5821 gtatcacaca actctacacc agtccaaata ccaatttggt tgtccagttc caaaatggca 5881 ggtgtctgct tgatggcaca cttctcggca ccacccccgt tagagctgct gacatctgca 5941 gtttcagagg agtcacctca actgaagttg acgcaactga cagttccaga gtggcagggt 6001 cgcatagaat tatggtgcag ctcaaggagc cagatggaga ggagttttca cctacaggtc 6061 ccaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc 6121 agagaaacac tggcggggct gggcagaatt ccaacagagc ccacttcgca tatttttata 6181 ctagaaaccc cacatttgca ccaggcatag ggacagttgt gttttctttt gatactactg 6241 attttcagaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt taatcaattt tccctaccat attataatgg atcactcggt gcagtggatg 6361 ctgggaagct agctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta 6421 gagggaatat tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc 6481 aggaatggat cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc 6541 tgcgttacta caaccctgac actggaagag tcctctttga gtgcaaactc caccgcgagg 6601 gatttatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct 6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg 6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctc ggcagcggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaatca 6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga 6901 tatgctcaac tcacaggtgg aagccacaaa gcacttacaa agggagatga tggccattaa 6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa 7021 cgcccctatg acacaaatct tggattggaa tggcaccaga tactgggccc cgggtgcgat 7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcataggc ctattcccaa 7141 tgttgtgcac aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc 7201 ttctctctcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtgcttc 7261 tagaacaagg gactgggtgt ctgaacagca aagactcagc cctttcatga gaggctctct 7321 tcacactgca tatgtgactc ctccctcaag ctctgcctct tcagtaagct ctgtttctac 7381 agtcccacac tatgttttag attcatggac cccttctttt aacactaaac atttaccttt 7441 gtttgcccac gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat 7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcat // LOCUS OL685293 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1136 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685293 VERSION OL685293.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1136" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63466.1" /translation="MASNDVVTAFGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63467.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63468.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccttt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctccccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcactcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OL685294 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1137 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685294 VERSION OL685294.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1137" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63469.1" /translation="MASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63470.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63471.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccctt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctccccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcactcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OL685295 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1138 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685295 VERSION OL685295.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1138" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63472.1" /translation="MASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63473.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63474.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccctt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctccccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcactcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OL685296 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1139 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685296 VERSION OL685296.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1139" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63475.1" /translation="MASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSSPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLQSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63476.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63477.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccctt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct cttcccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcaatcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OL685297 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1140 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685297 VERSION OL685297.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1140" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63478.1" /translation="MASNDVVTAFGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLQSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63479.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63480.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccttt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctccccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcaatcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OL685298 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1141 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685298 VERSION OL685298.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1141" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63481.1" /translation="MASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63482.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63483.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccctt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctccccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcactcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OL685299 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1142 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685299 VERSION OL685299.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1142" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63484.1" /translation="MASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPATLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKTKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63485.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63486.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIEEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTSSTHV PSSASSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccctt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctccccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agcgacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcactcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaacaaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacag agagagatga tggccatcga ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctgca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OL685300 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1143 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685300 VERSION OL685300.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1143" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63487.1" /translation="MASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVTVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63488.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63489.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccctt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctccccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta cggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcactcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catattcggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OL685301 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1144 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685301 VERSION OL685301.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1144" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63606.1" /translation="MASNDVVTAFGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63607.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63608.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccttt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctccccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcactcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OL685302 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1145 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685302 VERSION OL685302.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1145" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63609.1" /translation="MASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63610.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63611.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccctt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctccccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcactcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OL685303 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1146 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685303 VERSION OL685303.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1146" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63612.1" /translation="MASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGGFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTALLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLQSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63613.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63614.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTLSTHV PSSTSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccctt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctccccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cggcttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca cagcgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcaatcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaagatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgtgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acattatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OL685304 7542 bp RNA linear VRL 28-OCT-2022 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1147 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OL685304 VERSION OL685304.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Osborn,B., Pan,C.Y., Hatada,A., Hatfield,J., Wagner,J., Oakeson,K., Montmayeur,A., Morales,C. and Vinje,J. TITLE Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021 JOURNAL Emerg Infect Dis 28 (11), 2312-2315 (2022) PUBMED 36286223 REFERENCE 2 (bases 1 to 7542) AUTHORS Pan,C.-Y., Hatada,A., Wagner,J.M., Oakeson,K.F., Montmayeur,A.M., Vinje,J., Padilla,T., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (30-NOV-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1147" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: UT" /collection_date="Apr-2021" /note="genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UFP63615.1" /translation="MASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCFNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGGFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTALLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLQSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UFP63616.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UFP63617.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVAHKSDGPIHQTGSTTGSISSLSTLSTHV PSSTSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccctt ggcagccaaa aagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctccccctcc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa attcccctac 601 acggccttca gcaacaactg cttcaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aactagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cggcttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca cagcgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcattata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcaatcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaagatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgc ttccaagatc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gtagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggatttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttctatc cttgtcaaaa gaccgactgg ggagatgata 3301 ccgcttgcag tgaggatggg cacccacgct tccatgaaga tccagggtag aacggttggt 3361 ggtcaaatgg gcatgctgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggcccccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 tctttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gaccgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcccc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca cttctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cccacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc aaagaaacac 6121 tggcggggct ggacagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct accaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccctt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 ggctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgcaaactc caccgtgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagtggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaacca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgctcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acattatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtctg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaac actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattc tttctaattc ggcatttaaa aa // LOCUS OK247589 7541 bp RNA linear VRL 27-SEP-2021 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1134 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OK247589 VERSION OK247589.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7541) AUTHORS Pan,C.-Y., Hatada,A., Clow,A., VonBargen,D., Montmayeur,A.M., Chhabra,P., Vinje,J., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (22-SEP-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7541 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1134" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: CA" /collection_date="Mar-2021" /note="first 33 bases denotes primer sequence; genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UBG48260.1" /translation="MASNDVVTALGSQRATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSIIRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTISPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE TFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UBG48261.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPRFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UBG48262.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSASRTRDWVFEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccctt ggcagccaaa gagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctcccccccc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa gttcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aattagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaat 961 ttcattgctt ccataattgg agacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattat 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacaactt gccaaatcga ttgcgaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgtaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcatcata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcactcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgt ttccaagacc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gcagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggacttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggtacggt gtgttctatc cttgtcaaga gaccgactgg agagatgata 3301 ccacttgcag tgaggatggg cacccacgct tccatgaaaa tccagggtag aacggttggt 3361 ggtcaaatgg gcatgttgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggctcccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taagccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 actttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gactgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggcc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttatttgca gctgtgcccc cccgcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttgcca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcacc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca ctcctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 catggtgcag ctcaaggagc cagatggaga ggagttctca cctacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc tatatttggc acccttagtc aaagaaacac 6121 tggcggggct gggcagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccttt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 agctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagctctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgtaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagcggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaatca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgttcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtttg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaat actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattt ttctaattcg gcatttaaaa a // LOCUS OK247590 7541 bp RNA linear VRL 27-SEP-2021 DEFINITION Norovirus GIX isolate Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1135 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OK247590 VERSION OK247590.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7541) AUTHORS Pan,C.-Y., Hatada,A., Clow,A., VonBargen,D., Montmayeur,A.M., Chhabra,P., Vinje,J., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (22-SEP-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.6; Geneious v. R10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7541 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="Hu/US/2021/GIX.1[GII.P15]/CA-RGDS-1135" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="USA: CA" /collection_date="Mar-2021" /note="first 33 bases denotes primer sequence; genotype: GIX.1[GII.P15]" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UBG48263.1" /translation="MASNDVATALGSQRATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVTMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSIIRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWVKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTISPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE TFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UBG48264.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7467 /gene="ORF3" CDS 6739..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UBG48265.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTHV PSSTSSSSASRTRDWVFEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgc tactgccctt ggcagccaaa gagctaccaa tgacagctac 61 agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtgaccatg cgtgtaccct ctcccccccc aaacggtgag 241 gacgcagtcc acttcgtgaa ggaaacggag accatcaagg gactgccaga cttgtccacc 301 gtggagaacg agtctgaaca ctctccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctac 421 cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc accagcagca 481 attagcctag caacgataga tttaacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa gttcccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgactcg 661 tggttgaacc ggagatccat aattagaaca actggtttct tcaaacccta ccaatcctgg 721 aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc gaatgcagtt 781 ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg caaattaaaa 841 cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg cgtggtggaa 901 acagtcattc ttgctgcaga gctcttcaat gtcttctgga ctccacctga tgtctccaat 961 ttcattgctt ccataattgg agacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgtccctg ttatcatggg aggcattggt atggtgttag ggtttacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct tggcaattat 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaga ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctatat gaagaccttg 1321 gacatggagg aggagaaggc caggaggctc tccaccaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aaggcccggt 1501 atcgggaaga catatctggc cagacaactt gccaaatcga ttgcgaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgtaat ggggttgacc actgggatgc ctataggggt 1621 gaaagagttg tcctatggga tgactacggc atgggaaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaag 1741 gggaagatgt ttgacagcga tgtcatcata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgac 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggctttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct gcactcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact gcagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagctttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaaatc tgccctcaag ggagttaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggttgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtatcgca gacatccaac gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta tatcagctgt ttccaagacc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtacatagg atctcaaaga gattctcatg ggaccgctgg 2521 gtcaaaccca gtgacagccc tcaggaggaa gaacaaccca gcagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagat cctgaaggca aaaagggtaa aaacaagaag 2641 ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga agagaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggagga ggacttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcaaaggaag 2881 gaggagcgag gcgtcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caaccttctc ataacaacaa cacatgtcct gccaaaagga 3121 ttgaaggagc tgtttggggt tgatatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggtacggt gtgttctatc cttgtcaaga gaccgactgg agagatgata 3301 ccacttgcag tgaggatggg cacccacgct tccatgaaaa tccagggtag aacggttggt 3361 ggtcaaatgg gcatgttgct cacaggagca aacgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggactcggga aggctcccaa actcagtacc aagacaaagt tctggcggtc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaagaccc aagggttgag 3721 aagggcccgt cactccagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taagccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccccaccac ctgagaaaga atgaccattg gaatggtgaa 3961 actttcaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc cttaaagatg aactggtcaa gactgacaag 4081 atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac tatggtcagg 4141 tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt gatgttgccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ctatggaggt tatggtgaag ttctcagctg aaccggaact ggcacaagtg 4381 gtcgctgaag acttactcgc cccaagccaa ctcgacgtgg gcgactttgt ggtgtcagtc 4441 caagaaggcc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttggac 4621 ccagcaaagc taaccttaaa actcagagaa tatggattgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggat ctccatggat tgacctttct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat cttgaggcaa 4801 ctctattgga ctagaggacc caaccatgaa aatccctacg agtgcatggt cccacactca 4861 cagcgtgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gagattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcgggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa atccctatct 5341 caatcacctt gcgagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggcaac tatgttgcca catgtgattg tggatgtcag 5521 gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc cactccgtgc 5641 caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctgacaa ggccctcacc 5701 agattttgat tttattttct tggttccccc ctctgtagag agtaagttga aacagtttac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gcatcacaca 5821 actctacacc agtccaaata ccaatttggt tgttcagttc caaaatggca ggtgtctgct 5881 tgatggtaca ctcctcggca ccacccctgt cagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagccccaga gtggcagggt cccatagaat 6001 catggtgcag ctcaaggagc cagatggaga ggagttctca cctacaggtc ctaaccctgc 6061 ccctgttggc actccagact ttcaagcagc tatatttggc acccttagtc aaagaaacac 6121 tggcggggct gggcagaact ccaacagagc ccacttcgca tacttctaca ctagaaaccc 6181 cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg attttcaaaa 6241 tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt ctgaaccttt 6301 taatcaattt tctctaccat actataatgg atcactcggt gcagtggatg ctggaaaact 6361 agctccgcct gtggcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga gattgatagc ttgcttcccc aggagtggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcagctctgc tgcgttacta 6541 caaccctgac actggcagag tcctttttga gtgtaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacacttac ccccatggga aatggcaacg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagcggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaatca aaaggttgaa 6841 tatgattaca ataggcactt gcagtctgct tctttccaac atgataagga catgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agagagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaattt tggattggaa tggcaccaga tactgggccc cgggtgcaat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgttcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ctctctctcc 7201 acatcatcca cccatgttcc atcatctaca tcctcatcta gtgcttctag aacaagggac 7261 tgggtgtttg aacagcaaag actcagtcct ttcatgagag gctctcttca cactgcatat 7321 gtgactcctc cctcaagctc tgcctcctca gttagttctg tttctacagt cccacactat 7381 gttttagatt catggacccc ttcttttaat actaaacatc tacctttgtt tgctcatgtt 7441 agaaagaggg gacaatctca agtttaatct accactcatg gtttgattga tttgttttgt 7501 aattagtgaa atgttgattt ttctaattcg gcatttaaaa a // LOCUS MT010298 7263 bp RNA linear VRL 15-JUL-2020 DEFINITION Norovirus GIX isolate SCD1055_2 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MT010298 VERSION MT010298.