LOCUS JQ613567 7527 bp RNA linear VRL 30-APR-2014 DEFINITION Norovirus Hu/GIV.1/LakeMacquarie/NSW268O/2010/AU, complete genome. ACCESSION JQ613567 VERSION JQ613567.1 KEYWORDS . SOURCE Norovirus Hu/GIV.1/LakeMacquarie/NSW268O/2010/AU ORGANISM Norovirus Hu/GIV.1/LakeMacquarie/NSW268O/2010/AU Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7527) AUTHORS Eden,J.S., Lim,K.L. and White,P.A. TITLE Complete Genome of the Human Norovirus GIV.1 Strain Lake Macquarie Virus JOURNAL J. Virol. 86 (18), 10251-10252 (2012) PUBMED 22923808 REFERENCE 2 (bases 1 to 7527) AUTHORS Eden,J.S., Hewitt,J., Lim,K.L., Boni,M.F., Merif,J., Greening,G., Ratcliff,R.M., Holmes,E.C., Tanaka,M.M., Rawlinson,W.D. and White,P.A. TITLE The emergence and evolution of the novel epidemic norovirus GII.4 variant Sydney 2012 JOURNAL Virology 450-451, 106-113 (2014) PUBMED 24503072 REFERENCE 3 (bases 1 to 7527) AUTHORS Eden,J.-S., Lim,K.-L. and White,P.A. TITLE Direct Submission JOURNAL Submitted (01-FEB-2012) School of Biotechnology and Biomolecular Sciences, University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia FEATURES Location/Qualifiers source 1..7527 /organism="Norovirus Hu/GIV.1/LakeMacquarie/NSW268O/2010/AU" /mol_type="genomic RNA" /strain="Hu/GIV.1/LakeMacquarie/NSW268O/2010/AU" /host="Homo sapiens" /db_xref="taxon:1183318" /country="Australia" /collection_date="Dec-2010" /note="genotype: GIV.1" 5'UTR 1..4 CDS 5..5068 /note="ORF1" /codon_start=1 /product="non-structural polyprotein" /protein_id="AFJ21375.1" /translation="MKMASNDASVANSNSKTIAANNTTTPKQGGVFANMKIGLKKVLE PKSETPTVRPKDVGKPGGTSPPDDPPGVTIKYDAQSDTIEGLPNLSTVPQPEARQVKC VPPMAEREVKNAAEPQTGSLLEMYDGSFYHYAIYIENGLVAGINRPSKALTTATVDVE PIGLWWRVVYTPPFSVSTSALYHLQGEKFPYNAFDNNCYNFCCQVLELDDCWMRRKFV QRTTGFFDPYQRWNPKPSQYVADSKLERVGDALLTALGALFSKPIKNIIGKLKPLNFL NLLSSCDWTFPSIVETIILIAELFDVYWEPPDVTGFLMPLLDDYEFQGPEDLAAEIVP LILGGIGMVVGFTAEKAGKLLSSAAATLRATRELGNYGLEIVKLVMKWFFPKKESDMN AMVRNIEDAVLDLEAVESNHITHLLKDKENMAVFLRTLDLEEEKARKLSTKAASPNII ASVNALLARIAAVRSLAFKAKEEMCARQRPVVVMLSGRPGIGKTHYARELASRISKLL SSDGRVGLVPRNGVDHWDSYRGEPVVVWDDYGMGNIIKDAMMLQELADTCPLTLNCDR IENRGKMFESDVIVLTTNSPNPSPMDYVNMEAVARRVDFLVYAESPDVEKAKRDFPGD PKAWKPFFKDDHSHLVLTLAPQGGFDKSGNTPHGKGMTRNITPNGLVARAVALAVERK DEFQLQGPDPITYNFDSSQVAAFRKLAADNKYGLAETLRVGNKLRNVTTIEGFKKAVG DVRFKKCRIIWKGVTYDLESDGKGSVTIDRVQSQMVQTTGEIHQAVLRLRQARVRYYV MTAQNVTYGLLQAAGAAFVLNRIFRRAENPFSRLVKVEEDKDEDARMAIIPKKVEIVE SNLEEEGKKKGKNKQGRGRKHTAFSSKGLSDEEYEEFKQLREEKGGKYSIQEYLEDRD RFEEEVAYAQACGGDCDDIEISRIRNSIFRPSRKQRKEERVKLGLVTGSEIRKRKPDD