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7263) AUTHORS Zhang,Z., Wang,D., Liu,D., Zhang,Z. and Wu,Q. TITLE Whole Genome Analysis for Co-Infected Different Genotypes of Human Norovirus JOURNAL Unpublished REFERENCE 2 (bases 1 to 7263) AUTHORS Zhang,Z., Wang,D., Liu,D., Zhang,Z. and Wu,Q. TITLE Direct Submission JOURNAL Submitted (28-JAN-2020) School of Agriculture & Biology, Shanghai Jiao Tong University, 800 Dongchuan Rd. Minhang Dist, Shanghai 200240, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC genome workbench v. 12 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7263 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="SCD1055_2" /isolation_source="anal swab" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China: Shanghai" /collection_date="18-Feb-2018" /note="genotype: GIX.1[GII.P15]" gene <1..4884 /gene="ORF1" CDS <1..4884 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QHR97557.1" /translation="MRVPSPPPNGEDAVRFVKETETIKGLPDLSTVENESEHSPYTVP PLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLTPI SLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSITR TTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLLNL LASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVPVI MGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAEME TLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRLSTKSSSPDIVG TINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLARQLAKSIANSMS GDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCDRI ENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPGQP DMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTARVMGLVCERKD EFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVKTLEDLKSALKG VKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTALLRLRQARARYYIS CFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPSSEVATGRWEIEPK DTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRDRF YEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGILGLVTGSEIRKRRPDDFQ PKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGL KELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILVKRPTGEM IPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGNDIV VAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPKLSTKTKFW RSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPKPNVLDEAK KTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQAS KANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGGLM DSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRSILSAAMEV MVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIITLS AMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKTEG PLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYECMVPHSQ RATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTW EGDRNLAPDGVNEDGVE" mat_peptide <1..789 /gene="ORF1" /product="p48" mat_peptide 790..1887 /gene="ORF1" /product="NTPase" mat_peptide 1888..2409 /gene="ORF1" /product="p22" mat_peptide 2410..2808 /gene="ORF1" /product="VPg" mat_peptide 2809..3351 /gene="ORF1" /product="Pro" mat_peptide 3352..4881 /gene="ORF1" /product="RdRp" gene 4865..6532 /gene="ORF2" CDS 4865..6532 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QHR97558.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6532..7263 /gene="ORF3" CDS 6532..7263 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QHR97559.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHHVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atgcgtgtac cctctccccc cccaaacggt gaggacgcag tccgcttcgt gaaggaaacg 61 gagaccatca agggactgcc agatttgtcc accgtggaga acgaatctga acactccccg 121 tacacagtcc ccccgttgag tgagagggag cacagaccag caacagagcc attgcccggc 181 actatacttg aaatgtggga tggtgagttc tatcactact ccatatacgt ggacaatggc 241 aaggcccttg gtgttcacaa accaccagca gcaattagcc tagcaacgat agatttgaca 301 cctatatcgt tgtactggag accggtttac acaccgccgt accttgtcca cccagagacg 361 ctcaagggac tggctggcga aaagtttccc tacacggctt tcagcaacaa ctgctacaac 421 ttctgttgct gggttctgga cctcaatgat tcatggttaa accggagatc cataactaga 481 acaactggat tcttcaaacc ctaccaatcc tggaatagga aaccccttcc aactgtggat 541 gatggcaaga tcaagaaggt tgcgaatgca gttctgtgcg ccctaggatc acttttctcc 601 aagcccatta aggacctcct tggtaaatta aaacccctca atctcctgaa cttgcttgca 661 tcatgtgatt ggacctttgc tggcgtggtg gagacagtca ttcttgcagc agagctcttc 721 aatgtctttt ggactccacc tgatgtctcc aacttcattg cttccataat tggcgacttc 781 gagatgcaag gaccagagga tcttgctgtg gagcttgtcc ctgttatcat gggaggcatt 841 ggtatggtgt tgggattcac agctgagaag atagggcgta tgttatcatc tgcagcatcc 901 actctcaggg cttgtaagga ccttggcaat tacgccttag acatcctgaa actagtcatg 961 aagtggtttt tccctaaaaa ggaggaaaag gccgagatgg aaaccctgag ggccattgag 1021 gacgctgtcc ttgacatgga ggcaattgga aacaaccatc tcacaacact gctcaaagac 1081 aaagatagct tgagcgccta catgaagacc ttagacatgg aggaggagaa ggctaggagg 1141 ctctccacta aatcatcatc acccgacatt gttggcacca tcaacgcgat cctcgcacgc 1201 attgctgccg caagatcact cctacacaaa gccaaagagg aaatgttcag tcgagcgagg 1261 cctgttgtcg ttatggtttc tggaaggccc ggcatcggga agacatatct ggctagacag 1321 cttgccaaat cgattgcaaa cagcatgagt ggcgatcaga gagtgggact cgtcccccgc 1381 aatggggttg accactggga tgcttatagg ggtgaaagag ttgtcctatg ggatgactat 1441 ggcatgggaa atacaatcaa agatgcccta accctacaag agttggctga cacctgccca 1501 gttaccctca actgtgacag gattgaaaac aaggggaaga tgtttgacag tgatgtcatc 1561 ataataacaa ccaatcttgt caaccccgct cccctcgatt atgttaattt tgaggcttgc 1621 tgtaggcgaa ttgacttcct tgtttatgcc gaggcaccgg acattgagaa agtcaaaaag 1681 gatttccctg gacaacctga catgtggcgt gatcatttca aagctgactc gtcacacata 1741 aagttatcac tagccccaca gggtggtttt gacaagaacg gaaacacccc tcacgggaag 1801 ggcaccatga aaactctcac gctacactca ctcactgcac gtgtgatggg tttagtgtgt 1861 gagaggaagg atgaattcca actgcagggt gatgaactac aggtttataa ctttgacaca 1921 aacaaggtct ctgcatttag gaaactagca gctgacaaca agtacagttt tgtggagaca 1981 atgaaagtcg gtgcagtcct caagaacgta aaaactctgg aagatctgaa atctgccctc 2041 aagggagtca aattcaaaga gtgtgaaata atctacaagg gggccaagta cagagtcgcc 2101 tcggatggtt gtggcagtgt ctcagtttcc aagatcaagg atgttgtgtc gcagacagcc 2161 aatgaagtgc acacagcgct cctgagattg aggcaagccc gggccaggta ttacatcagc 2221 tgcttccaag acctcatata caccctgata caggttgctg gagcctcatt tgtggtgcat 2281 aggatctcaa agagattctc atgggatcgc tggatcaagc ccagtgatag ccctcaggag 2341 gaagaacaac ccagcagtga ggtggccaca gggagatggg aaattgagcc aaaagacaca 2401 gaccctgaag gcaaaaaggg taaaaataag aaaggaaggg gaaggaaaca cacggctttc 2461 tctagcaagg gtcttagtga tgaagagtat gatgagttca aaagaattag agaggaaaag 2521 aacggcaaat actccataga agaatacctc caggaccgtg acagatttta cgaggaagtg 2581 gcagttgcaa gggcaacgga agaggacttc tgtgaggaag aagtggcaaa gatcagacag 2641 agaatcttca ggcccacaaa gaagcagagg aaggaggagc ggggcattct agggctggtc 2701 actggttcag aaattaggaa gagaagacca gatgactttc agcccaaagg caacttgtgg 2761 gctgacgaca ccaggagcgt ggactacaac gaaaagctgg agtttgaggc ccctccaagc 2821 gtgtggtcac gtatcgtacc cctcggcact ggctggggtt tctgggtctc ctccaacctt 2881 ctcataacaa caacacacgt cctgccaaaa ggattgaagg agctgttcgg ggttgacatc 2941 aaacaagtcc agatacataa gtcaggtgag ttctgcaggt tcaggtttcc aagaccaatc 3001 agaccagatg tcacaggcct catccttgaa gaaggggccc ctgaaggcac ggtgtgttcc 3061 atccttgtca aaagaccgac tggagagatg ataccacttg cagtgaggat gggtacccac 3121 gcctccatga aaatccaggg tagaacggtt ggtggtcaaa tgggcatgtt gcttacagga 3181 gcaaatgcca aaaatatgga tttgggcacg aaccctggtg attgtggatg cccgtacatc 3241 tttaagaggg gcaatgacat tgtggtagct ggggttcaca ctgcggctgc gcggggtggc 3301 aacactgtga tctgtgccac gcaaggagct gacggagagg ccgtccttga aggaggagag 3361 gacaaaggga cgtactgtgg tgccccaata cttggacttg ggaaggcccc caaactcagt 3421 accaagacaa aattctggcg gtcctcccct gatgcgcttc ccccgggaac gtatgagcca 3481 gcatacctag gtggaaagga cccaagggtt gagaagggcc cgtcactcca gcaggtcatg 3541 agagaacaac ttaaaccttt caccgaaccc agaggaaaac ccccaaaacc caacgttctt 3601 gatgaggcaa agaaaactgt gatgaacgtg ttggagcaga ctataaaccc tgccaaaccc 3661 tggtcatact cccaagcatg tgcttcgctt gacaagacaa cttcaagtgg tagcccgcac 3721 cacctgagaa agaatgatca ttggaatggt gaatctttta ccggtccttt ggccgatcaa 3781 gcttcaaaag caaacctaat gtatgaacag gcaaaacaca tgagccccgt ttacactgca 3841 gccctcaaag atgagctggt taagactgat aagatttaca agaaaataaa gaagaggctg 3901 ctgtggggtt ctgacctggg taccatggtc aggtgtgcca gggcttttgg tgggttgatg 3961 gatagcatga aagagagttg tgtgatgtta ccctgcagag ttggcatgaa catgaatgaa 4021 gatgggccaa tcatttttga caaacatgca aagtacaaat atcactatga tgcagattac 4081 tccagatggg actccacaca acaaaggagc atcttatctg ctgccatgga ggttatggtg 4141 aagttctcag ctgaaccaga gctggcacaa gtggtcgctg aagacttgct cgccccaagc 4201 caactcgacg tgggcgattt tgtggtgtca gtccaagaag gtctcccctc aggtgttccg 4261 tgcacttccc aatggaactc catagcacat tggatcatta cccttagtgc aatggcagaa 4321 gtttctggtc tctccccaga tgtgatccaa gctcactcat gcttctcttt ctatggtgat 4381 gatgagatag ttagcacaga catcaacttg gacccagcaa aactaacctt aaaactcagg 4441 gaatatggat tggtccccac cagaccagac aaaactgaag gcccattagt catcacagag 4501 gacctccatg ggttgacctt tctacgcaga cacatcacac gagatcctgc tgggtggttt 4561 ggaaaattag accaggattc aatcttaagg cagctctatt ggactagagg acctaaccat 4621 gagaacccct acgaatgcat ggtcccacac tcacagcgcg caacccagtt aatggcgctg 4681 ttgggtgagg catcattgca cggtccccag ttctacaaga aagtcagcaa gatggttatc 4741 aatgaaatta agagtggtgg tctggaattt tacgtgccca gacaggaggc catgttcagg 4801 tggatgagat tctctgacct cagcacgtgg gagggcgatc gcaatctggc tcccgacggt 4861 gtgaatgagg atggcgtcga gtgacgcgcc cgtttctggc accgatggtg cggcaggact 4921 cgtcccagag agtcaacaag aagtcttgcc tttagagccc gtcgcgggag ttcagctggc 4981 tgctcccgta gcagggcaaa gtaatataat tgacccctgg attagaatga attttgtgca 5041 agccccggcc ggtgagttca ctgtttcccc tcggaacgca ccgggtgagg tgcttattga 5101 tttggaatta ggaccagaat taaatcccta tctcaatcac cttgcaagaa tgtacaatgg 5161 gtatgtggga ggaatggagg tggaagttgt ccttgccggg aatgcgttca cggcgggtaa 5221 gatcttattc gcagctgtgc cccccagctt cccaacccat ggcatttctg cagcacaggc 5281 tactatgttg ccacatgtga tcgtggatgt caggcagctg gagcctgtcc ggctccctct 5341 tcctgatgtc aggaatgtga tgttccattt ctgtcaagaa aataaggagc cgcgcatgag 5401 aattgtggca atattgtaca cccctctccg tgccaacggt gcgggtgatg atgttttcac 5461 tgtctcatgt cgtgtgctaa caaggccctc accagatttt gattttattt tcttggtccc 5521 cccctctgta gagagtaagc tgaaacagtt tacccttcca aacctgcagc caaatgaaat 5581 gaccaattca agattcccca ctggtatcac acaactctac accagtccaa ataccaattt 5641 ggttgtccag ttccaaaatg gcaggtgtct gcttgatggc acacttctcg gcaccacccc 5701 tgttagagct gctgacatct gcagtttcag aggagtcact tcaactgaag ttgatgcaac 5761 tgacagtccc agagtagcag ggtcgcatag gattatggtg cagctcaagg agccagatgg 5821 agaggagttt tcacctacag gtcccaaccc tgcccctgtt ggcactccgg actttcaagc 5881 agccatattt ggcaccctta gtcaaagaaa cactggtggg gctgggcaga attccaacag 5941 agcccacttt gcatactttt acactagaaa ccccacattt gcaccaggca tagggacagt 6001 tgtgttttct tttgatacta ctgactttca gaatcgccaa cctactaaat tctctccttc 6061 tggtgtgttt gatgatgatt cttctgaacc ttttaatcaa ttttctctac catattataa 6121 tggatcactc ggtgcagtgg atgctgggaa actagctccg cctgtagcac ccaactaccc 6181 aggtgagcag attctttatt ttagagggaa cattcccttc aaaggtgggt atggagaggg 6241 tgaaattgat agcttgcttc cccaggaatg gatcacccac ttttatgcag agcaggctcc 6301 tacacaaggt gacgcagccc tgctgcgtta ctacaaccct gacactggta gagttctctt 6361 tgagtgcaaa ctccaccgcg agggattcat tacaatcaat tacacaggat ccaatgctct 6421 tgctgtacca gtcaatggag tcttcaggtt tgagggctgg gttaataaat tctacacact 6481 gacccccatg ggaaatggca acggccgcag gggtagaaga agggaattat aatggctgga 6541 gctttcttcg caggtcttgc ttctgatgtt ctcggcagcg gtttgtcttc acttatcggt 6601 gccggtgcca atgccataaa tcaaaaggtt gaatatgatt acaataggca cttgcagtca 6661 gcttctttcc aacatgataa ggatatgctc aactcacagg tggaagccac aaagcactta 6721 caaagggaga tgatggccat caaggaaggc atgctgctca agggtgggtt ctcccccact 6781 gatgcagcaa gaggagctgt caacgcccct atgacacaaa tcttggattg gaatggcacc 6841 agatattggg ccccgggtgc gatgaaaacc acggcttact caggccgttt tgttagtcaa 6901 tccactcata ggcctattcc caatgttgtg cacaagagtg atggacccat acaccaaact 6961 gggtcaacca cagggtccat ttcttctctc tccacatcat ccacccgtgt tccatcatcc 7021 acatcctcat ctagtagtgc ttctagaaca agggactggg tgtctgaaca gcaaagactc 7081 agccctttca tgagaggctc ccttcacact gcatatgtga ctcctccctc aagctctgcc 7141 tcttcagtaa gctctgtttc tacagtccca caccatgttt tagattcatg gaccccttct 7201 tttaacacta aacatttacc tttgtttgct catgttagga aaagggggca atctcaagtt 7261 taa // LOCUS MT010299 7263 bp RNA linear VRL 15-JUL-2020 DEFINITION Norovirus GIX isolate SCD1061_2 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MT010299 VERSION MT010299.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7263) AUTHORS Zhang,Z., Wang,D., Liu,D., Zhang,Z. and Wu,Q. TITLE Whole Genome Analysis for Co-Infected Different Genotypes of Human Norovirus JOURNAL Unpublished REFERENCE 2 (bases 1 to 7263) AUTHORS Zhang,Z., Wang,D., Liu,D., Zhang,Z. and Wu,Q. TITLE Direct Submission JOURNAL Submitted (28-JAN-2020) School of Agriculture & Biology, Shanghai Jiao Tong University, 800 Dongchuan Rd. Minhang Dist, Shanghai 200240, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC genome workbench v. 12 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7263 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="SCD1061_2" /isolation_source="anal swab" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China: Shanghai" /collection_date="18-Feb-2018" /note="genotype: GIX.1[GII.P15]" gene <1..4884 /gene="ORF1" CDS <1..4884 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QHR97560.1" /translation="MRVPSPPPNGEDAVRFVKETETIKGLPDLSTVENESEHSPYTVP PLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLTPI SLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSITR TTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLLNL LASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVPVI MGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAEME TLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRLSTKSSSPDIVG TINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLARQLAKSIANSMS GDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCDRI ENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPGQP DMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTARVMGLVCERKD EFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVKTLEDLKSALKG VKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTALLRLRQARARYYIS CFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPSSEVATGRWEIEPK DTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRDRF YEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGILGLVTGSEIRKRRPDDFQ PKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGL KELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILVKRPTGEM IPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIV VAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPKLSTKTKFW RSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPKPNVLDEAK KTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQAS KANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGGLM DSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRSILSAAMEV MVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIITLS AMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKTEG PLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYECMVPHSQ RATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTW EGDRNLAPDGVNEDGVE" mat_peptide <1..789 /gene="ORF1" /product="p48" mat_peptide 790..1887 /gene="ORF1" /product="NTPase" mat_peptide 1888..2409 /gene="ORF1" /product="p22" mat_peptide 2410..2808 /gene="ORF1" /product="VPg" mat_peptide 2809..3351 /gene="ORF1" /product="Pro" mat_peptide 3352..4881 /gene="ORF1" /product="RdRp" gene 4865..6532 /gene="ORF2" CDS 4865..6532 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QHR97561.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6532..7263 /gene="ORF3" CDS 6532..7263 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QHR97562.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHHVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atgcgtgtac cctctccccc cccaaacggt gaggacgcag tccgcttcgt gaaggaaacg 61 gagaccatca agggactgcc agatttgtcc accgtggaga acgaatctga acactccccg 121 tacacagtcc ccccgttgag tgagagggag cacagaccag caacagagcc attgcccggc 181 actatacttg aaatgtggga tggtgagttc tatcactact ccatatacgt ggacaatggc 241 aaggcccttg gtgttcacaa accaccagca gcaattagcc tagcaacgat agatttgaca 301 cctatatcgt tgtactggag accggtttac acaccgccgt accttgtcca cccagagacg 361 ctcaagggac tggctggcga aaagtttccc tacacggctt tcagcaacaa ctgctacaac 421 ttctgttgct gggttctgga cctcaatgat tcatggttaa accggagatc cataactaga 481 acaactggat tcttcaaacc ctaccaatcc tggaatagga aaccccttcc aactgtggat 541 gatggcaaga tcaagaaggt tgcgaatgca gttctgtgcg ccctaggatc acttttctcc 601 aagcccatta aggacctcct tggtaaatta aaacccctca atctcctgaa cttgcttgca 661 tcatgtgatt ggacctttgc tggcgtggtg gagacagtca ttcttgcagc agagctcttc 721 aatgtctttt ggactccacc tgatgtctcc aacttcattg cttccataat tggcgacttc 781 gagatgcaag gaccagagga tcttgctgtg gagcttgtcc ctgttatcat gggaggcatt 841 ggtatggtgt tgggattcac agctgagaag atagggcgta tgttatcatc tgcagcatcc 901 actctcaggg cttgtaagga ccttggcaat tacgccttag acatcctgaa actagtcatg 961 aagtggtttt tccctaaaaa ggaggaaaag gccgagatgg aaaccctgag ggccattgag 1021 gacgctgtcc ttgacatgga ggcaattgga aacaaccatc tcacaacact gctcaaagac 1081 aaagatagct tgagcgccta catgaagacc ttagacatgg aggaggagaa ggctaggagg 1141 ctctccacta aatcatcatc acccgacatt gttggcacca tcaacgcgat cctcgcacgc 1201 attgctgccg caagatcact cctacacaaa gccaaagagg aaatgttcag tcgagcgagg 1261 cctgttgtcg ttatggtttc tggaaggccc ggcatcggga agacatatct ggctagacag 1321 cttgccaaat cgattgcaaa cagcatgagt ggcgatcaga gagtgggact cgtcccccgc 1381 aatggggttg accactggga tgcttatagg ggtgaaagag ttgtcctatg ggatgactat 1441 ggcatgggaa atacaatcaa agatgcccta accctacaag agttggctga cacctgccca 1501 gttaccctca actgtgacag gattgaaaac aaggggaaga tgtttgacag tgatgtcatc 1561 ataataacaa ccaatcttgt caaccccgct cccctcgatt atgttaattt tgaggcttgc 1621 tgtaggcgaa ttgacttcct tgtttatgcc gaggcaccgg acattgagaa agtcaaaaag 1681 gatttccctg gacaacctga catgtggcgt gatcatttca aagctgactc gtcacacata 1741 aagttatcac tagccccaca gggtggtttt gacaagaacg gaaacacccc tcacgggaag 1801 ggcaccatga aaactctcac gctacactca ctcactgcac gtgtgatggg tttagtgtgt 1861 gagaggaagg atgaattcca actgcagggt gatgaactac aggtttataa ctttgacaca 1921 aacaaggtct ctgcatttag gaaactagca gctgacaaca agtacagttt tgtggagaca 1981 atgaaagtcg gtgcagtcct caagaacgta aaaactctgg aagatctgaa atctgccctc 2041 aagggagtca aattcaaaga gtgtgaaata atctacaagg gggccaagta cagagtcgcc 2101 tcggatggtt gtggcagtgt ctcagtttcc aagatcaagg atgttgtgtc gcagacagcc 2161 aatgaagtgc acacagcgct cctgagattg aggcaagccc gggccaggta ttacatcagc 2221 tgcttccaag acctcatata caccctgata caggttgctg gagcctcatt tgtggtgcat 2281 aggatctcaa agagattctc atgggatcgc tggatcaagc ccagtgatag ccctcaggag 2341 gaagaacaac ccagcagtga ggtggccaca gggagatggg aaattgagcc aaaagacaca 2401 gaccctgaag gcaaaaaggg taaaaataag aaaggaaggg gaaggaaaca cacggctttc 2461 tctagcaagg gtcttagtga tgaagagtat gatgagttca aaagaattag agaggaaaag 2521 aacggcaaat actccataga agaatacctc caggaccgtg acagatttta cgaggaagtg 2581 gcagttgcaa gggcaacgga agaggacttc tgtgaggaag aagtggcaaa gatcagacag 2641 agaatcttca ggcccacaaa gaagcagagg aaggaggagc ggggcattct agggctggtc 2701 actggttcag aaattaggaa gagaagacca gatgactttc agcccaaagg caacttgtgg 2761 gctgacgaca ccaggagcgt ggactacaac gaaaagctgg agtttgaggc ccctccaagc 2821 gtgtggtcac gtatcgtacc cctcggcact ggctggggtt tctgggtctc ctccaacctt 2881 ctcataacaa caacacacgt cctgccaaaa ggattgaagg agctgttcgg ggttgacatc 2941 aaacaagtcc agatacataa gtcaggtgag ttctgcaggt tcaggtttcc aagaccaatc 3001 agaccagatg tcacaggcct catccttgaa gaaggggccc ctgaaggcac ggtgtgttcc 3061 atccttgtca aaagaccgac tggagagatg ataccacttg cagtgaggat gggtacccac 3121 gcctccatga aaatccaggg tagaacggtt ggtggtcaaa tgggcatgtt gcttacagga 3181 gccaacgcta agaacatgga tttgggtacc ggccccgggg attgtggttg cccgtatata 3241 tacaagaggg gcaatgacat cgtggtggct ggggtccaca ctgcggctgc gcggggtggc 3301 aacactgtga tctgtgccac gcaaggagct gacggagagg ccgtccttga aggaggagag 3361 gacaaaggga cgtactgtgg tgccccaata cttggacttg ggaaggcccc caaactcagt 3421 accaagacaa aattctggcg gtcctcccct gatgcgcttc ccccgggaac gtatgagcca 3481 gcatacctag gtggaaagga cccaagggtt gagaagggcc cgtcactcca gcaggtcatg 3541 agagaacaac ttaaaccttt caccgaaccc agaggaaaac ccccaaaacc caacgttctt 3601 gatgaggcaa agaaaactgt gatgaacgtg ttggagcaga ctataaaccc tgccaaaccc 3661 tggtcatact cccaagcatg tgcttcgctt gacaagacaa cttcaagtgg tagcccgcac 3721 cacctgagaa agaatgatca ttggaatggt gaatctttta ccggtccttt ggccgatcaa 3781 gcttcaaaag caaacctaat gtatgaacag gcaaaacaca tgagccccgt ttacactgca 3841 gccctcaaag atgagctggt taagactgat aagatttaca agaaaataaa gaagaggctg 3901 ctgtggggtt ctgacctggg taccatggtc aggtgtgcca gggcttttgg tgggttgatg 3961 gatagcatga aagagagttg tgtgatgtta ccctgcagag ttggcatgaa catgaatgaa 4021 gatgggccaa tcatttttga caaacatgca aagtacaaat atcactatga tgcagattac 4081 tccagatggg actccacaca acaaaggagc atcttatctg ctgccatgga ggttatggtg 4141 aagttctcag ctgaaccaga gctggcacaa gtggtcgctg aagacttgct cgccccaagc 4201 caactcgacg tgggcgattt tgtggtgtca gtccaagaag gtctcccctc aggtgttccg 4261 tgcacttccc aatggaactc catagcacat tggatcatta cccttagtgc aatggcagaa 4321 gtttctggtc tctccccaga tgtgatccaa gctcactcat gcttctcttt ctatggtgat 4381 gatgagatag ttagcacaga catcaacttg gacccagcaa aactaacctt aaaactcagg 4441 gaatatggat tggtccccac cagaccagac aaaactgaag gcccattagt catcacagag 4501 gacctccatg ggttgacctt tctacgcaga cacatcacac gagatcctgc tgggtggttt 4561 ggaaaattag accaggattc aatcttaagg cagctctatt ggactagagg acctaaccat 4621 gagaacccct acgaatgcat ggtcccacac tcacagcgcg caacccagtt aatggcgctg 4681 ttgggtgagg catcattgca cggtccccag ttctacaaga aagtcagcaa gatggttatc 4741 aatgaaatta agagtggtgg tctggaattt tacgtgccca gacaggaggc catgttcagg 4801 tggatgagat tctctgacct cagcacgtgg gagggcgatc gcaatctggc tcccgacggt 4861 gtgaatgagg atggcgtcga gtgacgcgcc cgtttctggc accgatggtg cggcaggact 4921 cgtcccagag agtcaacaag aagtcttgcc tttagagccc gtcgcgggag ttcagctggc 4981 tgctcccgta gcagggcaaa gtaatataat tgacccctgg attagaatga attttgtgca 5041 agccccggcc ggtgagttca ctgtttcccc tcggaacgca ccgggtgagg tgcttattga 5101 tttggaatta ggaccagaat taaatcccta tctcaatcac cttgcaagaa tgtacaatgg 5161 gtatgtggga ggaatggagg tggaagttgt ccttgccggg aatgcgttca cggcgggtaa 5221 gatcttattc gcagctgtgc cccccagctt cccaacccat ggcatttctg cagcacaggc 5281 tactatgttg ccacatgtga tcgtggatgt caggcagctg gagcctgtcc ggctccctct 5341 tcctgatgtc aggaatgtga tgttccattt ctgtcaagaa aataaggagc cgcgcatgag 5401 aattgtggca atattgtaca cccctctccg tgccaacggt gcgggtgatg atgttttcac 5461 tgtctcatgt cgtgtgctaa caaggccctc accagatttt gattttattt tcttggtccc 5521 cccctctgta gagagtaagc tgaaacagtt tacccttcca aacctgcagc caaatgaaat 5581 gaccaattca agattcccca ctggtatcac acaactctac accagtccaa ataccaattt 5641 ggttgtccag ttccaaaatg gcaggtgtct gcttgatggc acacttctcg gcaccacccc 5701 tgttagagct gctgacatct gcagtttcag aggagtcact tcaactgaag ttgatgcaac 5761 tgacagtccc agagtagcag ggtcgcatag gattatggtg cagctcaagg agccagatgg 5821 agaggagttt tcacctacag gtcccaaccc tgcccctgtt ggcactccgg actttcaagc 5881 agccatattt ggcaccctta gtcaaagaaa cactggtggg gctgggcaga attccaacag 5941 agcccacttt gcatactttt acactagaaa ccccacattt gcaccaggca tagggacagt 6001 tgtgttttct tttgatacta ctgattttca gaatcgccaa cctactaaat tctctccttc 6061 tggtgtgttt gatgatgatt cttctgaacc ttttaatcaa ttttctctac catattataa 6121 tggatcactc ggtgcagtgg atgctgggaa actagctccg cctgtagcac ccaactaccc 6181 aggtgagcag attctttatt ttagagggaa cattcccttc aaaggtgggt atggagaggg 6241 tgaaattgat agcttgcttc cccaggaatg gatcacccac ttttatgcag agcaggctcc 6301 tacacaaggt gacgcagccc tgctgcgtta ctacaaccct gacactggta gagttctctt 6361 tgagtgcaaa ctccaccgcg agggattcat tacaatcaat tacacaggat ccaatgctct 6421 tgctgtacca gtcaatggag tcttcaggtt tgagggctgg gttaataaat tctacacact 6481 gacccccatg ggaaatggca acggccgcag gggtagaaga agggaattat aatggctgga 6541 gctttcttcg caggtcttgc ttctgatgtt ctcggcagcg gtttgtcttc acttatcggt 6601 gccggtgcca atgccataaa tcaaaaggtt gaatatgatt acaataggca cttgcagtca 6661 gcttctttcc aacatgataa ggatatgctc aactcacagg tggaagccac aaagcactta 6721 caaagggaga tgatggccat caaggaaggc atgctgctca agggtgggtt ctcccccact 6781 gatgcagcaa gaggagctgt caacgcccct atgacacaaa tcttggattg gaatggcacc 6841 agatattggg ccccgggtgc gatgaaaacc acggcttact caggccgttt tgttagtcaa 6901 tccactcata ggcctattcc caatgttgtg cacaagagtg atggacccat acaccaaact 6961 gggtcaacca cagggtccat ttcttctctc tccacatcat ccacccgtgt tccatcatcc 7021 acatcctcat ctagtagtgc ttctagaaca agggactggg tgtctgaaca gcaaagactc 7081 agccctttca tgagaggctc tcttcacact gcatatgtga ctcctccctc aagctctgcc 7141 tcttcagtaa gctctgtttc tacagtccca caccatgttt tagattcatg gaccccttct 7201 tttaacacta aacatttacc tttgtttgct catgttagga aaagggggca atctcaagtt 7261 taa // LOCUS MT707683 7594 bp RNA linear VRL 18-NOV-2020 DEFINITION Norovirus GII isolate KMN1 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MT707683 MT645709 VERSION MT707683.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7594) AUTHORS Chen,Y., Wu,Q., Yang,Z., Fang,Q., Hou,D., Zheng,H., Guo,L., Li,H. and Liu,L. TITLE Direct Submission JOURNAL Submitted (20-JUN-2020) Respiratory virus Laboratory, Chinese Academy of Medical Science, alternating current road 935, Kunming, Yunnan 650221, China COMMENT On Nov 18, 2020 this sequence version replaced MT645709.1. ##Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.0 or MAY-2020 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7594 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="KMN1" /isolation_source="vomitus" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="20-Oct-2017" /note="genotype: GII" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QLD28946.1" /translation="MASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKKIL GAVPKAPKQHGSIQKPPIVEIDGVAMRVPSPPPNGEDAVRFVKETETIKGLPDLSTVE NESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAA ISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLN DSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLL GKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGP EDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARRL STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYLAR QLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELAD TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDI EKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTA RVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVK TLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTALLR LRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPSSE VATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYS IEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGILGLVTGS EIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLL ITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVC SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGC PYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGK APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGK PPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGE SFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM VRCARAFGGLMDSMKESCVVLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQ QRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQW NSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYG LVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHE NPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF RWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide <1..996 /gene="ORF1" /product="p48" mat_peptide 997..2094 /gene="ORF1" /product="NTPase" mat_peptide 2095..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6739 /gene="ORF2" CDS 5072..6739 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QLD28947.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSSRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6739..7470 /gene="ORF3" CDS 6739..7470 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QLD28948.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV PSSISSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 atggcgtcga atgacgtcgt tactgccctt ggcagccaga aagctaccaa tgacagctat 61 agcacacccc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa agttggcttt 121 aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcat acaaaaaccg 181 ccgatcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc aaacggtgag 241 gacgcagtcc gcttcgtgaa ggaaacggag accatcaagg gactaccaga tttgtccacc 301 gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga gagggagcac 361 aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg tgagttctat 421 cactactcca tatacgtgga caatggcaag gcccttggtg ttcacaaacc accagcagca 481 attagcctag caacgataga tttgacacct atatcgttgt actggagacc ggtttacaca 541 ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa gtttccctac 601 acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct caatgattca 661 tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta ccaatcctgg 721 aataggaaac cccttccaac tgtggatgat ggcaagatca agaaggtcgc aaatgcagtt 781 ctgtgcgccc taggatcact tttctccaag cccattaaag acctccttgg taaattgaaa 841 ccactcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg tgtggtggag 901 acagttattc ttgcagcaga gctcttcaat gtcttttgga ctccacctga tgtctccaac 961 ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct tgctgtggag 1021 cttgttcctg ttatcatggg aggcattggt atggtgttgg gattcacagc tgagaagata 1081 gggcgtatgt tatcatctgc agcatccact ctcagggctt gtaaggacct tggcaattac 1141 gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga ggaaaaggcc 1201 gagatggaaa ccctgagggc cattgaggac gctgtccttg acatggaggc aattggaaac 1261 aaccacctca caacactgct caaagacaaa gatagcttga gtgcctacat gaagacctta 1321 gacatggagg aggagaaggc taggaggctc tccactaaat catcatcacc cgacattgtt 1381 ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct acacaaagcc 1441 aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg aagacccggc 1501 atcgggaaga catatctggc tagacagctt gccaaatcga ttgcaaacag catgagtggt 1561 gatcagagag tgggactcgt cccccgcaat ggggttgacc actgggatgc ttataggggt 1621 gaaagagttg tcctatggga tgactatggc atggggaata caatcaaaga tgccctgacc 1681 ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat cgaaaacaaa 1741 gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa ccccgctccc 1801 ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt ttatgccgag 1861 gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat gtggcgtgat 1921 cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg tggttttgac 1981 aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct acactcactc 2041 actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact acagggtgat 2101 gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa actagcagct 2161 gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa gaatgtaaaa 2221 accctggaag atctgaagtc tgctctcaag ggagtcaaat tcaaagagtg tgaaataatt 2281 tacaaggggg ccaagtatag agtcgcctcg gatggctgtg gcagtgtctc agtttccaag 2341 atcaaggatg ttgtgtcgca gacagccaat gaagtgcaca cagcgctcct gagattgagg 2401 caagcccggg ccaggtatta catcagctgc ttccaagacc tcatatacac cctaatacag 2461 gttgctggag cctcatttgt ggtgcatagg atctcaaaga gattctcatg ggaccgctgg 2521 atcaagccca gtgatagccc tcaggaggaa gaacaaccca gcagtgaggt ggccacaggg 2581 agatgggaaa ttgagccaaa agacacagac cctgaaggca aaaagggtaa aaataagaaa 2641 ggaaggggaa ggaaacacac agctttctct agtaagggtc ttagtgatga agagtatgat 2701 gagttcaaaa gaatcagaga ggaaaagaac ggcaaatact ccatagaaga atacctccag 2761 gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga ggacttctgt 2821 gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa gcagaggaag 2881 gaggagcggg gcatcctagg gctggtcact ggttcagaaa tcaggaagag aagaccagat 2941 gactttcagc ctaaaggcaa cttgtgggct gatgacacca ggagcgtgga ctacaacgaa 3001 aagctggagt ttgaggcccc tccaagcgtg tggtcacgta tcgtacccct cggcactggc 3061 tggggtttct gggtctcctc caacctcctc ataacaacaa cacacgtcct gccaaaagga 3121 ttgaaggagc tgttcggggt tgacatcaaa caagtccaga tacacaagtc aggtgagttc 3181 tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat ccttgaagaa 3241 ggggcccctg aaggcacggt gtgttccatc cttgtcaaaa gaccgactgg agagatgata 3301 ccacttgcag tgaggatggg tacccacgct tccatgaaaa tccagggtag aacggttggt 3361 ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt gggcacgaac 3421 cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt ggtagctggg 3481 gttcacactg cagctgcgcg gggtggcaac actgtgatct gtgccacgca aggagctgac 3541 ggagaggccg tcctcgaagg aggagaggac aaagggacgt actgtggtgc cccaatactt 3601 ggacttggga aggcccccaa actcagtacc aagacaaagt tctggcgatc ctcccctgat 3661 gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaggaccc aagggttgag 3721 aagggcccgt cgcttcagca ggtcatgaga gaacaactta aacctttcac cgaacccaga 3781 ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat gaacgtgttg 3841 gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc ttcgcttgac 3901 aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg gaatggtgaa 3961 tctttcaccg gccctttggc cgaccaagct tcaaaagcaa acctaatgta tgaacaggca 4021 aaacacatga gccccgttta cactgcagcc ctcaaagatg agctggtcaa gactgataag 4081 atttacaaga aaataaagaa gaggctgctg tggggttctg atctgggtac catggtcagg 4141 tgtgccaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt ggtgttaccc 4201 tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgacaa acatgcaaaa 4261 tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca aaggagcatc 4321 ttatctgctg ccatggaggt tatggtgaag ttctcagctg aaccagagct ggcacaagtg 4381 gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgattttgt ggtgtcagtc 4441 caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat agcacattgg 4501 atcattaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt gatccaagct 4561 cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat caacttagac 4621 ccagcaaagc taaccttaaa actcagggaa tacgggttgg tccccaccag accagacaaa 4681 actgaaggcc cattagtcat cacagaggac ctccatgggt tgaccttcct acgcagacac 4741 atcacacgag atcctgctgg atggtttgga aaattagatc aggattcaat cttaaggcaa 4801 ctctactgga ctagaggacc caaccatgag aacccctacg aatgcatggt cccacactca 4861 cagcgcgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg tccccagttc 4921 tacaagaaag tcagcaagat ggttatcaat gaaattaaga gtggtggtct ggaattttac 4981 gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag cacgtgggag 5041 ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg acgcgcccgt 5101 ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag tcttgccttt 5161 agagcccgtc gcaggagttc agctggctgc tcccgtagca gggcaaagta atataattga 5221 cccctggatt agaatgaatt ttgtacaagc cccggccggt gagttcactg tttcccctcg 5281 gaacgcaccg ggtgaggtgc ttattgattt ggaattagga ccagagttaa atccctatct 5341 caatcacctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg aagttgtcct 5401 tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc ccagcttccc 5461 aacccatggc atttctgcag cacaggctac tatgttacca catgtgattg tggatgtcag 5521 gcagctggag cctgttcggc tccctcttcc tgatgtcagg aatgtgatgt tccatttctg 5581 tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc ctctccgtgc 5641 caacggtgcg ggtgatgatg ttttcactgt ctcatgtcgt gtgctaacaa ggccctcacc 5701 agattttgat tttattttct tagtcccccc ctctgtagag agtaagctga aacagttcac 5761 ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg gtatcacaca 5821 actctacacc agtccaaata ccaatttggt tgtccagttc caaaatggca ggtgtctgct 5881 tgatggcaca cttctcggca ccacccctgt tagagctgct gacatctgca gtttcagagg 5941 agtcacctca actgaagttg atgcaactga cagttccaga gtggcagggt cgcatagaat 6001 tatggtgcag ctcaaggagc cagatggaga ggagttttca cctacaggtc ccaaccctgc 6061 ccctgttggc actccagact ttcaagcagc catatttggc accctcagtc aaagaaacac 6121 tggcggggct gggcagaatt ccaacagagc ccacttcgca tatttttaca ctagaaaccc 6181 cacatttgca ccaggcatag ggacagttgt gttttctttt gatactactg attttcagaa 6241 tcgccaacct actaaattct ccccttctgg tgtgtttgat gatgattctt ctgaaccttt 6301 taatcaattt tctctaccat attataatgg atcactcggt gcagtggatg ctgggaagct 6361 agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta gagggaatat 6421 tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc aggaatggat 6481 cacccacttt tatgcagagc aggctcctac acaaggtgac gcggccctgc tgcgttacta 6541 caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg gattcatcac 6601 aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct tcaggtttga 6661 gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg gccgcagggg 6721 tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc tgatgttctc 6781 ggcagcggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaatca aaaggttgaa 6841 tatgattaca ataggcactt gcagtcagct tcttttcaac atgataagga tatgctcaac 6901 tcacaggtgg aagccacaaa gcacttacaa agggagatga tggccatcaa ggaaggcatg 6961 ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa cgcccctatg 7021 acacaaatct tggattggaa tggcaccaga tactgggccc cgggtgcgat gaaaaccacg 7081 gcttactcag gccgttttgt tagccaatcc actcacaggc ctattcccaa tgttgtgcac 7141 aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc ttctctctcc 7201 acatcatcca cccgtgttcc atcatccata tcctcatcta gtagtgcttc tagaacaagg 7261 gactgggtgt ctgaacagca aagactcagc ccttttatga gaggctctct tcacactgca 7321 tatgtgactc ctccctcaag ctctgcctct tcagtaagtt ctgtttctac agtcccacac 7381 tatgttttag attcatggac cccttctttt aacactaaac atttgccttt gtttgctcat 7441 gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat tgatttgttt 7501 tgtaattagt gaaatgttga ttctttctaa ttcggcattt aaaaaaaaaa aaaaaaaaaa 7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa // LOCUS MT703831 7547 bp RNA linear VRL 08-JUL-2020 DEFINITION Norovirus GIX isolate SD20191568 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION MT703831 VERSION MT703831.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7547) AUTHORS Fu,Z., Liu,L., Kong,X., Han,Y., Jin,M., Pang,L., Zhang,Q. and Duan,Z. TITLE The complete genomic sequence analysis of the Shandong Norovirus strain SD20191568 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7547) AUTHORS Fu,Z., Liu,L., Kong,X., Han,Y., Jin,M., Pang,L., Zhang,Q. and Duan,Z. TITLE Direct Submission JOURNAL Submitted (02-JUL-2020) Institute of Pathogenic Microorganisms, Shandong Center for Disease Control and Prevention, No. 16992, Jingshi Road, Jinan 250014, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7547 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="SD20191568" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China: Jinan" /collection_date="07-Jun-2019" /note="genotype: GIX.1" gene 4..5100 /gene="ORF1" CDS 4..5100 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QLC45976.1" /translation="MKMASNDVVTALGSQKATNDSYSTSPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSTQKPPVVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHRPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLFASCDWTFSGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPAVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSAKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 4..1005 /gene="ORF1" /product="p48" mat_peptide 1006..2103 /gene="ORF1" /product="NTPase" mat_peptide 2104..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3024 /gene="ORF1" /product="VPg" mat_peptide 3025..3567 /gene="ORF1" /product="Pro" mat_peptide 3568..5097 /gene="ORF1" /product="RdRp" gene 5081..6748 /gene="ORF2" CDS 5081..6748 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QLC45977.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6748..7479 /gene="ORF3" CDS 6748..7479 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QLC45978.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPVHQTGSATGSISSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSASTVPHHVLD SWTPSFNTKHLPLFAHVGKRGQSQV" ORIGIN 1 tgaatgaaga tggcgtcgaa tgacgtcgtt actgcccttg gcagccagaa agctaccaat 61 gacagctata gcacatctcc ccccaacaag gaggaggcta gtgtgcttgc caacgttaaa 121 gttggcttta aaaagatcct cggggccgtc cctaaggctc cgaaacagca tggcagcaca 181 caaaaaccgc cggtcgtcga gatcgatggt gtggccatgc gtgtaccctc tcccccccca 241 aacggtgagg atgcagtcca cttcgtaaag gaaacggaga ccatcaaggg actgccagat 301 ttgtccaccg tggagaacga atctgaacac tccccgtaca cagtcccccc gttgagtgag 361 agggagcaca ggccagcaac agagccattg cccggcacta tacttgagat gtgggatggt 421 gagttctacc actactccat atacgtggac aatggcaagg cccttggagt tcacagacca 481 ccagcagcaa ttagcctagc aacgatagat ttaacaccta tatcgttgta ctggagaccg 541 gtttacacac cgccgtacct tgtccaccca gagacgctca agggactggc tggcgaaaag 601 ttcccctaca cggccttcag caacaactgc tacaacttct gttgctgggt tctggacctt 661 aatgactcgt ggttgaaccg gagatccata actagaacaa ctggattctt caaaccctac 721 caatcctgga acaggaagcc ccttccaact gtggatgatg gcaagatcaa gaaggtcgcg 781 aatgcagttc tgtgtgccct aggatcactt ttctccaagc ccattaagga cctccttggc 841 aaattaaaac ccctcaatct cctgaacttg tttgcatcat gtgactggac cttttctggc 901 gtggtggaaa cagtcatcct tgctgcagag ctcttcaatg tcttttggac tccacctgat 961 gtctccaact tcattgcttc cataattggc gacttcgaga tgcaaggacc agaggatctt 1021 gctgtggagc ttgtccctgt tatcatggga ggcattggta tggtgttagg gtttacagct 1081 gagaagatag ggcgtatgtt atcatctgca gcatccaccc tcagggcttg taaggacctt 1141 ggcaattacg ccttagacat cctgaaacta gtcatgaagt ggtttttccc taaaaaggag 1201 gaaaaggccg agatggaaac cctgagggcc atcgaggacg ctgtccttga catggaggca 1261 attggaaaca accacctcac aacgctgctc aaagacaaag atagcttgag cgcctacatg 1321 aagaccttgg acatggagga ggagaaggcc aggaggctct ccactaaatc atcatcacct 1381 gacattgttg gcaccatcaa cgcgatcctc gcacgcattg ctgccgcaag gtcactccta 1441 cacaaagcca aagaggaaat gttcagtcga gcgaggcctg ctgtcgttat ggtgtctgga 1501 agacccggca tcgggaagac atatctagct agacagcttg ccaaatcgat tgcgaacagc 1561 atgagtggtg atcagagagt gggactcgtt ccccgcaatg gggtcgacca ctgggatgcc 1621 tataggggtg aaagagttgt cctatgggat gactacggca tgggaaatac tatcaaagat 1681 gccctgaccc tacaagagtt ggctgacacc tgcccagtta ccctcaactg tgacaggatc 1741 gaaaacaagg ggaagatgtt tgacagcgat gtcatcataa taacaaccaa tcttgtcaac 1801 cccgctcccc tcgattatgt taattttgag gcttgctgta ggcgaattga cttccttgtt 1861 tatgccgagg caccggacat tgagaaagtc aaaaaggatt tccctggaca acctgacatg 1921 tggcgtgacc attttaaagc tgactcgtca cacataaagt tatcactagc cccacagggt 1981 ggttttgaca agaacggaaa caccccccac gggaagggca ccatgaaaac tctcacgcta 2041 cactcactca ctgcacgtgt gatgggttta gtgtgtgaga ggaaggatga gttccaactg 2101 cagggtgatg aactacaggt ttataacttt gacacaaaca aggtctctgc atttagaaaa 2161 ctagcagctg acaacaagta cagctttgtg gagacaatga aagtcggtgc agtcctcaag 2221 aacgtgaaaa ccctggaaga tctgaaatct gccctaaagg gagttaaatt caaagagtgt 2281 gaaataattt acaagggggc caagtataga gtcgcctcgg atggctgtgg cagtgtctca 2341 gtttccaaga tcaaggatgt tgtgtcgcag acatccaatg aagtgcacac agcgctcctg 2401 agattgaggc aagcccgggc caggtattac atcagctgct tccaagacct catatacacc 2461 ctaatacagg ttgctggagc ctcatttgtg gtacatagga tctcaaagag attttcatgg 2521 gaccgctgga tcaaacccag tgacagccct caggaggaag aacaacccag cagtgaggtg 2581 gccacaggga gatgggaaat tgagccaaaa gacacagacc ctgaaggtaa aaagggtaaa 2641 aacaagaagg gaaggggaag gaaacacacg gccttctcta gtaagggtct tagtgatgaa 2701 gagtatgatg agttcaaaag aatcagagag gagaagaacg gcaaatactc