FQPKGKLWADDERTVDYNEKLDFEAPASIWARIVQLGTGWGFWVSPNLLITSTHVIPK GVEELFGVPIKQVQIHRCGEFTRLRFSKMIRPDVTGMILEDGAPEGVVCSILVKRPTG ECLPLAVRMGTQATMKIQGKVVSGQLGMLLTGSNAKNMDLGTTPGDCGCPYVYKRGND YVVVGVHTAAGRGGNTVICAVQTGDGEAVLEGNTDNGTYCGAPIVSKGNAPQLSSKTK FWRSSVEPLPPGTFEPAYLGGRDPRVDGGPSLYQVMRDQLKHFTAPRGRPVKPHLLQA AVKTIENVLEQTIDPPTPWTYAQACQSLDKTTSSGWPHHVQKNTHWNGEAFTGPLADQ ASKANLMYEQGKSMTPQYTAALKDELVKPDKVYKKVKKRLLWGADLGTMVRCARAFGP FTDALKKCCTQLPVKVGLNINEEGPIIFEKHAQYELHYDADYSRWDSTQQREVLAAAL GIMTKFTAEPQLASVVAEDLISPSMLDVGDYVVQVNEGLPSGVPCTSQLNSIAHWIIT LTSMAEATGLDPDIVQANSYFSFYGDDEIVSTDIKFNPEVLTLKLKAIGLVPTRPDKT EGPLVVSNKLEGLTFLRRTITRDKVGFFGRLDKDSILRQMYWTKGPNHQDPSESMLPH QNRATQLMALLGESALHGQNFYKKISGMVIKEVKNGGHEFYVPKFESMYKWMRFSDLS TWEGDRDLAPDFVNEDGVE" CDS 5049..6719 /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="AFJ21376.1" /translation="MKMASSDAAPSTDGAGNLVPESQQEVLPLAPVAGAALAAPVVGQ TNIIDPWIKENFVQAPQGEFTVSPKNSPGEILVNLELGPKLNPYLDHLSRMYNSYAGG IDVMVVLAGNAFTAGKVLIAAIPPNFPVEGVSASQATQFPHVIIDVRTLDPVRLPLPD VRSTFFHYTNDTEPKMRLVIWLYTPLRTNGSGDDSFTVSGRILTRPSQDFEFAFLIPP TVETKTTPFSVPGFSVQEMSNSRWPAAISAMVVRGNEPQVVQFQNGRAHLDGMLLGTT PVSPNYIASYRGISTGNSRSASSEADERAVGSFDVWVRLQEPDGQPYDIFGKQPAPIG TPDFKAVIVGFAARPLTSGSYANEAYVNTTASDYAPATGNMRFTVRNGGTGHISANKY WEFKSFGVEGERHTDIQYQEYELPDYSGQVASNHNLAPPVAPRMPGESLLLFQSNMPV WDDGHGESTPKKIHCLLPQEFIGHFFDRQAPSLGDAALLRYVNQETNRVLFECKLYRD GYITVAASSGLLDFPLDGFFRFDSWVSSFYILSPVGSGQGRRGRVRFQ" CDS 6719..7447 /note="minor structural protein" /codon_start=1 /product="VP2" /protein_id="AFJ21377.1" /translation="MASSIMAGIAGDVLGSVVGGLVGAGANAINQSVEFGYNQALQSN AFQHDKDMLALQVAATRQLQSDLINLREQVLRKGGFSDTDAARGAIGAPMSRLVDWNG TRLSAPGSMHTTSYSGRFVGTTRQQPHFTPPPQTNHVRIDDEVSSVSSLPTAVTSVPS SRTADWVHSQRQLSSWGSSASQHSQLEPFHPNALRVAWGSTPSSSSRASTVDGSVIDS WTPAFNLKHQPFFARFHPRGASNV" 3'UTR 7448..7527 ORIGIN 1 gtgaatgaag atggcgtcta acgacgctag tgttgccaac agcaacagca aaaccattgc 61 tgccaacaac accacgaccc ctaaacaagg gggcgtgttt gcaaacatga agattgggct 121 caagaaagtt cttgaaccca aatctgagac acccacggta agaccaaaag acgtgggtaa 181 accggggggc accagtccac cggatgaccc cccaggtgtc acgatcaagt acgatgctca 241 gagtgacacc attgaagggc tccctaacct gtccactgtt ccacaaccag aggcgcgcca 301 ggttaagtgt gttccaccca tggcggagag ggaggtcaag aatgcggcgg aaccacaaac 361 cggctccctg ctagaaatgt atgatgggtc attctatcat tatgccatct acattgagaa 421 tggcctagtc gctgggataa atcgcccttc taaggctctc acaaccgcca cagtcgacgt 481 tgaaccgatt gggttgtggt ggagagtggt ctacactcca ccattctcag tctccacgtc 541 ggccctctac catctacaag gtgagaaatt cccatataac gcctttgaca acaactgtta 601 taacttctgc tgtcaggtgt tggaactgga tgattgctgg atgcgcagga agttcgtcca 661 gcgaaccact ggtttctttg