catagaagaa 2761 tacctccagg accgtgacag attttatgag gaagtggcag ttgcaagggc aacggaagag 2821 gacttctgtg aggaagaagt ggcaaagatc agacagagaa tcttcaggcc cacaaagaag 2881 cagaggaagg aggagcgtgg cgtcctaggg ctggtcactg gttcagaaat caggaagaga 2941 agaccagatg acttccagcc taaaggtaac ttgtgggctg atgacaccag gagcgtggac 3001 tacaacgaaa agctggagtt tgaggcccct ccgagcgtgt ggtcacgtat cgtacccctc 3061 ggcactggct ggggtttctg ggtctcctcc aaccttctca taacaacaac acacgtcctg 3121 ccaaaaggat tgaaggagct gttcggggtt gatatcaaac aagtccagat acacaagtca 3181 ggtgagttct gcaggttcag gtttccaaga ccaatcagac cagatgtcac aggcctcatc 3241 cttgaagaag gggcccctga aggtacggtg tgttctatcc ttgtcaaaag accgactgga 3301 gagatgattc cacttgcagt gaggatgggc acccacgctt ctatgaaaat ccagggtaga 3361 acggttggtg gtcaaatggg catgttgctc acaggagcaa atgccaaaaa catggatttg 3421 ggcacgaacc ctggtgattg tggatgcccg tacattttta agaggggcaa tgacattgtg 3481 gtagctgggg tccacactgc agctgcacgg ggtggcaaca ctgtgatctg tgccacgcaa 3541 ggagctgacg gagaggccgt ccttgaagga ggagaggaca aagggacgta ctgtggtgcc 3601 ccaatacttg gactcgggaa ggctcccaaa ctcagtgcca agacaaagtt ctggcgatcc 3661 tcccctgatg cgcttccccc gggaacgtat gagccagcat atctaggtgg aaaggaccca 3721 agggttgaga agggcccgtc actccagcag gtcatgagag aacagcttaa accttttacc 3781 gaaccaagag gaaaaccccc aaaacccaac gttcttgatg aggcaaagaa aactgtgatg 3841 aacgtgttgg agcagactat aaaccctgcc aaaccctggt catattccca agcatgtgct 3901 tcgcttgaca agacaacttc aagtggtagc ccgcaccacc tgagaaagaa tgatcattgg 3961 aatggtgaat cttttaccgg tcctttggcc gatcaagctt caaaagcaaa cctaatgtat 4021 gaacaggcaa aacacatgag tcccgtttac actgcggccc tcaaagatga actggtcaag 4081 actgataaga tctacaagaa aataaagaag aggctgctgt ggggctctga cctgggtacc 4141 atggtcaggt gtgctagggc ttttggtggg ttgatggata gcatgaaaga gagttgtgtg 4201 atgttaccct gcagagttgg catgaacatg aatgaagatg gaccaatcat ttttgacaaa 4261 catgcaaagt acaaatatca ctatgatgca gattactcca gatgggattc cacacaacaa 4321 aggagcatct tatctgctgc catggaggtt atggtgaagt tctcagctga accggaactg 4381 gcacaagtgg tcgctgaaga cttgctcgcc ccaagccaac tcgacgtggg cgactttgtg 4441 gtgtcagttc aagaaggtct tccctcaggt gttccgtgca cttcccaatg gaactccata 4501 gcacattgga tcatcaccct tagtgcaatg gcagaagttt ctggtctctc cccagatgtg 4561 atccaagctc actcatgctt ctctttctat ggtgatgatg agatagttag cacagacatc 4621 aacttggacc cagcaaagtt aaccttaaaa ctcagggaat atggattggt ccccaccaga 4681 ccagacaaaa ctgaaggccc attagtcatc acagaggatc tccatggact gaccttccta 4741 cgcagacaca tcacacgaga tcctgctgga tggtttggaa aattagacca ggattcaatc 4801 ttaaggcaac tctattggac tagagggccc aaccatgaaa acccctatga gtgcatggtc 4861 ccacactcac agcgcgcaac tcagttaatg gcgctgttgg gtgaggcatc attgcacggt 4921 ccccagttct acaagaaagt cagcaagatg gttatcaatg agattaagag tggtggtctg 4981 gaattttacg tgcccagaca agaggccatg ttcagatgga tgagattctc tgacctcagc 5041 acgtgggagg gcgatcgcaa tctggctccc gacggtgtga atgaggatgg cgtcgagtga 5101 cgcgcccgtt tctggcaccg atggtgcggc aggactcgtc ccagagagtc aacaagaagt 5161 cttgccttta gagcccgtcg cgggagttca gctggctgct cccgtagcag ggcaaagtaa 5221 tataattgac ccctggatta gaatgaactt tgtgcaagcc ccggccggtg agttcactgt 5281 ttcccctcgg aacgcaccgg gtgaggtgct tattgattta gaattaggac cagaattaaa 5341 tccctatctc aatcaccttg caagaatgta caatgggtat gtgggaggaa tggaggtgga 5401 agttgtcctt gccgggaatg cgttcacggc gggtaagatc ttattcgcag ctgtgccccc 5461 cagcttccca acccatggca tttctgcagc acaggcaacc atgttaccac atgtgattgt 5521 ggatgtcagg cagctggagc ctgtccggct ccctcttcct gatgtcagga atgtgatgtt 5581 ccatttctgt caagaaaata aggagccgcg catgagaatt gtggcaatat tgtacacccc 5641 tctccgtgcc aacggtgcgg gtgatgatgt cttcactgtc tcatgtcgtg tgctaacaag 5701 gccctcacca gattttgatt ttattttctt ggtcccccct tctgtagaga gtaagttgaa 5761 gcagtttacc cttccaaacc tgcagccaaa tgaaatgacc aattcaagat tccccactgg 5821 catcacacaa ctctacacca gtccaaatac caatttggtt gtccagttcc aaaatggcag 5881 gtgtctgctt gatggcacac tcctcggcac cacccctgtc agagctgctg acatctgcag 5941 tttcagagga gtcacctcaa ctgaagttga tgcaactgac agccccagag tggcagggtc 6001 ccatagaatt atggtgcagc tcaaggagcc agatggagag gagttttcac ccacaggtcc 6061 taaccctgcc cctgttggca ctccagactt tcaagcagcc atatttggca cccttagtca 6121 aagaaacact ggcggggctg ggcagaactc caacagagcc cacttcgcat acttctacac 6181 tagaaacccc acatttgcac caggtatagg gacagttgtg ttttcttttg atactactga 6241 tttccaaaat cgccaaccca ctaaattctc tccttctggt gtgtttgatg atgattcttc 6301 tgaacctttt aatcaatttt ctctaccata ttataatgga tcactcggtg cagtggatgc 6361 tgggaaacta gctccgcctg tagcacccaa ttatccaggt gagcagattc tctattttag 6421 agggaatatt cccttcaaag gtgggtatgg agagggtgaa attgatagct tgcttcccca 6481 ggagtggatc acccactttt atgcagagca ggctcctaca caaggtgacg cagccctgct 6541 gcgttactac aaccctgaca ctggcagagt cctctttgag tgcaaactcc accgcgaggg 6601 attcatcaca atcaattaca cagggtccaa tgctcttgct gtaccagtca atggagtctt 6661 caggtttgag ggctgggtta acaaattcta cacactgacc cccatgggaa atggcaacgg 6721 ccgcaggggt agaagaaggg agttataatg gctggagctt tctttgcagg tcttgcttct 6781 gatgttctcg gcagcggttt gtcttcactt atcggtgccg gtgccaatgc cataaatcaa 6841 aaggttgaat atgattacaa taggcatttg caatcagctt ctttccaaca tgataaggat 6901 atgctcaact cacaagtgga agccacaaag cacttacaaa gggagatgat ggccatcaag 6961 gaaggcatgc tgctcaaggg tgggttctcc cccactgatg cagcaagagg agctgtcaac 7021 gcccctatga cacaaatttt ggattggaat ggcaccagat actgggcccc aggtgcaatg 7081 aaaaccacgg cttactcagg ccgttttgtc agccaatcca ctcacaggcc cattcccaat 7141 gttgttcaca agagtgatgg acccgtacac caaactgggt cagccacagg gtccatttct 7201 tctctctcca catcatccac ccgtgttcca tcatccacat cctcatctag tagtgcttct 7261 agaacaaggg actgggtgtc tgaacagcaa aggctcagcc ctttcatgag aggctctctt 7321 cacactgcat atgtgactcc tccctcaagc tctgcctcct cagtaagctc tgcttctaca 7381 gtcccacatc atgttttaga ttcatggacc ccttctttta acactaaaca tctacctttg 7441 tttgctcatg ttgggaaaag gggacaatct caagtttaat ctaccactca tggtttgatt 7501 gatttgtttt gtaattagtg aaatgttgat tctttctaat tcgacat // LOCUS LC048991 7551 bp RNA linear VRL 07-JAN-2023 DEFINITION Norovirus Hu/GIX/3-250/Tokyo/1995/JPN non structural protein VP1, VP2 genes for polyprotein, capsid protein VP1, capsid protein VP2, complete genome. ACCESSION LC048991 VERSION LC048991.2 KEYWORDS . SOURCE Norovirus Hu/GIX/3-250/Tokyo/1995/JPN ORGANISM Norovirus Hu/GIX/3-250/Tokyo/1995/JPN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus; Norovirus GIX. REFERENCE 1 AUTHORS Mori,K., Nagano,M., Yaoita,Y., Asakura,H., Suzuki,A., Isogai,M., Fujiwara,T., Nagashima,M., Suzuki,J., Tohma,K. and Sadamasu,K. TITLE Genetic characteristics of archival noroviruses detected from the 1970s to the 1990s JOURNAL Arch Virol 167 (12), 2723-2727 (2022) PUBMED 36087133 REMARK DOI:10.1007/s00705-022-05595-4 REFERENCE 2 (bases 1 to 7551) AUTHORS Mori,K. TITLE Direct Submission JOURNAL Submitted (10-APR-2015) Contact:Kohji Mori Tokyo Metropolitan Institute of Public Health, Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ COMMENT On Sep 23, 2022 this sequence version replaced LC048991.1. FEATURES Location/Qualifiers source 1..7551 /organism="Norovirus Hu/GIX/3-250/Tokyo/1995/JPN" /mol_type="genomic RNA" /strain="Hu/GIX/3-250/Tokyo/1995/JPN" /isolation_source="human feces" /host="Homo sapiens" /db_xref="taxon:1646491" /country="Japan: Tokyo" /collection_date="1995" /note="genogroup: GVIX" gene 5..5101 /gene="non structural protein" CDS 5..5101 /gene="non structural protein" /codon_start=1 /product="polyprotein" /protein_id="BAW33735.2" /translation="MKMASNDVATAFGSQKATNDSYSTTPPNKEEASVLTNVKVGFKK ILGAVPKASRQHGNIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSINRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKAR KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VRTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPS SEEATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPNPSVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHVSPVYTAALKDELVKTDKIYNKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRCILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" gene 5082..6749 /gene="VP1" CDS 5082..6749 /gene="VP1" /note="structural protein" /codon_start=1 /product="capsid protein VP1" /protein_id="BAW33736.2" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLREPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGSI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="VP2" CDS 6749..7480 /gene="VP2" /note="structural protein" /codon_start=1 /product="capsid protein VP2" /protein_id="BDS00293.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWSG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 gtgaatgaag atggcgtcga atgacgtcgc tactgccttt ggcagccaga aagctaccaa 61 tgacagctat agcacaaccc ctcccaacaa ggaggaggct agtgtgctca ccaacgttaa 121 agttggtttt aaaaagatcc tcggggccgt tcccaaggct tcgagacagc atggcaacat 181 acaaaaaccg ccgatcgttg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc 241 aaacggcgag gacgcggttc actttgtgaa ggaaacggag accatcaagg gattgccaga 301 tttgtccacc gtggaaaacg aatctgaaca ctccccatac acagtcccac cgctgagtga 361 gagggaacac aggccagcaa cagaacccct gcctggcact atacttgaga tgtgggatgg 421 tgagttttac cactactcca tatatgtgga taatggcaag gctcttggtg tgcacaaacc 481 accagcagca atcagcctag caacgataga tttaacacct atatcgttgt attggagacc 541 ggtgtataca ccgccgtacc ttgttcaccc agagacactc aaagggctgg ctggtgaaaa 601 gtttccctac acagctttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattca tggctgaacc ggaggtccat aaataggaca actggattct tcaaacccta 721 ccaaacctgg aacaggaaac ccctcccaac tgtggatgat ggtaagatca agaaggtcgc 781 aaatgcagtt ctgtgcgccc taggatcact tttctcaaaa cccattaagg acctccttgg 841 gaagctaaag ccccttaatc tcctaaatct gctcgcatca tgtgactgga cctttgctgg 901 tgtagtagaa acagtcattc ttgcagcaga gctcttcaat gtcttttgga ccccacctga 961 tgtctctaac ttcattgcct ccataattgg tgactttgag atgcaaggac cagaagacct 1021 tgctgtggag cttgttcccg ttgtcatggg aggcattggt atggtgttag gatttacagc 1081 tgagaagata gggcgcatgt tatcatctgc agcatccact cttagagctt gtaaggacct 1141 tggcaattac gccctggaca ttctaaagct ggtcatgaaa tggttcttcc ccaagaagga 1201 ggagaaggcc gagatggaaa ctctaagagc cattgaggat gccgtccttg acatggaggc 1261 aattggcaac aaccacctca caacattgct caaagacaag gacagcctaa acgcctacat 1321 gaagacctta gacatggagg aggaaaaggc caggaaactc tcaaccaaat catcatcacc 1381 cgacattgtt ggcaccatca atgcaatcct tgcccgcatc gccgctgcaa gatcactcct 1441 gcacaaagcc aaagaggaga tgttcagtcg ggcgaggcct gttgtcgtga tggtctccgg 1501 gagacccggg atcggtaaga cttacctggc tagacaactt gctaagtcaa ttgcaaacag 1561 catgagtggt gaccagaggg taggacttgt cccccgcaat ggggttgacc actgggatgc 1621 ctataggggt gagagagtcg tcctgtggga tgactatggt atgggaaaca caattaaaga 1681 tgccctgact ctacaggagt tggcagacac ctgcccagtc accctcaatt gtgacagaat 1741 cgagaacaag gggaagatgt ttgacagtga tgtcatcata attacaacca atcttgtcaa 1801 ccccgccccc ctcgattacg tcaactttga ggcttgctgt aggcgaattg acttccttgt 1861 ctatgccgag gcaccagaca ttgagaaagt caaaaaggat ttccctgggc aaccagacat 1921 gtggcgtgac catttcaaag ctgattcatc acatataaag ttgtcattag ccccacaggg 1981 tggtttcgac aaaaatggaa acacccctca tgggaagggc accatgaaaa ccctcacgct 2041 gcactcactc actgcacgtg tgatgggctt agtgtgtgag agaaaggatg agttccaatt 2101 acagggggat gaactgcagg tttacaactt tgacacaaac aaagtctctg catttagaaa 2161 gttggcagct gacaacaagt acagttttgt ggagacaatg aaagttggtg cggtcctcaa 2221 gaatgtgcga actctggaag acctaaaatc tgccctcaaa ggagtcaagt tcaaggagtg 2281 tgaaataatc tacaaagggg ctaagtacag ggtggcctcg gatggctgtg gcagtgtctc 2341 ggtctctaag atcaaggatg ttgcatcaca gacagccaat gaagtgcaca cagcgctcct 2401 gagactgagg caggcccggg ccagatacta catcagctgc ttccaagatc ttatctacac 2461 cctgattcag gttgctggag cctcatttgt ggtgcatagg atctcaaaga gattctcctg 2521 ggaccgttgg attaaaccca gtgagagccc tcaagaggaa gaacaaccca gcagtgagga 2581 ggccacaggg agatgggaaa ttgagccaaa ggacacagac cctgaaggta aaaagggtaa 2641 aaacaagaag ggaaggggga ggaaacacac agccttctct agcaagggtc ttagtgatga 2701 agagtacgat gagttcaaga gaatcagaga ggagaagaac ggcaagtact ctatagaaga 2761 atacctccag gaccgtgata gattttatga ggaagtagca gttgcaaggg ccacggaaga 2821 agacttctgt gaagaagagg tggcgaaaat caggcagagg attttcagac ccacaaagaa 2881 gcagaggaag gaggaacgag gcgtccttgg actagtcacc ggttcagaaa tcaggaagag 2941 aagaccagat gacttccagc ctaaaggtaa tttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgag aagctggaat ttgaagcccc tccaagtgtg tggtcacgca tcgtacccct 3061 tggcactggt tggggttttt gggtctcctc caacctcctc ataacaacaa cgcacgtcct 3121 gccaaaagga gtgagagagc tgttcggagt tgacatcaaa caaattcaga tacacaaatc 3181 aggtgagttt tgcaggttca ggtttccaag accgatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggagcccctg aaggcacggt gtgttctatt ctcatcaaaa gaccgactgg 3301 agagatgata ccactcgcag tgaggatggg cacccacgct tccatgaaaa ttcagggcag 3361 aacagttggt ggtcaaatgg gcatgttgct cacaggggca aatgccaaaa acatggacct 3421 gggcacgaac cctggtgact gtggctgccc gtacattttt aaaaggggca atgacattgt 3481 ggtagctggg gttcataccg cagctgcaag gggtggcaac actgtgatct gtgccacgca 3541 gggggctgac ggagaggccg ttcttgaagg aggagaggac aaaggaacat actgtggtgc 3601 cccaatactt ggacttggga aggcccccaa actcagcact aagacaaagt tttggcgttc 3661 ctcacctgat gcactacccc cgggaacgta tgaaccagcc tatctaggtg gaaaagaccc 3721 aagagttgag aagggcccat cactccagca ggttatgaga gaacaactta aacccttcac 3781 cgaacccaga ggaaaaccgc caaatcccag cgttcttgat gaggcaaaga aaactgtgat 3841 gaatgtgttg gagcaaacca taaaccctgc caaaccttgg tcatattccc aagcatgtgc 3901 ttcacttgac aaaacgactt caagtggtag cccacaccac ctgaggaaga atgatcactg 3961 gaatggtgag tctttcaccg gccctttagc cgaccaagct tcaaaggcaa acttaatgta 4021 tgaacaggca aaacacgtga gccccgttta tactgcagcc ctcaaagatg aactagtcaa 4081 gactgacaag atttacaata agataaagaa gaggttgcta tggggttctg acctgggcac 4141 catggtcagg tgtgccagag cctttggtgg gttgatggac agcatgaaag agagttgcgt 4201 gatgttgccc tgcagagttg gaatgaacat gaatgaggat gggccaatca tttttgacaa 4261 acatgcaaaa tataaatacc actatgatgc agattactcc agatgggatt ccacacagca 4321 aagatgcatc ttgtctgctg ccatggaagt tatggtgaaa ttctcagctg aaccggaatt 4381 ggcacaggtg gtagctgaag acttactcgc cccgagccaa ctcgacgtgg gcgattttgt 4441 ggtgtcagtt caagaaggcc ttccttcagg tgtcccatgt acctcccagt ggaactctat 4501 agcacactgg atcattaccc ttagtgcaat ggcagaagtc tctggtctct ccccagatgt 4561 gatccaagcc cactcatgct tctcttttta cggtgatgat gagatagtta gcacagatat 4621 taatctggac ccagcaaaat taaccttgaa acttagggaa tatggattgg tccccaccag 4681 accagacaaa actgagggcc cactagtcat cacagagaac ctccacgggt tgaccttcct 4741 acgcaggcat atcacacgag accctgctgg atggtttggt aaattagatc aggattcaat 4801 cttgaggcag ctctattgga ccagaggacc caaccatgag aatccctatg agagcatggt 4861 tccacactca cagcgcgcga cccagctaat ggcgctgttg ggtgaggcat cgctacacgg 4921 tccccagttt tacaagaaag ttagcaagat ggttatcaat gagatcaaga gtggtggtct 4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagttc agctggctgc tcccgttgca gggcaaagta 5221 atataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg 5281 tgtcccctcg gaacgcaccg ggtgaggtac ttattgattt agaattagga ccagaattaa 5341 atccctatct caatcacctt gcaagaatgt ataatgggta tgtaggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttgtttgca gctgtgcccc 5461 ccagcttccc aacccatggt atctctgcag cacaggcaac tatgctacca catgtgattg 5521 tggatgtcag gcagctggag cctgtccggc tccccctccc tgacgtcagg aatgtgatgt 5581 tccatttctg tcaagagaac aaggagccgc gtatgagaat tgtggcaata ttgtacaccc 5641 ccctccgtgc caacggtgcg ggtgatgatg ttttcactgt ctcatgtcgt gtgctaacaa 5701 gaccctcacc agattttgat tttattttct tggtcccccc ctctgtagag agtaagttga 5761 aacagtttac cctcccaaac ctgcagccaa atgagatgac caattcaaga tttcctacag 5821 gtatcacaca gctttacacc agtccaaaca ccaatttggt tgtccagttc caaaatggca 5881 ggtgtctgct tgatggtaca cttcttggca ccacccctgt cagagctgct gacatctgca 5941 gttttagagg ggttacatca actgaagtag atgcaactga cagccctagg gtggcagggt 6001 cacatagaat tatggtacag cttagggagc cagatggaga ggagttttca cccacaggtc 6061 ccaaccctgc ccctgttggc accccagact ttcaagcagc catatttggc actctcagtc 6121 aaagaaatac tggcggagct gggcagaatt ctaacagagc ccacttcgca tacttctata 6181 caagaaaccc cacatttgca ccaggcatag ggactgttgt attttctttt gacactactg 6241 atttccaaaa tcgtcaacct accaaatttt ctccttctgg tgtgtttgat gatgattctt 6301 ctgagccttt caatcagttt tccctgccat attacaatgg atcactcggt gcagtggacg 6361 ctggaaaact ggctccgcct gtggcaccca attatccagg tgagcagatt ctttatttta 6421 gagggagtat acctttcaaa ggtgggtatg gagaaggtga gattgacagt ttgcttcccc 6481 aggaatggat tacccacttc tatgcagagc aggcccccac acaaggtgac gcagccctgc 6541 tgcgctacta caaccctgac actggtagag tcctctttga gtgcaaactc caccgcgaag 6601 gattcatcac aatcaactac acgggatcca atgctcttgc tgtaccagtc aatggagtct 6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg 6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctt ggcagcggtt tgtcttctct tattggtgcc ggtgccaatg ctataaacca 6841 aaaagttgaa tatgattaca ataggcattt gcaatcagct tcttttcaac atgataagga 6901 catgcttagc tcacaggtgg aagccacaaa gcacctgcag agggaaatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gcgggttttc ccccactgat gcagcaaggg gggctgtcaa 7021 cgcccctatg acacaaatct tggactggag tggcaccaga tattgggccc caggtgcaat 7081 gaaaactacg gcctattcag gccgttttgt cagccaatcc actcacaggc ccattcccaa 7141 tgttgtgcac aagagtgagg gatccacaca ccaaactggg tcatccaccg gatctgtctc 7201 ttctctttcc acatcatcca cccgtgttcc atcatctaca tcctcatcta gtagtacttc 7261 tagaacaaga gactgggtgt ctgaacaaca aagactcagc cctttcatga gaggctctct 7321 tcaaactgca tatgtaactc ctccctcaag ctctgcctct tcagtaagct ctgtttctac 7381 agtcccacac tatgttttag attcatggac tccttctttt aacactaagc atttacccct 7441 gtttgcccat gttaagaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat 7501 tgatttgttt tgtaattagt gaaatgttga ttcttttcta attcggcatt t // LOCUS KJ196290 7551 bp RNA linear VRL 16-OCT-2020 DEFINITION Sapporo-HK299 virus, complete genome. ACCESSION KJ196290 VERSION KJ196290.1 KEYWORDS . SOURCE Sapporo-HK299 virus ORGANISM Sapporo-HK299 virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7551) AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K., Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and Katayama,K. TITLE Direct Submission JOURNAL Submitted (17-JAN-2014) Department of Virology II, National Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama, Tokyo 208-0011, Japan COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7551 /organism="Sapporo-HK299 virus" /mol_type="genomic RNA" /isolate="Sapporo/HK299" /host="Homo sapiens" /db_xref="taxon:2779846" /country="Japan" /collection_date="2007" /note="genotype: GII.P15_GII.15" CDS 5..5101 /codon_start=1 /product="polyprotein" /protein_id="AII73758.1" /translation="MRMASSDVATAFGSQKATNDSYNTPPPNKEEASVLTNVKVGFKK ILGAVPKASRQHGNTQKPSTVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFNNNCYNFCCWVLD LNDSWLNRRSINRTTGFFKPYQAWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPENLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKAR KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIASSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VRTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPS SEEATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLISLERVLPKGVSELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLCTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPSVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHVSPVYTAALKDELVKTDKIYNKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRCILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMSEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" gene 5082..6749 /gene="VP1" CDS 5082..6749 /gene="VP1" /codon_start=1 /product="VP1" /protein_id="AII73759.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLREPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGSV PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="VP2" CDS 6749..7480 /gene="VP2" /codon_start=1 /product="VP2" /protein_id="AII73760.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSISSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 gtgaatgagg atggcgtcga gtgacgtcgc tactgccttt ggcagccaga aagctaccaa 61 tgacagctat aacacacccc ctcccaacaa ggaggaggct agtgtgctca ccaacgttaa 121 agttggtttt aagaagatcc tcggggccgt tcccaaggct tcgagacagc atggcaacac 181 acaaaaaccg tcgaccgttg agatcgatgg tgtggccatg cgtgtgccct ctcccccccc 241 aaacggcgag gacgcggttc actttgtgaa ggaaacggag accatcaagg gattgccaga 301 tttgtccacc gtggaaaacg aatctgaaca ctccccatac acagtcccac cactgagtga 361 gagggaacac aggccagcaa cagaacccct gcctggcact atacttgaaa tgtgggatgg 421 tgagttctac cactactcca tatatgtgga caatggcaag gcccttggtg tgcacaaacc 481 accagcagca atcagccttg caacgataga tttaacacct atatcgttgt attggagacc 541 ggtgtataca ccgccgtacc ttgtccaccc agagacactc aaagggctgg ctggtgaaaa 601 gtttccctat acagctttca acaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattca tggttgaatc ggaggtccat aaacaggaca actggatttt tcaaacccta 721 ccaagcctgg aacaggaagc ccctcccaac tgtggatgat ggtaagatca agaaggttgc 781 gaatgcagtt ctgtgcgccc taggatcact tttctcaaaa cccatcaagg acctccttgg 841 gaagctaaaa ccccttaacc tcctaaatct gctcgcatca tgtgactgga cctttgctgg 901 tgtagtagaa acagttattc ttgcagcaga gctcttcaat gtcttttgga ccccccctga 961 tgtctctaac ttcattgcct ccataattgg tgactttgag atgcaaggac cagaaaacct 1021 cgctgtggag cttgtccccg ttatcatggg aggcattggc atggtgttag gattcacagc 1081 tgagaagata gggcgcatgt tgtcatctgc agcatccact cttagagctt gtaaggatct 1141 tggtaattac gccctggaca ttctaaagct ggtcatgaaa tggttcttcc ccaagaagga 1201 ggagaaggcc gagatggaaa ctctaagagc cattgaggat gccgtccttg acatggaggc 1261 aattggcaac aaccatctca caacattgct caaagacaag gacagcctaa acgcctacat 1321 gaagacctta gacatggagg aggaaaaggc caggaaactc tcaaccaaat catcatcacc 1381 cgacattgtt ggcaccatca acgcaatcct tgcccgcatc gccgcagcaa gatcactcct 1441 gcataaagcc aaagaggaga tgttcagtcg ggcgaggcct gttgtcgtaa tggtctccgg 1501 gagaccaggg atcgggaaga cttacctggc tagacaactt gctaagtcaa tagcaagcag 1561 catgagtggt gatcagaggg taggacttgt cccccgcaat ggtgttgacc attgggacgc 1621 ctataggggt gagagagtcg tcctgtggga tgactatggt atgggaaaca caattaaaga 1681 cgccctgact ctacaggagt tggcagacac ctgcccagtc accctcaatt gtgacaggat 1741 cgagaacaag gggaagatgt ttgacagtga tgtcatcata attacaacca atcttgtcaa 1801 ccccgccccc ctcgattacg tcaactttga ggcttgctgt agacgaattg acttccttgt 1861 ctatgccgag gcaccagaca ttgagaaagt caaaaaggat ttccctgggc aaccagacat 1921 gtggcgtgac catttcaaag ctgattcgtc acatataaag ttgtcattag ccccacaggg 1981 tggtttcgac aaaaacggaa acacccctca tgggaagggc accatgaaaa ccctcacgct 2041 gcattcactc actgcacgtg tgatgggctt agtgtgtgag agaaaggacg agttccaatt 2101 gcagggggat gaactgcagg tttacaactt tgacacaaac aaagtctctg catttagaaa 2161 attggcagct gacaacaagt atagttttgt ggagacaatg aaagttggtg cggtcctcaa 2221 gaatgtgcga accctggagg acctaaaatc tgccctcaaa ggagtcaagt tcaaggagtg 2281 tgaaataatc tacaaagggg ctaagtacag ggtcgcctcg gatggctgtg gcagtgtctc 2341 ggtctccaag atcaaggatg ttgcatcaca gacagccaat gaagtgcata cagcgctcct 2401 gagactgagg caggcccggg ccagatatta catcagctgc ttccaagatc ttatctatac 2461 actgatccag gttgctggag cctcatttgt ggtgcacagg atctcaaaga gattctcctg 2521 ggaccgttgg attaaaccca gtgagagccc tcaagaggaa gaacaaccta gcagtgagga 2581 ggccacagga agatgggaaa ttgagccaaa ggacacagac cctgaaggta agaagggtaa 2641 aaacaagaag ggaaggggga ggaaacacac agccttctct agcaagggtc ttagtgatga 2701 agagtacgat gagttcaaga gaatcagaga ggagaagaac ggcaagtact ctatagaaga 2761 atacctccag gaccgtgata gattttatga ggaagtggca gtcgcaaggg ccacggaaga 2821 agacttctgt gaagaagagg tggcaaaaat tagacagaga attttcagac ccacaaagaa 2881 acagaggaag gaggaacggg gcgtccttgg actagtcacc ggttcggaaa tcaggaagag 2941 aagaccagat gacttccaac ccaaaggtaa tttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgag aagctggaat ttgaagcccc tccaagtgtg tggtcacgca tcgtacccct 3061 tggtactggt tggggtttct gggtctcctc caacctcctc atctctctgg aacgagtcct 3121 gccaaaagga gtgagtgagc tgttcggagt tgacatcaaa caaattcaga tacacaagtc 3181 aggtgagttt tgcaggttca ggtttccaag acctatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggagcccctg aaggcacggt gtgttctatc ctcgtcaaaa gaccgactgg 3301 agagatgata ccactcgcag tgaggatggg cacccacgct tccatgaaaa ttcagggcag 3361 aacagttggt ggtcaaatgg gcatgttgct cacaggggca aatgccaaaa acatggacct 3421 gggcacgaac cctggtgact gtggctgccc gtacattttt aaaaggggca atgacattgt 3481 ggtagctggg gttcacaccg cagctgcaag gggtggcaac actgtgatct gtgccacgca 3541 gggggctgac ggagaggccg ttcttgaagg aggagaggac aaaggaacat actgtggtgc 3601 cccaatactt ggacttggga aggcccctaa gctctgcact aaaacaaagt tctggcgttc 3661 ctcacctgat gcactacccc cgggaacgta tgaaccagcc tatctaggtg gaaaagaccc 3721 aagagttgag aagggcccat cactccagca ggttatgaga gaacaactta aacccttcac 3781 cgaacccaga ggaaaaccgc caaagcccag cgttctcgat gaggcaaaga aaactgtgat 3841 gaatgtgttg gagcaaacca taaaccctgc caaaccctgg tcatactcac aagcatgtgc 3901 ctcacttgac aaaacgactt caagtggtag cccacaccac ctaaggaaga atgatcactg 3961 gaatggtgag tctttcaccg gccctttagc cgaccaagct tcaaaggcaa acttaatgta 4021 tgaacaggca aaacacgtga gccccgttta caccgcagcc ctcaaagatg aactagtcaa 4081 gactgacaag atttataata agataaagaa gaggttgcta tggggttctg acctgggtac 4141 catggtcagg tgtgccagag cctttggtgg gttaatggac agcatgaaag agagttgtgt 4201 gatgttgccc tgcagagttg gaatgaatat gaatgaggat gggccaatca tttttgacaa 4261 acatgcaaaa tataaatacc actatgatgc agactactcc agatgggact ccacgcagca 4321 aagatgcatc ttgtctgctg ccatggaggt tatggtgaaa ttctcagctg aaccggaatt 4381 ggcacaggtg gtggctgaag acctactcgc cccgagccaa ctcgacgtgg gcgattttgt 4441 ggtgtcagtt caggaaggcc ttccttcagg tgtcccatgt acctcccagt ggaactctat 4501 agcacactgg atcattaccc ttagtgcaat gtcagaagtc tctggtctct ccccagatgt 4561 gatccaagcc cactcatgct tctcttttta tggtgatgat gagatagtta gcacagatat 4621 taatctggac ccagcaaaat taaccttgaa acttagggaa tatggattgg tccccaccag 4681 accagacaaa actgagggcc cactagtcat tacagagaac ctccacgggt tgaccttcct 4741 acgcaggcac atcacacgag accctgctgg atggtttggt aagttagacc aggattcaat 4801 tttgagacag ctctattgga ccagaggacc caaccatgag aatccctatg agagcatggt 4861 tccgcactca cagcgcgcga cccagctaat ggcgttgttg ggtgaggcat cgctacacgg 4921 tccccagttt tacaagaaag ttagcaagat ggtcatcaat gagatcaaaa gtggtggtct 4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt tccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagtcc agctggctgc tcccgttgca gggcaaagta 5221 acataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg 5281 tgtcccctcg gaacgcaccg ggtgaggtac ttattgattt agaattagga ccagaattaa 5341 acccctatct caaccacctt gcaagaatgt ataatgggta tgtaggagga atggaggtgg 5401 aagttgttct tgccgggaat gcgttcacgg caggtaagat cttgtttgca gctgtgcccc 5461 ccagcttccc aacccatggt atctctgcag cacaggctac tatgctaccc catgtgattg 5521 tggatgtcag gcagttggag cctgttcggc tccccctccc tgacgtcagg aatgtgatgt 5581 ttcacttctg tcaagagaac aaggagccgc gtatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggagct ggtgatgatg ttttcaccgt ctcatgtcgt gtgctaacaa 5701 gaccctcacc agattttgat tttattttct tggtcccccc ctctgtagag agtaagttga 5761 aacagtttac cctcccaaac ctgcagccaa atgagatgac caattcaaga tttcccacag 5821 gtatcacaca gctttatacc agtccaaaca ccaatttggt tgtccagttc caaaatggca 5881 ggtgcctact tgatggtaca cttcttggta ctacccctgt cagagctgct gacatctgca 5941 gttttagagg ggtcacatca actgaagtag atgcaactga cagccccagg gtggcagggt 6001 cacatagaat tatggtacag cttagggagc cagatggaga ggagttttca cccacaggtc 6061 ccaaccctgc ccctgttggc accccagact ttcaagcagc catatttggc accctcagtc 6121 aaagaaacac tggtggagct gggcagaatt ctaacagagc ccacttcgca tatttctaca 6181 caagaaaccc cacctttgca ccaggcatag ggactgttgt attttctttt gacaccactg 6241 attttcaaaa tcgtcaacct accaaatttt ccccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt caatcagttt tccctgccat attataatgg atcactcggt gcagtggacg 6361 ctggaaaact ggctccacct gtggcaccca attatccagg tgagcagatt ctttatttca 6421 gagggagtgt acctttcaaa ggtggttatg gagaaggtga gattgacagt ttgcttcccc 6481 aggaatggat tacccatttc tatgcagagc aggcccccac acaaggtgac gcagccctgc 6541 tgcgctacta caaccctgac actggtagag tcctctttga gtgcaaactc catcgtgaag 6601 gattcatcac aatcaactac acgggatcca atgctcttgc tgtgccggtc aatggagtct 6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg 6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctt ggcagcggtt tatcttctct tattggtgcc ggtgccaatg ctataaacca 6841 gaaagttgaa tatgattaca ataggcattt gcaatcagct tctttccaac atgataagga 6901 catgctcagt tcacaggtgg aagccacaaa acacctgcag agggaaatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gcgggttttc ccccactgat gcagcaaggg gggctgtcaa 7021 cgctcctatg acacaaatct tggactggaa tggcaccaga tattgggccc caggtgcaat 7081 gaaaaccacg gcctactcag gtcgttttgt cagccaatcc actcacaggc ccattcccaa 7141 tgttgtgcac aagagtgagg gatccacaca ccaaactggg tcatccaccg gatctatctc 7201 ttctctttcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtacttc 7261 tagaacaaga gactgggtgt ctgaacaaca aagactcagc cctttcatga gaggttctct 7321 tcaaactgct tatgtaactc ctccctcaag ctctgcctct tcagtaagct ctgtttctac 7381 agtcccacat tatgttttag attcatggac cccttctttt aacactaagc atttacccct 7441 gtttgcccac gttaagaaaa ggggacaatc tcaagtttaa tctaccactc atggttttat 7501 tgatttgttt tgtaattagt gaaatgttga ttcttttcta attcggcatt t // LOCUS GQ856474 3249 bp RNA linear VRL 05-OCT-2011 DEFINITION Norovirus Hu/GII.4/Beijing/55161/2008/CHN RNA-dependent RNA polymerase gene, partial cds; and capsid and minor structural protein genes, complete cds. ACCESSION GQ856474 VERSION GQ856474.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Beijing/55161/2008/CHN ORGANISM Norovirus Hu/GII.4/Beijing/55161/2008/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3249) AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N., Tan,M., Jiang,T. and Duan,Z.J. TITLE Genetic diversity of noroviruses in Chinese adults: Potential recombination hotspots and GII-4/Den Haag-specific mutations at a putative epitope JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011) PUBMED 21803173 REFERENCE 2 (bases 1 to 3249) AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and Jiang,T. TITLE Direct Submission JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National Institute for Viral Disease Control and Prevention, China CDC, Ying-Xin St., Xuan-Wu District, Beijing 100052, China FEATURES Location/Qualifiers source 1..3249 /organism="Norovirus Hu/GII.4/Beijing/55161/2008/CHN" /mol_type="genomic RNA" /host="Homo sapiens" /db_xref="taxon:679304" /country="China: Beijing" /collection_date="2008" CDS <1..801 /note="ORF1" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ACY00649.1" /translation="RWDSTQQRCILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVG DFVVSVQEGLPSGVPCTSQWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEI VSTDINLDPTKLTLKLREYGLVPTRPDKTGGPLVITEDLHGLTFLRRHITRDPAGWFG KLDQDSILRQLYWTRGPNHENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMV INEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" CDS 782..2449 /note="ORF2" /codon_start=1 /product="capsid" /protein_id="ACY00650.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRDAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV LPSVESKLKQFTLPNLQPNEMTNSRFPTGIIQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRARFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" CDS 2449..3180 /note="ORF3" /codon_start=1 /product="minor structural protein" /protein_id="ACY00651.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSIHRPIPNVVHKSDGPTHQTGSTTGSISSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQSLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 aggtgggact caacacaaca aagatgtatc ctatctgctg ccatggaagt tatggtgaag 61 ttctcagctg aaccggaatt ggcacaggtg gtggctgaag acttgctcgc cccaagccaa 121 ctcgacgtgg gcgattttgt ggtgtcagtc caagaaggcc ttccctcagg tgttccatgt 181 acctcccagt ggaactccat agcacattgg atcattaccc ttagtgccat ggcagaagtt 241 tctggcctct ccccagatgt gatccaagcc cactcatgct tctctttcta cggtgatgat 301 gaaatagtta gcacagacat caacctggac ccaacaaagc taaccttaaa gctcagggaa 361 tatggattgg tccccaccag accagacaaa actgggggcc cactagtcat cacagaggat 421 ctccacggat tgaccttcct acgcagacac atcacacggg atcctgctgg gtggtttggc 481 aaattagatc aggactcaat cttaaggcag ctctactgga ctaggggacc caaccatgag 541 aacccctatg agtgcatggt cccacattca cagcgcgcaa ctcagttaat ggcgctgttg 601 ggtgaggcat cgttgcacgg tccccagttc tacaagaaag tcagcaagat ggttatcaat 661 gaaattaaga gtggtggtct ggaattttac gtgcccagac aggaggccat gttcaggtgg 721 atgagattct ctgacctcag cacgtgggag ggcgatcgca atctggctcc cgacggtgtg 781 aatgaggatg gcgtcgagtg acgcgcccgt ttctggcacc gatggtgcgg caggactcgt 841 tccagagagt caacaagaag tcttgccttt agagcccgtc gcgggagttc agctggctgc 901 tcccgtagca gggcaaagta atataattga cccctggatt agaatgaatt ttgtgcaagc 961 cccggccggt gagttcactg tgtcccctcg ggacgcaccg ggtgaggtac ttattgattt 1021 agaattagga ccagaattaa atccctatct taatcacctt gcaagaatgt ataatgggta 1081 tgtaggagga atggaggtgg aagttgtcct tgccgggaat gcgttcacgg cgggtaagat 1141 cttattcgca gctgtgcccc ccagcttccc aacccatggc atctctgcag cacaggcaac 1201 tatgttgcca catgtgattg tggatgtcag gcagctggag cctgttcggc tccctctccc 1261 tgatgtcagg aatgtgatgt tccatttctg tcaagagaat aaggagccgc gcatgagaat 1321 tgtggcaata ttgtacaccc ccctccgtgc taacggtgcg ggtgacgatg ttttcactgt 1381 ctcatgtcgt gtgctaacaa gaccctcacc agattttgat tttattttct tagtcctccc 1441 ctctgtagag agtaagttga aacagtttac cctcccaaat ctgcagccaa atgagatgac 1501 caattcgaga ttccccactg gtattataca gctttacacc agtccaaaca ccaatttggt 1561 tgtccagttc caaaatggca ggtgtctact tgatggcaca cttcttggta ccacccctgt 1621 cagagctgct gacatctgca gttttagagg ggtcacatca actgaagttg atgcaactga 1681 cagtcccaga gtggcagggt cacatagaat tatggtgcag cttaaggagc cagatggaga 1741 ggagttttca cccacaggtc ccaaccctgc ccctgttggc actccagact ttcaagcagc 1801 catatttggc acccttagtc aaagaaatac tggcggggct gggcagaact ccaacagagc 1861 ccgcttcgca tacttctata ctagaaaccc tacattcgca ccaggcatag ggacagttgt 1921 attttctttt gacaccactg attttcagaa tcgccaacct accaaattct ctccttctgg 1981 tgtgtttgat gatgactctt ctgaaccttt caatcaattt tctctaccat attataatgg 2041 atcactcggt gcagtggatg ctgggaaact ggctccgcct gtggcaccca attatccagg 2101 tgagcagatt ctttatttca gagggaatat acccttcaaa ggtgggtatg gagagggtga 2161 aattgatagc ttgcttcccc aggaatggat cacccacttt tatgcagagc aggcccccac 2221 acaaggtgac gcagccctgc tgcgctacta caaccctgac actggcagag tcctctttga 2281 gtgcaaactc caccgcgagg gattcatcac aatcaattac acaggatcca atgctcttgc 2341 tgtaccagtc aatggagtct tcaggtttga gggctgggtt aacaaattct acacactgac 2401 ccccatggga aatggcaatg gccgcagggg tagaagaagg gagttataat ggctggagct 2461 ttcttcgcag gtcttgcttc tgatgttctc ggcagcggtt tgtcttctct tatcggtgcc 2521 ggtgccaatg ccataaatca aaaggttgaa tatgattaca acaggcactt gcaatcagct 2581 tcttttcaac atgacaagga tatgctcaac tcacaggtgg aagccacaaa gcacttacag 2641 agggagatga tggccatcaa ggaaggcatg ctgcttaagg gtgggttttc ccccactgac 2701 gcagcaagag gggctgtcaa cgcccctatg acacaaatct tggattggaa tggcaccaga 2761 tactgggccc caggggcaat gaaaactacg gcctattcag gccggtttgt tagccaatcc 2821 atccacaggc ctattcccaa tgttgtgcac aagagtgatg gacccacaca ccaaactggg 2881 tcaaccacag gatctatctc ttctctttct acatcatcca cccgtgtccc atcatccacg 2941 tcctcatcta gcagcacttc tagaacaaga gactgggtgt ctgaacagca aagcctcagt 3001 cctttcatga gaggctctct tcacaccgca tatgtgactc ctccatcaag ctctgcctct 3061 tcagtaagct ctgtttctac agtcccacac tatgttttag attcatggac cccctctttc 3121 aataccaagc atttacctct gtttgcccat gttaagaaaa ggggacaatc tcaagtttaa 3181 tctaccactc atggtttgat tgatttgttt tgtaattagt gaaatgttga ttcttctaat 3241 tcggcattt // LOCUS MW261787 7513 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS428 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261787 VERSION MW261787.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7513) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7513) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7513 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS428" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96774.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVMFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRMREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96775.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVASTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7444 /gene="ORF3" CDS 6713..7444 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96776.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttttgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agtcctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggaccccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ttacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gaaaccctaa gagccattga 1201 ggatgccgtt cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactctacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatcttg tcaatcctgc tccccttgat tatgttaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggatttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaagttgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc atgttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcgt cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatga gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctgtccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacag cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gtgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttgat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttatct gctgccatgg aagttatggt 4321 aaagttctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttttctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgagacctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttgc atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt gcagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accccacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggaatggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctattc ccaatgttgt gcataagagt gagggatcca cacaccaaac 7141 tgggtcatct accggatctg tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagta cttctagaac aagagactgg gtgtcagaac aacaaagact 7261 cagccctttc atgagaggct ctcttcaaac tgcatatgtg actcctcctt caagctctgc 7321 ctcttcagta agctctgttt ctacagtccc acactatgtt ttagattcat ggactccttc 7381 ttttaacact aagcatttac cactgtttgc ccatgttaag aaaaggggac aatctcaagt 7441 ttaatctacc actcatggtt tgattgattt gttttgtaat tagtgaaatg ttgattcttt 7501 tctaattcgg cat // LOCUS MW261788 7513 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS414 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261788 VERSION MW261788.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7513) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7513) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7513 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS414" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96777.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVMFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96778.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7444 /gene="ORF3" CDS 6713..7444 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96779.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttttgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggactccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ttacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gaaaccctaa gagccattga 1201 ggatgccgtt cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactctacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatcttg tcaatcctgc tccccttgat tatgttaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggatttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaagttgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcagtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc atgttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcgt cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctgtccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gtgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag ttaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttgat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttatct gctgccatgg aagttatggt 4321 aaaattctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttttctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgagacctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttac atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt gcagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accctacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggaatggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctattc ccaatgttgt gcataagagt gagggatcca cacaccaaac 7141 tgggtcatct accggatctg tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagta cttctagaac aagagactgg gtgtcagaac aacaaagact 7261 cagccctttc atgagaggct ctcttcaaac tgcatatgtg actcctcctt caagctctgc 7321 ctcttcagta agctctgttt ctacagtccc acactatgtt ttagattcat ggactccttc 7381 ttttaacact aagcatttac cactgtttgc ccatgttaag aaaaggggac aatctcaagt 7441 ttaatctacc actcatggtt tgattgattt gttttgtaat tagtgaaatg ttgattcttt 7501 tctaattcgg cat // LOCUS MW261789 7513 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS413 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261789 VERSION MW261789.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7513) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7513) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7513 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS413" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96780.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVMFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96781.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7444 /gene="ORF3" CDS 6713..7444 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96782.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttttgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggactccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ttacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gaaaccctaa gagccattga 1201 ggatgccgtt cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactctacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatcttg tcaatcctgc tccccttgat tatgttaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggatttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaaattgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc atgttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcgt cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctgtccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gtgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttgat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttatct gctgccatgg aagttatggt 4321 aaagttctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttttctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgagacctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttac atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt gcagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accctacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggaatggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctattc ccaatgttgt gcataagagt gagggatcca cacaccaaac 7141 tgggtcatct accggatctg tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagta cttctagaac aagagactgg gtgtcagaac aacaaagact 7261 cagccctttc atgagaggct ctcttcaaac tgcatatgtg actcctcctt caagctctgc 7321 ctcttcagta agctctgttt ctacagtccc acactatgtt ttagattcat ggactccttc 7381 ttttaacact aagcatttac cactgtttgc ccatgttaag aaaaggggac aatctcaagt 7441 ttaatctacc actcatggtt tgattgattt gttttgtaat tagtgaaatg ttgattcttt 7501 tctaattcgg cat // LOCUS MW261790 7510 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS402 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261790 VERSION MW261790.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7510) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7510) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7510 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS402" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96783.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAFLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96784.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7441 /gene="ORF3" CDS 6713..7441 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96785.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHSEGSTHQTGSSTGSVSSLSTSSTRVP SSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttttgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aagcccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggactccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ctacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gagaccctaa gagccattga 1201 ggatgccgtc cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaacgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactctacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatctcg tcaatcctgc tccccttgat tatgtcaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggacttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaagttgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc aagttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcgt cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctttccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gtgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttaat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcagagatg catcttatct gctgccatgg aagttatggt 4321 aaagttctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttctctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgagacctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttac atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt acagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accctacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgac tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggaatggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctattc ccaatgttgt gcatagtgag ggatccacac accaaactgg 7141 gtcatctacc ggatctgtct cttctctttc cacatcatcc acccgtgttc catcatctac 7201 atcctcatct agtagtactt ctagaacaag agactgggtg tcagaacaac aaagactcag 7261 ccctttcatg agaggctctc ttcaaactgc atatgtgact cctccttcaa gctctgcctc 7321 ttcagtaagc tctgtttcta cagtcccaca ctatgtttta gattcatgga ctccttcttt 7381 taacactaag catttaccac tgtttgccca tgttaagaaa aggggacaat ctcaagttta 7441 atctaccact catggtctga ttgatttgtt ttgtaattag tgaaatgttg attcttttct 7501 aattcggcat // LOCUS MW261791 7513 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS401 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261791 VERSION MW261791.