acccatacca aaggtggaac ccaaaaccct cacagtatgt 721 ggctgattca aagttggaga gagtagggga cgctcttctc actgcgctgg gggcactctt 781 ctccaagcca ataaagaaca taattgggaa gctcaaacct ttgaatttct tgaatttact 841 atcgtcctgt gattggacgt tccccagcat tgttgaaacc ataatcctga ttgcagagct 901 ctttgacgtc tattgggaac caccagacgt cacagggttc ttaatgccac tcctggatga 961 ctacgaattc caggggcctg aggatttggc tgcagaaata gtcccattga tcctaggggg 1021 tatagggatg gtagtgggtt tcaccgcaga gaaggcagga aagctgttgt cctccgctgc 1081 agcaacactg agggcgacaa gggagcttgg caattatggc ctagagatcg tgaaactagt 1141 gatgaagtgg tttttcccta agaaggagag tgacatgaat gcaatggtca gaaacataga 1201 ggatgctgta ctagatctgg aagcagttga gagcaaccat atcactcacc tactcaaaga 1261 taaggaaaac atggcagtct tccttcgcac cttggacctt gaggaagaaa aggccaggaa 1321 actatccact aaggctgctt cccccaacat aattgcatct gtcaatgcct tgctcgcccg 1381 catcgctgcc gtcaggtccc ttgcgtttaa agcgaaagag gagatgtgcg cccggcagcg 1441 gccagtggtg gttatgctgt caggtcgacc aggcattggc aagacacact atgccagaga 1501 gcttgcttct aggatctcca agctgctcag ttcagatggt cgcgttgggc tcgtgccaag 1561 aaatggagtt gaccattggg actcctatag gggggaacca gtggtcgttt gggacgacta 1621 tggcatggga aacatcatta aggatgccat gatgcttcaa gaattggctg acacctgccc 1681 ccttacactc aattgcgacc gtatagagaa taggggtaaa atgtttgaaa gcgatgtcat 1741 cgtcttgacc accaattcgc ccaacccaag cccgatggat tatgtcaaca tggaggccgt 1801 cgctagaagg gtggatttct tggtgtatgc tgagtccccg gatgttgaga aggcaaaaag 1861 ggactttcca ggcgatccca aagcctggaa gcctttcttc aaagatgatc actcccacct 1921 cgttctcaca ttagctccac aaggtgggtt tgacaagagt ggtaacaccc cccacggaaa 1981 aggtatgact agaaacatca caccaaatgg actagtcgcc agagcggttg cgttggctgt 2041 ggaacgtaag gatgagttcc agctccaggg cccagatcca atcacctaca actttgattc 2101 ctcacaggtg gctgcatttc gaaagcttgc agctgacaac aagtacggcc ttgctgaaac 2161 tctccgcgtg ggcaacaaac tgaggaatgt gacaactata gagggcttca agaaggccgt 2221 gggggatgtc agatttaaaa agtgcaggat catctggaaa ggcgtaactt acgaccttga 2281 gtcagatggt aagggatcag tcaccattga cagggtgcag tcacagatgg tacagacaac 2341 tggggagatt caccaggctg tcctgcgctt acgccaagct cgggtgcggt attacgtcat 2401 gactgctcag aatgtcacct acgggctcct tcaggccgcc ggcgcagcat tcgtccttaa 2461 caggatattc aggcgtgcag agaacccatt ctcacgccta gtcaaagtgg aggaggacaa 2521 ggacgaagat gcacgcatgg ctatcatccc caaaaaggta gagattgttg aatccaatct 2581 agaggaagaa gggaaaaaga aagggaagaa caagcaaggc agaggccgta agcacacagc 2641 tttctcctcc aaaggactga gtgacgagga gtacgaagag ttcaagcagc tcagagagga 2701 gaagggagga aagtactcaa tccaagaata cctcgaagac cgtgaccgtt tcgaggaaga 2761 ggtcgcgtat gcacaggcct gtggaggtga ctgtgatgac atcgaaatca gccgcatacg 2821 caactccatt