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7513) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7513) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7513 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS401" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96786.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVMFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96787.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7444 /gene="ORF3" CDS 6713..7444 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96788.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttttgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggactccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ttacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gaaaccctaa gagccattga 1201 ggatgccgtt cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactctacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatcttg tcaatcctgc tccccttgat tatgttaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggatttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaaattgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc atgttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcgt cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctgtccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gtgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttgat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttatct gctgccatgg aagttatggt 4321 aaagttctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttttctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgagacctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttac atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt gcagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accctacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggaatggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctattc ccaatgttgt gcataagagt gagggatcca cacaccaaac 7141 tgggtcatct accggatctg tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagta cttctagaac aagagactgg gtgtcagaac aacaaagact 7261 cagccctttc atgagaggct ctcttcaaac tgcatatgtg actcctcctt caagctctgc 7321 ctcttcagta agctctgttt ctacagtccc acactatgtt ttagattcat ggactccttc 7381 ttttaacact aagcatttac cactgtttgc ccatgttaag aaaaggggac aatctcaagt 7441 ttaatctacc actcatggtt tgattgattt gttttgtaat tagtgaaatg ttgattcttt 7501 tctaattcgg cat // LOCUS MW261792 7512 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS398 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261792 VERSION MW261792.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7512) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7512) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7512 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS398" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96789.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAFLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96790.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7441 /gene="ORF3" CDS 6713..7441 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96791.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHSEGSTHQTGSSTGSVSSLSTSSTRVP SSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLDS WTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttttgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aagcccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggactccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ctacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gagaccctaa gagccattga 1201 ggatgccgtc cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaacgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactctacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatctcg tcaatcctgc tccccttgat tatgtcaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggacttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaagttgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc aagttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcgt cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctttccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gtgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttaat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcagagatg catcttatct gctgccatgg aagttatggt 4321 aaagttctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttctctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgagacctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttac atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt acagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accctacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgac tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggaatggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctattc ccaatgttgt gcatagtgag ggatccacac accaaactgg 7141 gtcatctacc ggatctgtct cttctctttc cacatcatcc acccgtgttc catcatctac 7201 atcctcatct agtagtactt ctagaacaag agactgggtg tcagaacaac aaagactcag 7261 ccctttcatg agaggctctc ttcaaactgc atatgtgact cctccttcaa gctctgcctc 7321 ttcagtaagc tctgtttcta cagtcccaca ctatgtttta gattcatgga ctccttcttt 7381 taacactaag catttaccac tgtttgccca tgttaagaaa aggggacaat ctcaagttta 7441 atctaccact catggtctga ttgatttgtt ttgtaattag tgaaatgttg attcttttct 7501 aattcggcat tt // LOCUS MW261793 7515 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS385 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261793 VERSION MW261793.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS385" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96792.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVMFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96793.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7444 /gene="ORF3" CDS 6713..7444 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96794.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttttgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggactccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ttacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gaaaccctaa gagccattga 1201 ggatgccgtt cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactctacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatcttg tcaatcctgc tccccttgat tatgttaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggatttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaagttgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc atgttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcgt cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaaa gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctgtccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gtgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttgat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttatct gctgccatgg aagttatggt 4321 aaagttctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 tcaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttttctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgagacctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttac atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt gcagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accctacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactagctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggaatggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctattc ccaatgttgt gcataagagt gagggatcca cacaccaaac 7141 tgggtcatct accggatctg tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagta cttctagaac aagagactgg gtgtcagaac aacaaagact 7261 cagccctttc atgagaggct ctcttcaaac tgcatatgtg actcctcctt caagctctgc 7321 ctcttcagta agctctgttt ctacagtccc acactatgtt ttagattcat ggactccttc 7381 ttttaacact aagcatttac cactgtttgc ccatgttaag aaaaggggac aatctcaagt 7441 ttaatctacc actcatggtt tgattgattt gttttgtaat tagtgaaatg ttgattcttt 7501 tctaattcgg cattt // LOCUS MW261794 7515 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS384 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261794 VERSION MW261794.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS384" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96795.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVMFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96796.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7444 /gene="ORF3" CDS 6713..7444 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96797.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttttgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggactccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ttacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gaaaccctaa gagccattga 1201 ggatgccgtt cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactctacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatcttg tcaatcctgc tccccttgat tatgttaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggatttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaagttgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc atgttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcgt cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaaa gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctgtccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gtgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttgat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttatct gctgccatgg aagttatggt 4321 aaagttctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 tcaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttttctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgagacctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttac atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt gcagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accctacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactagctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggaatggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctattc ccaatgttgt gcataagagt gagggatcca cacaccaaac 7141 tgggtcatct accggatctg tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagta cttctagaac aagagactgg gtgtcagaac aacaaagact 7261 cagccctttc atgagaggct ctcttcaaac tgcatatgtg actcctcctt caagctctgc 7321 ctcttcagta agctctgttt ctacagtccc acactatgtt ttagattcat ggactccttc 7381 ttttaacact aagcatttac cactgtttgc ccatgttaag aaaaggggac aatctcaagt 7441 ttaatctacc actcatggtt tgattgattt gttttgtaat tagtgaaatg ttgattcttt 7501 tctaattcgg cattt // LOCUS MW261795 7515 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS383 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261795 VERSION MW261795.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS383" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96798.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLSDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLINPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVATQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVNYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96799.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7444 /gene="ORF3" CDS 6713..7444 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96800.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWSG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAFVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaata actgctacaa 601 cttttgttgc tgggttctgg acctcagtga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggactccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ctacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gagaccctaa gagccattga 1201 ggatgccgtc cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactttacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatctta tcaatcctgc tccccttgat tatgtcaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggacttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaagttgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc aagttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcga cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tgaactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctgtccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gcgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttaat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttatct gctgccatgg aagttatggt 4321 aaagttctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttttctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctagaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgaggcctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttac atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt gcagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accctacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggagtggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctatcc ccaatgttgt gcataagagt gagggatcca cacaccaaac 7141 tgggtcatct accggatctg tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagta cttctagaac aagagactgg gtgtcagaac aacaaagact 7261 cagccctttc atgagaggct ctcttcaaac tgcatttgtg actcctcctt caagctctgc 7321 ctcttcagta agctctgttt ctacagtccc acactatgtt ttagattcat ggactccttc 7381 ttttaacact aagcatttac cactgtttgc ccatgttaag aaaaggggac aatctcaagt 7441 ttaatctacc actcatggtc tgattgattt gttttgtaat tagtgaaatg ttgattcttt 7501 tctaattcgg cattt // LOCUS MW261796 7515 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS381 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261796 VERSION MW261796.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS381" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96801.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVMFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96802.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7444 /gene="ORF3" CDS 6713..7444 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96803.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttttgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggactccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ttacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gaaaccctaa gagccattga 1201 ggatgccgtt cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactctacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatcttg tcaatcctgc tccccttgat tatgttaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggatttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaagttgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcagtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc atgttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcgt cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctgtccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gtgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag ttaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttgat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttatct gctgccatgg aagttatggt 4321 aaaattctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttttctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgagacctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttac atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt gcagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accctacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggaatggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctattc ccaatgttgt gcataagagt gagggatcca cacaccaaac 7141 tgggtcatct accggatctg tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagta cttctagaac aagagactgg gtgtcagaac aacaaagact 7261 cagccctttc atgagaggct ctcttcaaac tgcatatgtg actcctcctt caagctctgc 7321 ctcttcagta agctctgttt ctacagtccc acactatgtt ttagattcat ggactccttc 7381 ttttaacact aagcatttac cactgtttgc ccatgttaag aaaaggggac aatctcaagt 7441 ttaatctacc actcatggtt tgattgattt gttttgtaat tagtgaaatg ttgattcttt 7501 tctaattcgg cattt // LOCUS MW261797 7515 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS379 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261797 VERSION MW261797.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS379" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96804.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVMFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96805.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7444 /gene="ORF3" CDS 6713..7444 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96806.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttttgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggactccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ttacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gaaaccctaa gagccattga 1201 ggatgccgtt cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactctacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatcttg tcaatcctgc tccccttgat tatgttaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggatttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaagttgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc atgttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcgt cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctgtccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gtgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttgat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttatct gctgccatgg aagttatggt 4321 aaagttctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttttctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgagacctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttac atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt gcagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accctacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggaatggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctattc ccaatgttgt gcataagagt gagggatcca cacaccaaac 7141 tgggtcatct accggatctg tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagta cttctagaac aagagactgg gtgtcagaac aacaaagact 7261 cagccctttc atgagaggct ctcttcaaac tgcatatgtg actcctcctt caagctctgc 7321 ctcttcagta agctctgttt ctacagtccc acactatgtt ttagattcat ggactccttc 7381 ttttaacact aagcatttac cactgtttgc ccatgttaag aaaaggggac aatctcaagt 7441 ttaatctacc actcatggtt tgattgattt gttttgtaat tagtgaaatg ttgattcttt 7501 tctaattcgg cattt // LOCUS MW261798 7504 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS359 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261798 VERSION MW261798.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7504) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7504) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7504 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS359" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96807.1" /translation="FGSQKATNDSYSTPPPNKEETSVLTNVKVGFKKILGAVPKASRQ HGNIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHRAKEEMFSRARPVVVMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVKFKECEIVYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGDDKGTYCGAPILGLGKAPKLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPSVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYNKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96808.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLREPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7435 /gene="ORF3" CDS 6713..7435 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96809.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWSG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSISSLSTSSTRV PSSTSSSSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLDSWT PSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ctttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 gactagtgtg ctcaccaacg ttaaagttgg ttttaaaaag attctcgggg ccgttcccaa 121 ggcttcgaga cagcatggca acatacaaaa accgccgatc gttgagatcg atggtgtggc 181 catgcgtgta ccctctcccc ccccaaacgg cgaagacgcg gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgctga gtgagaggga acacaggcca gcaacagaac ccctgcctgg 361 cactatactt gagatgtggg atggtgagtt ctatcactac tccatatatg tggacaatgg 421 taaggctctt ggtgtgcaca aaccaccagc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 actcaaaggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttctgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaatgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagct aaagcccctt aatctcctaa atctgctcgc 841 atcatgtgac tggacctttg ctggtgtagt agaaacagtc attcttgcag cagagctctt 901 caatgtcttt tggactccac ctgatgtctc taacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtc cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattca cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ttacgccctg gacattctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gaaactctaa gagccattga 1201 ggacgctgtt cttgacatgg aggcaattgg caacaaccac ctcacaacat tgctcaaaga 1261 caaggacagc ctaagcgcct acatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga ttcttgcccg 1381 tattgccgct gcaagatcac tcctgcacag agccaaagag gagatgttca gtcgggcgag 1441 gcctgttgtc gtgatggtct ccgggaggcc cgggatcggg aagacttacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgaccag agggtgggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggtatggga aacacaatta aagatgccct gactctacag gagttggcag acacctgccc 1681 agtcaccctt aattgtgaca gaatcgagaa caaagggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatcttg tcaaccccgc ccccctcgat tacgtcaact ttgaggcttg 1801 ctgtaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggatttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catcacatat 1921 aaagttgtca ctagccccac agggtggttt cgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg aaaaccctca cgctgcactc gctcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaagtc tctgcattta gaaagctggc agctgacaac aagtacagtt ttgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gcgaactctg gaagacctaa aatctgccct 2221 caaaggagtc aagttcaagg agtgtgaaat agtctacaaa ggggctaagt acagggtcgc 2281 ctcggatggc tgtggcagtg tctcggtctc taagatcaag gatgttgcat cacagacagc 2341 caatgaagtg cacacagcgc tcctgagact gaggcaggcc cgggccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgct ggagcctcat ttgtggtgca 2461 taggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cccagcagtg aggtggctac agggagatgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaagggaagg ggaaggaaac acacagcctt 2641 ctctagcaag ggtcttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 agcagttgca agggccacgg aagaagactt ctgtgaagaa gaggtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaatcagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccaag 3001 tgtgtggtca cgcatcgtgc cccttggcac tggttggggt ttttgggtct cttccaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatc cagatacaca aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggagcc cctgaaggca cggtgtgttc 3241 tatcctcatc aaaagaccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttccatg aaaattcagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ttttaaaagg ggcaatgaca ttgtagtagc tggggttcac accgcagctg caaggggtgg 3481 caataccgtg atctgtgcca cgcagggagc tgacggagag gccgtccttg aaggaggaga 3541 tgacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ccaaactcag 3601 cactaagaca aagttttggc gttcctcacc cgatgcacta cccccgggaa cgtatgaacc 3661 ggcctatcta ggtggaaaag acccaagagt tgagaagggc ccatcactcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccagcgttct 3781 tgatgaggca aagaaaactg tgatgaatgt gttggagcaa accataaacc ctgccaaacc 3841 ctggtcatat tcccaagcat gcgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaatgatc actggaatgg tgagtctttc accggccctt tagccgacca 3961 agcttcaaag gcaaacctaa tgtatgaaca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aataagataa agaagaggtt 4081 gctgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttaat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 ggatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttgtct gctgccatgg aagtcatggt 4321 aaagttctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttcctt caggtgtccc 4441 atgcacctcc cagtggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtctctggt ctctccccag atgtgatcca agcccactca tgcttctctt tttacggtga 4561 tgatgagata gttagcacag acattaatct ggacccagca aaattaacct tgaaacttag 4621 ggaatatgga ttggtcccca ccagaccaga caaaactgag ggcccactag tcatcacaga 4681 gaacctccac gggttgacct tcctacgcag gcacatcaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggact caatcttaag gcagctctat tggaccagag gacccaacca 4801 tgagaatccc tatgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctac acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggtg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 gtggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaatataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgtggg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcttgtt tgcagctgtg ccccccagct tcccaaccca tggtatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tctgtcaaga gaacaaggag ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgccaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acaagaccct caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctgcag ccaaatgaga 5761 tgaccaattc aagatttcct acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggttgtcca gttccaaaat ggcaggtgtc tgcttgatgg tacacttctt ggcaccaccc 5881 ctgttagagc tgctgacatc tgcagtttta gaggggttac atcaactgaa gttgatgcaa 5941 ctgacagccc cagggtagca gggtcacata gaattatggt gcagcttagg gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttc tacacaagaa accccacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgacact actgatttcc aaaatcgtca acctaccaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattata 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagaag 6421 gtgaaattga cagtttactt ccccaggaat ggatcaccca cttctatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccatcgc gaaggattca ttacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggtcgta ggggtagaag aagggagtta taatggctgg 6721 agctttcttt gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa accaaaaagt tgaatatgat tacaataggc atttgcaatc 6841 agcttctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcacct 6901 gcagagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tctcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggagtggcac 7021 cagatattgg gccccaggtg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccacccac aggcccattc ccaatgttgt gcacaagagt gagggatcca cacaccaaac 7141 tgggtcatcc accggatcta tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagaa caagagactg ggtgtctgaa caacaaagac tcagcccttt 7261 catgagaggc tctcttcaaa ctgcatatgt gactcctccc tcaagctctg cctcttcagt 7321 aagctctgtt tctacagtcc cacactatgt tttagattca tggactcctt cttttaacac 7381 taagcattta cccctatttg cccatgttaa gaaaagggga caatctcaag tttaatctac 7441 cactcatggt ttgattgatt tgttttgtaa ttagtgaaat gttgattctt ttctaattcg 7501 gcat // LOCUS MW261799 7506 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS357 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261799 VERSION MW261799.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7506) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7506) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7506 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS357" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96810.1" /translation="FGSQKATNDSYSTPPPNKEETSVLTNVKVGFKKILGAVPKASRQ HGNIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHRAKEEMFSRARPVVVMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVKFKECEIVYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGDDKGTYCGAPILGLGKAPKLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPSVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYNKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96811.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLREPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7435 /gene="ORF3" CDS 6713..7435 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96812.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWSG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSISSLSTSSTRV PSSTSSSSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLDSWT PSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ctttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 gactagtgtg ctcaccaacg ttaaagttgg ttttaaaaag attctcgggg ccgttcccaa 121 ggcttcgaga cagcatggca acatacaaaa accgccgatc gttgagatcg atggtgtggc 181 catgcgtgta ccctctcccc ccccaaacgg cgaagacgcg gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgctga gtgagaggga acacaggcca gcaacagaac ccctgcctgg 361 cactatactt gagatgtggg atggtgagtt ctatcactac tccatatatg tggacaatgg 421 taaggctctt ggtgtgcaca aaccaccagc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 actcaaaggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttctgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaatgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagct aaagcccctt aatctcctaa atctgctcgc 841 atcatgtgac tggacctttg ctggtgtagt agaaacagtc attcttgcag cagagctctt 901 caatgtcttt tggactccac ctgatgtctc taacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtc cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattca cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ttacgccctg gacattctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gaaactctaa gagccattga 1201 ggacgctgtt cttgacatgg aggcaattgg caacaaccac ctcacaacat tgctcaaaga 1261 caaggacagc ctaagcgcct acatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga ttcttgcccg 1381 tattgccgct gcaagatcac tcctgcacag agccaaagag gagatgttca gtcgggcgag 1441 gcctgttgtc gtgatggtct ccgggaggcc cgggatcggg aagacttacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgaccag agggtgggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggtatggga aacacaatta aagatgccct gactctacag gagttggcag acacctgccc 1681 agtcaccctt aattgtgaca gaatcgagaa caaagggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatcttg tcaaccccgc ccccctcgat tacgtcaact ttgaggcttg 1801 ctgtaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggatttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catcacatat 1921 aaagttgtca ctagccccac agggtggttt cgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg aaaaccctca cgctgcactc gctcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaagtc tctgcattta gaaagctggc agctgacaac aagtacagtt ttgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gcgaactctg gaagacctaa aatctgccct 2221 caaaggagtc aagttcaagg agtgtgaaat agtctacaaa ggggctaagt acagggtcgc 2281 ctcggatggc tgtggcagtg tctcggtctc taagatcaag gatgttgcat cacagacagc 2341 caatgaagtg cacacagcgc tcctgagact gaggcaggcc cgggccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgct ggagcctcat ttgtggtgca 2461 taggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cccagcagtg aggtggctac agggagatgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaagggaagg ggaaggaaac acacagcctt 2641 ctctagcaag ggtcttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 agcagttgca agggccacgg aagaagactt ctgtgaagaa gaggtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaatcagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccaag 3001 tgtgtggtca cgcatcgtgc cccttggcac tggttggggt ttttgggtct cttccaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatc cagatacaca aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggagcc cctgaaggca cggtgtgttc 3241 tatcctcatc aaaagaccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttccatg aaaattcagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ttttaaaagg ggcaatgaca ttgtagtagc tggggttcac accgcagctg caaggggtgg 3481 caataccgtg atctgtgcca cgcagggagc tgacggagag gccgtccttg aaggaggaga 3541 tgacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ccaaactcag 3601 cactaagaca aagttttggc gttcctcacc cgatgcacta cccccgggaa cgtatgaacc 3661 ggcctatcta ggtggaaaag acccaagagt tgagaagggc ccatcactcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccagcgttct 3781 tgatgaggca aagaaaactg tgatgaatgt gttggagcaa accataaacc ctgccaaacc 3841 ctggtcatat tcccaagcat gcgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaatgatc actggaatgg tgagtctttc accggccctt tagccgacca 3961 agcttcaaag gcaaacctaa tgtatgaaca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aataagataa agaagaggtt 4081 gctgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttaat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 ggatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttgtct gctgccatgg aagtcatggt 4321 aaagttctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttcctt caggtgtccc 4441 atgcacctcc cagtggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtctctggt ctctccccag atgtgatcca agcccactca tgcttctctt tttacggtga 4561 tgatgagata gttagcacag acattaatct ggacccagca aaattaacct tgaaacttag 4621 ggaatatgga ttggtcccca ccagaccaga caaaactgag ggcccactag tcatcacaga 4681 gaacctccac gggttgacct tcctacgcag gcacatcaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggact caatcttaag gcagctctat tggaccagag gacccaacca 4801 tgagaatccc tatgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctac acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggtg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 gtggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaatataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgtggg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcttgtt tgcagctgtg ccccccagct tcccaaccca tggtatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tctgtcaaga gaacaaggag ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgccaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acaagaccct caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctgcag ccaaatgaga 5761 tgaccaattc aagatttcct acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggttgtcca gttccaaaat ggcaggtgtc tgcttgatgg tacacttctt ggcaccaccc 5881 ctgttagagc tgctgacatc tgcagtttta gaggggttac atcaactgaa gttgatgcaa 5941 ctgacagccc cagggtagca gggtcacata gaattatggt gcagcttagg gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttc tacacaagaa accccacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgacact actgatttcc aaaatcgtca acctaccaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattata 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagaag 6421 gtgaaattga cagtttactt ccccaggaat ggatcaccca cttctatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccatcgc gaaggattca ttacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggtcgta ggggtagaag aagggagtta taatggctgg 6721 agctttcttt gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa accaaaaagt tgaatatgat tacaataggc atttgcaatc 6841 agcttctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcacct 6901 gcagagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tctcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggagtggcac 7021 cagatattgg gccccaggtg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccacccac aggcccattc ccaatgttgt gcacaagagt gagggatcca cacaccaaac 7141 tgggtcatcc accggatcta tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagaa caagagactg ggtgtctgaa caacaaagac tcagcccttt 7261 catgagaggc tctcttcaaa ctgcatatgt gactcctccc tcaagctctg cctcttcagt 7321 aagctctgtt tctacagtcc cacactatgt tttagattca tggactcctt cttttaacac 7381 taagcattta cccctatttg cccatgttaa gaaaagggga caatctcaag tttaatctac 7441 cactcatggt ttgattgatt tgttttgtaa ttagtgaaat gttgattctt ttctaattcg 7501 gcattt // LOCUS MW261800 7515 bp RNA linear VRL 13-APR-2022 DEFINITION Norovirus GIX isolate DS335 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MW261800 VERSION MW261800.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A.U.A., Ford-Siltz,L.A., Green,K.Y., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H. and Parra,G.I. TITLE Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints JOURNAL PLoS Pathog 17 (7), e1009744 (2021) PUBMED 34255807 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7515) AUTHORS Tohma,K., Lepore,C.J., Martinez,M., Degiuseppe,J.I., Khamrin,P., Saito,M., Mayta,H., Nwaba,A., Ford-Siltz,L.A., Galeano,M.E., Zimic,M., Stupka,J.A., Gilman,R.H., Maneekarn,N., Ushijima,H., Green,K.Y. and Parra,G.I. TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) CBER/OVRR/DVP/LHV, U.S. Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA COMMENT ##Assembly-Data-START## Assembly Method :: High-performance Integrated Virtual Environment (HIVE) v. 2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="DS335" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="Saudi Arabia" /collection_date="1990" /note="genotype: GIX.1 [GII.P15]" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QPC96813.1" /translation="LGSQKATNDSYSTPPPNKEEASVLTNVKVGFKKILGAVPKASRQ HGNTQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLSTVENESEHSPYT VPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPPAAISLATIDLT PISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLDLNDSWLNRRSI NRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKDLLGKLKPLNLL NLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQGPEDLAVELVP VVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAE METLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKARKLSTKSSSPDI VGTINAILARIAAARSLLHKAKEEMFSRARPVVIMVSGRPGIGKTYLARQLAKSIANS MSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQELADTCPVTLNCD RIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAPDIEKVKKDFPG QPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMRTLTLHSLTARVMGLVCER KDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKNVRTLEDLKSAL KGVMFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTALLRLRQARARYY ISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPSSEVATGRWEIE PKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGKYSIEEYLQDRD RFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVTGSEIRKRRPDD FQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPK GVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGTVCSILIKRPTG EMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDCGCPYIFKRGND IVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGLGKAPNLSTKTK FWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPRGKPPNPNVLDE AKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWNGESFTGPLADQ ASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCARAFGG LMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDSTQQRCILSAAM EVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNSIAHWIIT LSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLREYGLVPTRPDKT EGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPH SQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLS TWEGDRNLAPDGVNEDGVE" mat_peptide <1..970 /gene="ORF1" /product="p48" mat_peptide 971..2068 /gene="ORF1" /product="NTPase" mat_peptide 2069..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6713 /gene="ORF2" CDS 5046..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QPC96814.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6713..7444 /gene="ORF3" CDS 6713..7444 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QPC96815.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" ORIGIN 1 ccttggcagc cagaaagcta ccaatgacag ctatagcaca ccccctccca acaaggagga 61 ggctagtgtg ctcaccaacg ttaaagttgg ttttaaaaag atcctcgggg ccgttcctaa 121 ggcttcgaga cagcatggca acacgcaaaa accgccgatc gtcgagatcg atggtgtggc 181 catgcgtgtg ccctctcccc ccccaaacgg tgaggacgca gttcactttg tgaaggaaac 241 ggagaccatc aagggattgc cagatttgtc caccgtggaa aacgaatctg aacactcccc 301 atacacagtc ccaccgttga gtgagaggga acacaggcca gcaacagagc ccttgcctgg 361 cactatactt gagatgtggg atggtgagtt ctaccactac tccatatatg tggacaacgg 421 caaggctctt ggtgtgcaca aaccaccggc agcaatcagc ctagcaacga tagatttaac 481 acctatatcg ttgtattgga gaccggtgta cacaccgccg taccttgttc acccagagac 541 acttaagggg ctggctggtg aaaagtttcc ctacacagct ttcagcaaca actgctacaa 601 cttttgttgc tgggttctgg acctcaatga ctcatggttg aaccggagat ccataaatag 661 gacaactgga ttcttcaaac cctaccaaac ctggaacagg aaacccctcc caactgtgga 721 tgatggtaag atcaagaagg tcgcaaacgc agttctgtgc gccctaggat cacttttctc 781 aaaacccatt aaggacctcc ttgggaagtt aaagcccctc aacctcctaa atctgctcgc 841 gtcatgcgac tggacctttg ctggtgtagt ggaaacagtc attcttgcag cagagctctt 901 taacgtcttt tggactccac ctgatgtctc caacttcatt gcctccataa ttggtgactt 961 tgagatgcaa ggaccagaag accttgctgt ggagcttgtt cccgttgtca tgggaggcat 1021 tggtatggtg ttaggattta cagctgagaa gatagggcgc atgttatcat ctgcagcatc 1081 cactcttaga gcttgtaagg accttggcaa ttacgccctg gacatcctaa aactggtcat 1141 gaaatggttc ttccctaaga aggaggagaa ggccgagatg gaaaccctaa gagccattga 1201 ggatgccgtt cttgacatgg aggcaattgg caacaaccac cttacaacat tgcttaaaga 1261 caaggacagc ctaaacgcct atatgaagac cttagacatg gaggaggaaa aggccaggaa 1321 actctcaacc aaatcatcat cacccgacat tgttggcacc atcaatgcga tccttgctcg 1381 cattgccgct gcaagatcac tcctgcacaa agccaaagag gaaatgttca gtcgagcgag 1441 gcctgttgtc ataatggttt ccgggagacc cgggatcggg aagacatacc tggctagaca 1501 acttgctaag tcaattgcaa acagcatgag tggtgatcag agggtaggac ttgtcccccg 1561 caatggggtt gaccactggg atgcctatag gggtgagaga gtcgtcctat gggatgacta 1621 tggcatggga aacacaatta aagatgccct gactctacag gagttagcag acacctgccc 1681 agttaccctc aactgtgaca gaatcgagaa caaggggaag atgtttgaca gtgatgtcat 1741 cataattaca accaatcttg tcaatcctgc tccccttgat tatgttaact ttgaggcttg 1801 ctgcaggcga attgacttcc ttgtctatgc cgaggcacca gacattgaga aagtcaaaaa 1861 ggatttccct ggacaaccag acatgtggcg tgaccatttc aaagctgatt catctcacat 1921 aaagttgtca ctagccccac agggtggttt tgacaaaaat ggaaacaccc ctcatgggaa 1981 gggcaccatg agaaccctca cgctgcactc actcactgca cgtgtgatgg gcttagtgtg 2041 tgagagaaag gatgagttcc aattacaggg ggacgaactg caggtttaca actttgacac 2101 aaacaaggtc tctgcattca gaaagctggc agctgacaac aagtacagtt tcgtggagac 2161 aatgaaagtt ggtgcggtcc tcaagaatgt gagaaccctg gaagacctaa aatctgccct 2221 caaaggagtc atgttcaaag agtgtgaaat aatttacaaa ggggctaagt acagggtcgc 2281 ctcggacggc tgtggcagtg tctcggtctc taagatcaag gatgttgcgt cacagacagc 2341 caatgaagtg cacacagcgc tactgagact gaggcaagcc cgagccagat actacatcag 2401 ctgcttccaa gaccttatct acaccctgat tcaggttgcc ggagcctcat tcgtggtgca 2461 caggatctca aagagattct cctgggaccg ttggattaaa cccagtgaga gccctcaaga 2521 ggaagaacaa cctagcagtg aggtggccac aggaaggtgg gaaattgagc caaaggacac 2581 agaccctgaa ggtaaaaagg gtaaaaacaa gaaggggagg ggaaggaaac acacagcttt 2641 ctctagcaag ggccttagtg atgaagagta cgatgagttc aagagaatca gagaggagaa 2701 gaacggcaag tactctatag aagaatacct ccaggaccgt gacagatttt atgaggaagt 2761 ggcagttgca agagccacgg aagaggactt ctgtgaggaa gaagtggcga agatcaggca 2821 gaggattttc agacccacaa agaagcagag gaaggaggaa cggggcgtcc ttgggctagt 2881 caccggttca gaaattagga agagaagacc agatgacttc cagcctaaag gtaatttgtg 2941 ggctgatgac accaggagcg tggactacaa cgagaagctg gaatttgaag cccctccgag 3001 tgtgtggtca cgcatcgtac cccttggcac tggttggggt ttttgggtct cctctaacct 3061 cctcataaca acaacgcacg tcctgccaaa aggagtgaga gagctgttcg gagttgacat 3121 caaacaaatt cagatacata aatcaggtga gttttgcagg ttcaggtttc caagaccgat 3181 cagaccagat gtcacaggcc tcatccttga agaaggtgcc cctgaaggca cggtgtgttc 3241 tattctcatc aagaggccga ctggagagat gataccgctc gcagtgagga tgggcaccca 3301 cgcttctatg aaaatccagg gcagaacagt tggtggtcaa atgggcatgt tgctcacagg 3361 ggcaaatgcc aaaaacatgg atttgggcac gaaccctggt gactgtggct gcccgtacat 3421 ctttaaaagg ggcaatgaca ttgtagtagc tggggttcac actgcagctg caagaggtgg 3481 caatactgtg atctgtgcca cgcagggagc tgacggagaa gctgtccttg aaggaggaga 3541 ggacaaagga acatactgtg gtgccccaat acttggactt gggaaggccc ctaatttaag 3601 caccaagaca aagttttggc gttcctcgcc tgatgcacta cctccgggaa cgtatgaacc 3661 agcctatcta ggtggaaaag acccaagagt tgagaagggc ccatctctcc agcaggttat 3721 gagagaacaa cttaaaccat tcaccgaacc cagaggaaaa ccgccaaatc ccaacgttct 3781 tgacgaggcg aagaaaactg tgatgaacgt gttggagcaa accataaacc ctgccaagcc 3841 ctggtcatat tcccaagcat gtgcttcact tgacaaaacg acttcaagtg gtagcccaca 3901 ccacctgagg aagaacgacc actggaatgg tgagtctttc actggccctt tggcagacca 3961 agcttcaaag gcaaacctga tgtatgagca ggcaaaacac gtgagccccg tttacactgc 4021 agccctcaaa gatgaactag tcaagactga caagatttac aagaagataa agaagaggtt 4081 actgtggggt tctgacctgg gcaccatggt caggtgtgcc agagcctttg gtgggttgat 4141 ggacagcatg aaagagagtt gtgtgatgtt gccctgcaga gttggaatga acatgaatga 4201 agatgggcca atcatttttg acaaacatgc aaaatataaa taccactatg atgcagatta 4261 ctccagatgg gattccacac agcaaagatg catcttatct gctgccatgg aagttatggt 4321 aaaattctca gctgaaccgg aattggcaca agtggttgct gaagacttac tcgccccgag 4381 ccaactcgac gtgggcgatt ttgtggtgtc agttcaagaa ggccttccct caggtgtccc 4441 atgtacctcc caatggaact ctatagcaca ctggatcatt acccttagtg caatggcaga 4501 agtttctggt ctctccccag atgtgatcca agcccattca tgcttttctt tttacggtga 4561 tgatgagata gttagcacag acatcaatct ggacccagca aaattaacct taaaacttag 4621 ggaatatgga ctggtcccca ccagaccaga caaaactgag ggcccactag tcatcactga 4681 gaacctccac gggttgacct tcctacgcag gcacattaca cgagaccctg ctggatggtt 4741 tggtaaatta gatcaggatt caatcttaag gcagctttac tggaccagag gacccaatca 4801 tgagaatccc tacgagagca tggttccaca ctcacagcgc gcaacccagc taatggcgct 4861 gttgggtgag gcatcgctgc acggtcccca gttttacaag aaagttagca agatggttat 4921 caatgagatc aagagtggcg gtctggaatt ttacgtgccc agacaggagg ccatgttcag 4981 atggatgaga ttctctgacc tcagcacgtg ggagggcgat cgcaatctgg ctcccgacgg 5041 tgtgaatgag gatggcgtcg agtgacgcgc ccgtttctgg caccgatggt gcggcaggac 5101 tcgtcccaga gagtcaacaa gaagtcttgc ctttagagcc cgtcgcggga gttcagctgg 5161 ctgctcccgt tgcagggcaa agtaacataa ttgacccctg gattagaatg aattttgtgc 5221 aagccccggc cggtgagttc actgtgtccc ctcggaacgc accgggtgag gtacttattg 5281 atttagaatt aggaccagaa ttaaatccct atctcaatca ccttgcaaga atgtataatg 5341 ggtatgttgg aggaatggag gtggaagttg tccttgccgg gaatgcgttc acggcgggta 5401 agatcctgtt tgcagctgtg ccccccagct tcccaaccca tggcatctct gcagcacagg 5461 caactatgct accacatgtg attgtggatg tcaggcagct ggagcctgtc cggctccccc 5521 tccctgacgt caggaatgtg atgttccatt tttgtcaaga gaataaagaa ccgcgtatga 5581 gaattgtggc aatattgtac acccccctcc gtgctaacgg tgcgggtgat gatgttttca 5641 ctgtctcatg tcgtgtgcta acgagacctt caccagattt tgattttatt ttcttggtcc 5701 ccccctctgt agagagtaag ttgaaacagt ttaccctccc aaacctacag ccaaatgaga 5761 tgaccaattc aagatttccc acaggtatca cacagcttta caccagtcca aacaccaatt 5821 tggtcgtcca gttccagaat ggcaggtgtc tgcttgatgg cacacttctt ggcaccaccc 5881 ctgtcagagc tgctgacatc tgcagtttta gaggggttac atcaaccgaa gttgatgcaa 5941 ctgacagccc cagggtggca gggtcacata gaattatggt gcagcttaag gagccagatg 6001 gagaggagtt ttcacccaca ggtcccaacc ctgcccctgt tggcacccca gactttcaag 6061 cagccatatt tggcactctc agtcaaagaa acactggcgg agctgggcag aattccaaca 6121 gagcccactt cgcatacttt tacacaagaa accctacatt tgcaccaggc atagggactg 6181 ttgtattttc ttttgatacc actgatttcc aaaatcgtca acctactaaa ttttctcctt 6241 ctggtgtgtt tgatgatgat tcttctgaac cttttaatca gttctccctg ccatattaca 6301 atggatcact cggtgcagtg gacgctggaa aactggctcc gcctgtggca cccaattatc 6361 caggtgagca gattctttat tttagaggga atataccttt caaaggtggg tatggagagg 6421 gtgaaattga cagcttgctt ccccaggaat ggattactca cttttatgca gagcaggccc 6481 ccacacaagg tgacgcagcc ctgctgcgct actacaaccc tgacactggt agagtcctct 6541 ttgagtgcaa actccaccgc gagggattca tcacaatcaa ttacacggga tccaatgctc 6601 ttgctgtacc agtcaatgga gtcttcaggt ttgagggctg ggttaacaaa ttctacacac 6661 tgacccccat gggaaatggc aatggccgca ggggtagaag aagggagtta taatggctgg 6721 agctttcttc gcaggtcttg cttctgatgt tcttggcagc ggtttgtctt ctcttattgg 6781 tgccggtgcc aatgctataa atcaaaaagt tgagtatgat tacaataggc atttgcaatc 6841 agcatctttc caacatgaca aggacatgct tagctcacag gtggaagcca caaagcatct 6901 gcaaagggaa atgatggcca tcaaggaagg catgctgctt aagggcgggt tttcccccac 6961 tgatgcagca aggggggctg tcaacgcccc tatgacacaa atcttggatt ggaatggcac 7021 cagatattgg gccccaggcg caatgaaaac tacggcctat tcaggccgtt ttgtcagcca 7081 atccactcac aggcctattc ccaatgttgt gcataagagt gagggatcca cacaccaaac 7141 tgggtcatct accggatctg tctcttctct ttccacatca tccacccgtg ttccatcatc 7201 tacatcctca tctagtagta cttctagaac aagagactgg gtgtcagaac aacaaagact 7261 cagccctttc atgagaggct ctcttcaaac tgcatatgtg actcctcctt caagctctgc 7321 ctcttcagta agctctgttt ctacagtccc acactatgtt ttagattcat ggactccttc 7381 ttttaacact aagcatttac cactgtttgc ccatgttaag aaaaggggac aatctcaagt 7441 ttaatctacc actcatggtt tgattgattt gttttgtaat tagtgaaatg ttgattcttt 7501 tctaattcgg cattt // LOCUS MN462922 7542 bp RNA linear VRL 28-SEP-2019 DEFINITION Norovirus GIX isolate YIYANG/HUNAN/CHINA/GII.P15-GIX.1/2018, complete genome. ACCESSION MN462922 VERSION MN462922.