ttccgcccaa gtaggaaaca gagaaaggag gagagagtta agcttggcct 2881 ggtcaccggt tctgagatca gaaaacggaa gcctgatgac ttccagccaa aagggaaact 2941 gtgggcagat gacgagagaa ccgttgatta caacgaaaag ctggactttg aagcacccgc 3001 ttccatctgg gcgcgtatag ttcagcttgg tacaggttgg ggcttttggg tctcacccaa 3061 tctcctcatc acatcaaccc atgtcatacc aaagggtgtt gaagagttat ttggggttcc 3121 aatcaagcaa gtacaaatac acaggtgtgg cgagttcacc agacttaggt tctcgaagat 3181 gatcaggcca gatgtgactg gtatgatact tgaagatggg gcacccgaag gtgtcgtttg 3241 tagcatactg gtcaagagac caacaggtga gtgcctgcca ctagcagtca ggatgggaac 3301 ccaagctacc atgaagatac aagggaaagt ggtctcgggc caactgggga tgttgctgac 3361 tggctccaat gcaaagaaca tggacctggg gaccacccct ggtgactgtg gatgccctta 3421 cgtgtacaaa cgtggtaacg actatgtggt tgtgggtgtg cacactgccg cgggcagagg 3481 cgggaataca gtcatctgcg cggtgcaaac aggtgatggt gaagccgtac tagaaggaaa 3541 cactgataac ggcacatact gcggcgcccc aatagtgtca aaaggtaatg caccccagct 3601 atcctcaaag acaaaattct ggaggagctc tgtcgagcct ctcccgcctg gcacgtttga 3661 gcccgcctac ctcgggggtc gcgaccccag agtcgacggt gggccctcac tttaccaggt 3721 gatgagggac caacttaaac atttcacagc tcctcgtggg agaccagtca aaccccacct 3781 cttgcaggct gcagtcaaga caatcgagaa cgtgctggaa cagaccattg accccccaac 3841 accatggaca tatgcccagg cttgccagtc gcttgacaag acaacgtcga gtggctggcc 3901 ccaccatgtg cagaaaaaca cccattggaa tggtgaagca tttacaggac ccttggccga 3961 ccaagccagc aaggccaatc taatgtatga acaagggaag tccatgaccc cccagtacac 4021 tgctgccctt aaggatgaac tagtgaaacc agacaaagtg tacaaaaagg tcaagaaaag 4081 gctgctgtgg ggtgcagatc tcggaaccat ggtccggtgc gccagagcat tcggcccgtt 4141 cactgacgca cttaagaagt gctgcaccca acttccagtc aaagttggac tcaacattaa 4201 tgaagaggga cccatcatct ttgagaaaca cgcccaatat gagctccact atgatgcaga 4261 ttattcgcgg tgggattcca cccagcaacg ggaggtcctc gccgccgcac ttggcatcat 4321 gacaaaattc actgctgagc cacagctggc ctccgttgtg gcagaagact tgatttcccc 4381 aagtatgctt gatgttggcg actatgtcgt ccaggtcaat gaagggctac cctctggtgt 4441 cccctgcacc tcacagttaa acagtattgc ccattggatc atcaccctta catccatggc 4501 tgaggccact ggcctggatc ctgacatcgt ccaggctaac agctacttct ccttctatgg 4561 tgatgatgaa attgtgtcaa cagacataaa attcaatcca gaggtcctca ccctgaaact 4621 taaagcaatt ggccttgtcc caacccgccc agacaagaca gaaggcccat tggtggtgtc 4681 aaacaaatta gaaggtctga cttttctgag gcgcaccata actagagaca aagtgggctt 4741 ctttggtcgg ttggataagg attccattct caggcaaatg tactggacca agggcccgaa 4801 ccatcaagac ccatctgaaa gcatgttacc ccaccagaat cgcgccacac aattgatggc 4861 cctgttgggc gagtcagcac tccatggtca aaacttctac aaaaagatta gtggcatggt 4921 aatcaaagaa gtgaagaatg gtgggcatga gttctatgtg ccaaagtttg agtccatgta 4981 caagtggatg cggttctcag acttgagcac ttgggagggg gatcgcgatc tcgctcccga 5041 ttttgtgaat gaagatggcg tcgagtgacg ctgctccatc tacggatggt gcgggcaacc 5101 tcgttccaga gagtcaacaa gaggtgttgc ccctcgcccc agttgcaggc gctgcgttag 5161 cggcacctgt ggtgggacaa acaaatataa ttgacccctg gattaaagaa aattttgttc 5221 aagcccccca gggtgagttt actgtctcac ctaaaaattc tcctggtgaa attttagtta 5281 atttggaatt gggacccaaa ctcaacccct atctagacca cctttcacgc atgtataatt 5341 catatgctgg tggtatagat gtcatggtgg tgttggcggg caacgccttc acagccggca 5401 aggttttaat agcagctatc cccccaaatt tcccagtgga aggagtgtcc gcttcacagg 5461 ccactcaatt cccccatgtg attatagatg ttaggacact tgaccctgtg cggctccccc 5521 tcccggatgt gcgatccacg ttcttccatt atactaatga tactgaacca aagatgaggt 5581 tagttatttg gctttacacc ccacttagaa ctaatggcag tggtgatgat tctttcactg 5641 tctctgggcg catactcaca aggccctccc aggactttga gtttgctttc cttatccccc 5701 caacagtgga aacaaagaca accccctttt cagtgccagg cttctcagtg caggaaatgt 5761 ccaactcaag gtggccagct gccatctctg caatggtcgt ccgtgggaat gagccccaag 5821 tcgttcagtt ccagaatggc agggcccatc tggatggtat gctgcttggt acgacacctg 5881 tgtcgcccaa ttacatagca tcctaccgag gcatttccac tggcaactct cgttctgctt 5941 cctctgaggc cgacgagagg gccgttggta gctttgatgt gtgggtccgc ttacaagaac 6001 ctgatggcca gccctatgac atctttggta agcagccagc cccaattggc acccctgatt 6061 tcaaggccgt gatagttggc tttgcagcca ggcccctcac atccggatcc tacgcaaatg 6121 aagcgtatgt taacaccaca gccagtgact acgccccagc cactggtaat atgcgcttca 6181 cagtcaggaa cggcgggacc gggcacatat ctgcaaacaa atactgggag ttcaaatcat 6241 ttggtgttga aggagaaagg cacactgaca tccagtacca ggagtatgag cttcccgatt 6301 attctggtca agttgcttcc aaccataatc tggccccccc tgtagcccca cgcatgcctg 6361 gtgagtcact attgcttttc caatcaaata tgcctgtgtg ggatgatggg catggagagt 6421 ccacacccaa gaagattcat tgcctcttgc cacaggagtt tattggccat ttctttgaca 6481 ggcaagcccc ctctctaggt gatgctgcac tacttaggta tgtcaaccag gagacaaata 6541 gagtgttgtt tgagtgtaaa ctttataggg atggctacat cacagttgca gcatcatcag 6601 gattattaga tttccccttg gatggcttct ttaggtttga ttcttgggtt agttcttttt 6661 acattttatc ccccgtggga agcggccaag gccgcagggg tagagtgagg tttcaataat 6721 ggcttctagc attatggcag gcatagcagg cgatgtgcta ggctcagttg tgggtggatt 6781 agttggagcc ggtgctaacg ccataaacca atctgttgaa tttgggtaca accaagcact 6841 gcaatctaat gctttccaac atgataaaga catgcttgcc ttacaggtgg ccgcgacccg 6901 ccagctacag tcggatttga tcaacttgcg cgagcaggtt cttcgcaagg gtggtttctc 6961 cgacactgat gcggcgcgtg gagccattgg tgcccccatg tcacgccttg tggattggaa 7021 cggcacaagg ttgtccgccc cgggttccat gcacacaaca tcatactcgg gccggtttgt 7081 tggcacaacc agacaacaac cccacttcac ccctcctccg caaactaatc atgttagaat 