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7542) AUTHORS Zhou,S., Zhen,W., Jin,M. and Ma,X. TITLE Direct Submission JOURNAL Submitted (16-SEP-2019) CDC China, Changbai Road, Beijing 155, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7542 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="YIYANG/HUNAN/CHINA/GII.P15-GIX.1/2018" /isolation_source="annal swab" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China" /collection_date="13-Mar-2018" /note="genotype: GII.P15-GIX.1" gene 5..5101 /gene="ORF1" CDS 5..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QEQ26599.1" /translation="MRMASSDVVTALGSQRATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSVQKPPIVEIDGVAMRVPSPPPNGEDAVRFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL LRLRQARARYYTSCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS SEVATGKWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGILGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6749 /gene="ORF2" CDS 5082..6749 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QEQ26597.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSSRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7471 /gene="ORF3" CDS 6749..7471 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QEQ26598.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRV PPSTSSSSRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHHVLDSWT PSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 gtgaatgagg atggcgtcga gtgacgtcgt tactgccctt ggcagccaga gagctaccaa 61 tgacagctat agcacacccc cccccaacaa ggaggaggct agtgtgcttg ccaacgtcaa 121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcgt 181 acaaaaaccg ccgatcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc 241 aaacggtgag gacgcagtcc gcttcgtgaa ggaaacggag accatcaagg gactaccaga 301 tttgtccacc gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga 361 gagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg 421 tgagttctat cactactcca tatacgtgga caatggcaag gcccttggtg ttcacaaacc 481 accagcagca attagcctag caacgataga tttgacacct atatcgttgt actggagacc 541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa 601 gtttccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattca tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta 721 tcaatcctgg aataggaaac cccttccaac tgtggatgat ggcaagatca agaaggtcgc 781 gaatgcagtt ctgtgcgccc taggatcact tttctccaag cccattaaag acctccttgg 841 taaattgaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg 901 tgtggtggag acagttattc ttgcagcaga gctcttcaat gtcttttgga ctccacctga 961 tgtctccaac ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct 1021 tgctgtggag cttgttcctg ttatcatggg aggcattggt atggtgttgg ggttcacagc 1081 tgagaagata gggcgtatgt tatcatctgc agcatccact ctcagggctt gtaaggacct 1141 tggcaattac gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga 1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctgtacttg acatggaggc 1261 aattggaaac aaccacctca caacactgct caaagacaaa gatagcttga gcgcctacat 1321 gaagacccta gacatggagg aggagaaggc taggaggctc tccactaaat catcatcacc 1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct 1441 acacaaagcc aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg 1501 aagacccggc atcgggaaga catacctggc tagacagctt gccaaatcga ttgcaaacag 1561 catgagtggt gatcagagag taggactcgt cccccgcaat ggggttgacc actgggatgc 1621 ttataggggt gaaagagttg tcctatggga tgactatggc atgggaaata caatcaaaga 1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat 1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgttaa 1801 ccccgctccc ctcgattatg tcaattttga ggcttgctgt aggcgaattg acttccttgt 1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat 1921 gtggcgtgat cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg 1981 tggttttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct 2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact 2101 acagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa 2161 actagcagct gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa 2221 gaacgtaaaa actctggaag atctgaagtc tgccctcaag ggagtcaaat tcaaagagtg 2281 tgaaataatt tacaaggggg ccaagtatag agtcgcctcg gatggctgtg gcagtgtctc 2341 agtttccaag atcaaggatg ttgtgtcgca gacagccaat gaagtgcaca cagcgctcct 2401 gagattgagg caagcccggg ccaggtatta caccagctgc ttccaagacc tcatatacac 2461 cctaatacag gttgctggag cctcatttgt ggtgcatagg atctcaaaga gattctcatg 2521 ggaccgctgg atcaagccca gtgatagccc tcaggaggaa gaacaaccca gcagtgaggt 2581 ggccacaggg aaatgggaaa ttgagccaaa agacacagac cctgaaggca aaaagggtaa 2641 aaataagaaa ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga 2701 agagtatgat gagttcaaaa gaatcagaga ggaaaagaac ggcaaatact ccatagaaga 2761 atacctccag gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga 2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa 2881 gcagaggaag gaggagcggg gcatcctagg gctggtcact ggttcagaaa tcaggaagag 2941 aagaccagat gactttcagc ctaaaggcaa cttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgaa aagctggagt ttgaggcccc tccaagcgtg tggtcacgta tcgtacccct 3061 cggcactggc tggggtttct gggtctcctc caacctcctc ataacaacaa cacacgtcct 3121 gccaaaagga ttgaaggagc tgttcggagt tgacatcaag caagtccaga tacacaagtc 3181 aggtgagttc tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggggcccctg aaggcacggt gtgttccatc cttgtcaaaa gaccgactgg 3301 agagatgata ccacttgcag tgaggatggg tacccacgct tccatgaaaa tccagggtag 3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt 3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt 3481 ggtagctggg gttcacactg cagctgcgcg gggtggcaac actgtgatct gtgccacgca 3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc 3601 cccaatactt ggacttggga aggcccccaa actcagtacc aagacaaagt tctggcgatc 3661 ctcccctgat gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaggaccc 3721 aagggttgag aagggcccgt cgcttcagca ggtcatgaga gaacaactta aacctttcac 3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat 3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc 3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg 3961 gaatggtgaa tctttcaccg gtcctttggc cgaccaagct tcaaaagcaa acctaatgta 4021 tgaacaggca aaacacatga gccccgttta cactgcagcc ctcaaagatg agctggtcaa 4081 gactgataag atttacaaga aaataaagaa gaggctgctg tggggttctg atctgggtac 4141 catggtcagg tgtgccaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt 4201 gatgttaccc tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgataa 4261 acatgcaaaa tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca 4321 aaggagcatc ttatctgctg ccatggaggt tatggtgaag ttctcagctg aaccagagct 4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgattttgt 4441 ggtgtcagtc caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat 4501 agcacattgg atcattaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt 4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat 4621 caacttagac ccagcaaagc taaccttaaa actcagggaa tatgggttgg tccccaccag 4681 accagacaaa actgaaggcc cattagtcat cacagaggac ctccatgggt tgaccttcct 4741 acgcagacac atcacacgag atcctgctgg gtggtttgga aaattagatc aggattcaat 4801 cttaaggcaa ctctactgga ctagaggacc caaccatgag aacccctacg aatgcatggt 4861 cccacactca cagcgcgcaa cccagttaat ggcgctgttg ggtgaggcat cgttgcacgg 4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gaaattaaga gtggtggtct 4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcaggagttc agctggctgc tcccgtagca gggcaaagta 5221 atataattga cccctggatt agaatgaatt ttgtacaagc cccggccggt gagttcactg 5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt ggaattagga ccagagttaa 5341 atccctatct caatcacctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc 5461 ccagcttccc aacccatggc atttctgcag cacaggctac tatgttacca catgtgattg 5521 tggatgtcag gcagctggag cctgttcggc tccctcttcc tgatgtcagg aatgtgatgt 5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggtgcg ggtgatgatg ttttcactgt ctcatgtcgt gtgctaacaa 5701 ggccctcacc agattttgat tttattttct tggttccccc ctctgtagag agtaagctga 5761 aacagttcac ccttccaaac ctgcagccaa atgaaatgac caactcaaga ttccccactg 5821 gtatcacaca actctacacc agtccaaata ccaatttggt tgtccagttc caaaatggca 5881 ggtgtctgct tgatggcaca cttctcggca ccacccctgt tagagctgct gacatctgca 5941 gtttcagagg agtcacctca accgaagttg atgcaactga cagttccaga gtggcagggt 6001 cgcatagaat tatggtgcag ctcaaggagc cagatggaga ggagttttca cctacaggtc 6061 ccaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc 6121 aaagaaacac tggcggggct gggcagaatt ccaacagagc ccacttcgca tatttttaca 6181 ctagaaaccc cacatttgca ccaggcatag ggacagttgt gttttctttt gatactactg 6241 attttcagaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt taatcaattt tctctaccat attataatgg atcactcggt gcagtagatg 6361 ctgggaagct agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta 6421 gagggaatat tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgcttcccc 6481 aggaatggat cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc 6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg 6601 gattcatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct 6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg 6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctc ggcagcggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaatca 6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga 6901 tatgctcaac tcacaggtgg aagccacaaa gcacttacaa agggagatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa 7021 cgcccctatg acacaaatct tggattggaa tggcaccaga tactgggccc cgggtgcgat 7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcataggc ctattcccaa 7141 tgttgtgcac aagagtgatg gacccataca ccaaactggg tcaaccacag ggtccatttc 7201 ttctctctcc acatcatcca cccgtgttcc accatccaca tcctcatcta gtagaacaag 7261 ggactgggtg tctgaacagc aaagactcag ccctttcatg agaggctctc ttcacactgc 7321 atatgtgact cctccctcaa gctctgcctc ttcagtaagc tctgtttcta cagtcccaca 7381 ccatgtttta gattcatgga ccccttcttt taataccaaa catttacctt tgtttgctca 7441 tgttaggaaa aggggacaat ctcaagttta atctaccact catggtttga ttgatttgtt 7501 ttgtaattag tgaaatgttg attcttttct aattcggcat tt // LOCUS MN473468 7548 bp RNA linear VRL 28-SEP-2019 DEFINITION Norovirus GIX isolate xinghuang/GII.P15/China/2018, complete genome. ACCESSION MN473468 VERSION MN473468.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7548) AUTHORS Zhou,S., Zhen,W., Jin,M. and Ma,X. TITLE Direct Submission JOURNAL Submitted (17-SEP-2019) china, CDC, changbai road, beijing, beijing 155, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7548 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="xinghuang/GII.P15/China/2018" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China" /collection_date="14-May-2018" /note="genotype: GII.P15-GIX.1" gene 5..5101 /gene="ORF1" CDS 5..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QEQ50322.1" /translation="MRMASSDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSVQKPPIVEIDGVAMRVPSPPPNGEDAVRFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTANEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSDSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGILGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2629 /gene="ORF1" /product="p22" mat_peptide 2630..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6749 /gene="ORF2" CDS 5082..6749 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QEQ50323.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSSRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7477 /gene="ORF3" CDS 6749..7477 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QEQ50324.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFSQSTHRPIPNVVHKSDGPIHQTGSTTGSISSLSTSSTRVP SPTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHHVLDS WTPSFNTKHLPLFVHVRKRGQSQV" ORIGIN 1 gtgaatgagg atggcgtcga gtgacgtcgt tactgccctt ggcagccaga aagctaccaa 61 tgacagctat agcacacccc cccccaacaa ggaggaggct agtgtgcttg ccaacgtcaa 121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcgt 181 acaaaaaccg ccgatcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc 241 aaacggtgag gacgcagtcc gcttcgtgaa ggaaacggag accatcaagg gactaccaga 301 tttgtccacc gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga 361 gagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg 421 tgagttctat cactactcca tatacgtgga caatggcaag gcccttggtg ttcacaaacc 481 accagcagca attagcctag caacgataga tttgacacct atatcgttgt actggagacc 541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa 601 gtttccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattca tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta 721 tcaatcctgg aataggaaac cccttccaac tgtggatgat ggcaagatca agaaggtcgc 781 gaatgcagtt ctgtgcgccc taggatcact tttctccaag cccattaaag acctccttgg 841 taaattgaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga cctttgctgg 901 tgtggtggag acagttattc ttgcagcaga gctcttcaat gtcttttgga ctccacctga 961 tgtctccaac ttcattgctt ccataattgg cgacttcgag atgcaaggac cagaggatct 1021 tgctgtggag cttgttcctg ttatcatggg aggcattggt atggtgttgg ggttcacagc 1081 tgagaagata gggcgtatgt tatcatctgc agcatccact ctcagggctt gtaaggacct 1141 tggcaattac gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga 1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctgtacttg acatggaggc 1261 aattggaaac aaccacctca caacactgct caaagacaaa gatagcttga gcgcctacat 1321 gaagacccta gacatggagg aggagaaggc taggaggctc tccactaaat catcatcacc 1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct 1441 acacaaagcc aaagaggaaa tgttcagtcg agcgaggcct gttgtcgtta tggtgtctgg 1501 aagacccggc atcgggaaga catacctggc tagacaactt gccaaatcga ttgcaaacag 1561 catgagtggt gatcagagag taggactcgt cccccgcaat ggggttgacc actgggatgc 1621 ttataggggt gaaagagttg tcctatggga tgactatggc atgggaaata caatcaaaga 1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtt accctcaact gtgacaggat 1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgttaa 1801 ccccgctccc ctcgattatg tcaattttga ggcttgctgt aggcgaattg acttccttgt 1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccctggac aacctgacat 1921 gtggcgtgat cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg 1981 tggttttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct 2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact 2101 acagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa 2161 actagcagct gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa 2221 gaacgtaaaa accctggaag atctgaagtc tgccctcaag ggagtcaaat tcaaagagtg 2281 tgaaataatt tacaaggggg ccaagtatag agtcgcctcg gatggctgtg gcagtgtctc 2341 agtttccaag atcaaggatg ttgtgtcgca gacagccaat gaagtgcaca cagcgctcct 2401 gagattgagg caagcccggg ccaggtatta catcagctgc ttccaagacc tcatatacac 2461 cctaatacag gttgctggag cctcatttgt ggtgcatagg atctcaaaga gattctcatg 2521 ggaccgctgg atcaagccca gtgatagccc tcaggaggaa gaacaaccca gcagtgaggt 2581 ggccacaggg agatgggaaa ttgagccaaa agacacagac cctgaaggca aaaagggtaa 2641 aaataagaaa ggaaggggaa ggaaacacac ggctttctct agtaagggtc ttagtgatga 2701 agagtatgat gagttcaaaa gaatcagaga ggaaaagaat ggcaaatact ccatagaaga 2761 atacctccag gaccgtgata gattttacga ggaagtggca gttgcaaggg caacggaaga 2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa 2881 gcagaggaag gaggagcggg gcatcctagg gctggtcact ggttcagaaa tcaggaagag 2941 aagaccagat gactttcagc ctaaaggcaa cttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgaa aagctggagt ttgaggcccc tccaagcgtg tggtcacgta tcgtacccct 3061 cggcactggc tggggtttct gggtctcctc caacctcctc ataacaacaa cacacgtcct 3121 gccaaaagga ttgaaggagc tgtttggggt tgacatcaaa caagtccaga tacacaagtc 3181 aggtgagttc tgcaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggggcccctg aaggcacggt gtgttccatc cttgtcaaaa gaccgactgg 3301 agagatgata ccacttgcag tgaggatggg tacccacgct tccatgaaaa tccagggtag 3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt 3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt 3481 ggtagctggg gttcacactg cagctgcgcg gggtggcaac actgtgatct gtgccacgca 3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaagggacgt actgtggtgc 3601 cccaatactt ggacttggga aggcccccaa actcagtacc aagacaaagt tctggcgatc 3661 ctcccctgat gcgcttcccc cgggaacgta tgagccagca tacctaggtg gaaaggaccc 3721 aagggttgag aagggcccgt cgcttcagca ggtcatgaga gaacaactta aacctttcac 3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat 3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcgtgtgc 3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg 3961 gaatggtgaa tctttcaccg gtcctttggc cgaccaagct tcaaaagcaa acctaatgta 4021 tgaacaggca aaacacatga gccccgttta cactgcagcc ctcaaagatg agctggtcaa 4081 gactgataag atttacaaga aaataaagaa gaggctgctg tggggttctg atctgggtac 4141 catggtcagg tgtgccaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt 4201 gatgttaccc tgcagagttg gcatgaacat gaatgaagat ggaccaatca tttttgataa 4261 acatgcaaaa tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca 4321 aaggagcatc ttatctgctg ccatggaggt tatggtgaag ttctcagctg aaccagagct 4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagtcaa ctcgacgtgg gcgattttgt 4441 ggtgtcagtc caagaaggtc tcccctcagg tgttccgtgc acttcccaat ggaactccat 4501 agcacattgg atcattaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt 4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat 4621 caacttagac ccagcaaagc taaccttaaa actcagggaa tatgggttgg tccccaccag 4681 accagacaaa actgaaggcc cattagtcat cacagaggac ctccatgggt tgaccttcct 4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat 4801 cttaaggcaa ctctactgga ctagaggacc caaccatgag aacccctacg aatgcatggt 4861 cccacactca cagcgcgcaa cccagttaat ggcgctgttg ggtgaggcat cgttgcacgg 4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gaaattaaga gtggtggtct 4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcaggagttc agctggctgc tcccgtagca gggcaaagta 5221 atataattga cccctggatt agaatgaatt ttgtacaagc cccggccggt gagttcactg 5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt ggaattagga ccagagttaa 5341 atccctatct caaccacctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gctgtgcccc 5461 ccagcttccc aacccatggc atttctgcag cacaggctac tatgttacca catgtgattg 5521 tggatgtcag gcagctggag cctgttcggc tccctcttcc tgatgtcagg aatgtgatgt 5581 tccatttctg ccaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggtgcg ggtgatgatg ttttcactgt ctcatgtcgt gtgctaacaa 5701 ggccctcacc agattttgat tttattttct tggttccccc ctctgtagag agtaagctga 5761 aacagtttac ccttccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg 5821 gtatcacaca actctacacc agtccaaata ccaatttggt tgtccagttc caaaatggca 5881 gatgtctgct tgatggcaca cttctcggca ccacccctgt tagagctgct gacatctgca 5941 gtttcagagg agtcacctca actgaagttg atgcaactga cagttccaga gtggcagggt 6001 cgcatagaat tatggtgcag ctcaaggagc cagatggaga ggagttttca cctacaggtc 6061 ccaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagtc 6121 aaagaaacac tggcggggct gggcagaatt ccaacagagc ccacttcgca tatttttaca 6181 ctagaaaccc cacatttgca ccaggcatag ggacagttgt gttttctttt gatactactg 6241 attttcagaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt taatcaattt tctctaccat attataatgg atcactcggt gcagtagatg 6361 ctgggaagct agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta 6421 gagggaatat tcccttcaag ggtgggtatg gagagggtga aattgatagc ttgctccccc 6481 aggaatggat cacccacttt tatgcagagc aggctcctac acaaggtgac gcagccctgc 6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg 6601 gattcatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct 6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg 6721 gccgcagggg taggagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctc ggcagcggtt tgtcttcact tatcggtgcc ggtgccaatg ccataaatca 6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga 6901 tatgctcaac tcacaggtgg aagccacaaa gcacttacaa agggagatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa 7021 cgcccctatg acacaaatct tggattggaa tggcaccaga tactgggccc cgggtgcgat 7081 gaaaaccacg gcttactcag gccgttttag ccaatccact cataggccta ttcccaatgt 7141 tgtgcacaag agtgatggac ccatacacca aactgggtca accacagggt ccatttcttc 7201 tctctccaca tcatccaccc gtgttccatc acccacatcc tcatctagta gtgcttctag 7261 aacaagggac tgggtgtctg aacagcaaag actcagccct ttcatgagag gctctcttca 7321 cactgcatat gtgactcctc cctcaagctc tgcctcttca gtaagctctg tttctacagt 7381 cccacaccat gttttagatt catggacccc ttcttttaac accaaacatc tacctttgtt 7441 tgttcatgtt aggaaaaggg gacaatctca agtttaatct accactcatg gtttgattga 7501 tttgttttgt aattagtgaa atgttgattc ttttctaatt cggcattt //