7141 tgatgatgaa gtttcttctg tctcttcctt gcccacagcg gtgacctcag tccctagttc 7201 taggacagct gattgggttc atagtcaaag acagctatcc tcctggggtt ctagtgcatc 7261 ccaacattca cagctggaac cctttcatcc aaacgctctg agagtggctt gggggtctac 7321 tccgagttcc tcctccagag cgtccactgt ggatggttca gtcattgatt catggacccc 7381 cgcttttaat ttgaagcatc agcctttctt tgctcgcttt cacccgaggg gtgcttctaa 7441 tgtttagtca acaactcact aatgagtagt tgtgagtttt tgtaatctgt gaaatgtaga 7501 ttctttaatt aattgaaatt ggcattt // LOCUS AF414426 3276 bp ss-RNA linear VRL 26-JUL-2016 DEFINITION Norwalk-like virus NLV/Fort Lauderdale/560/1998/US RNA polymerase (orf1) gene, partial cds; and capsid protein (orf2) and minor structural protein (orf3) genes, complete cds. ACCESSION AF414426 VERSION AF414426.1 KEYWORDS . SOURCE Norwalk-like virus NLV/Fort Lauderdale/560/1998/US ORGANISM Norwalk-like virus NLV/Fort Lauderdale/560/1998/US Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3276) AUTHORS Fankhauser,R.L., Monroe,S.S., Noel,J.S., Humphrey,C.D., Bresee,J.S., Parashar,U.D., Ando,T. and Glass,R.I. TITLE Epidemiologic and molecular trends of 'Norwalk-like viruses' associated with outbreaks of gastroenteritis in the United States JOURNAL J. Infect. Dis. 186 (1), 1-7 (2002) PUBMED 12089655 REFERENCE 2 (bases 1 to 3276) AUTHORS Fankhauser,R.L., Noel,J.S., Monroe,S.S., Glass,R.I. and Ando,T. TITLE Direct Submission JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of Viral and Rickettsial Diseases/National Center for Infectious Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..3276 /organism="Norwalk-like virus NLV/Fort Lauderdale/560/1998/US" /mol_type="genomic RNA" /strain="Hu/NLV/Fort Lauderdale/560/1998/US" /db_xref="taxon:171858" /note="derived from human stool; NLV/560; group: GIV/1" gene <1..819 /gene="orf1" CDS <1..819 /gene="orf1" /note="nonstructural protein" /codon_start=1 /product="RNA polymerase" /protein_id="AAL13030.1" /translation="YDADYSRWDSTQQREVLAAALGIMTKFTAEPQLASVVAEDLISP SMLDVGDYVVQVNEGLPSGVPCTSQLNSIAHWIITLTSMAEATGLDPDIVQANSYFSF YGDDEIVSTDIKFNPEVLTLKLKAIGLVPTRPDKTEGPLVVSNKLEGLTFLRRTITRD KVGFFGRLDKDSILRQMYWTKGPNHQDPSESMLPHQNRATQLMALLGESALHGQNFYK KISGMVIKEVKNGGHEFYVPKFESMYKWMRFSDLSTWEGDRDLAPDFVNEDGVE" gene 800..2470 /gene="orf2" CDS 800..2470 /gene="orf2" /note="major structural protein" /codon_start=1 /product="capsid protein" /protein_id="AAL13031.1" /translation="MKMASSDAAPSTDGAGNLVPESQQEVLPLAPVAGAALAAPVVGQ TNIIDPWIKENFVQAPQGEFTVSPKNSPGEILVNLELGPKLNPYLDHLSRMYNSYAGG IDVMVVLAGNAFTAGKVLIAAIPPNFPVEGVSASQATQFPHVIIDVRTLDPVRLPLPD VRSTFFHYTNDTEPKMRLVIWLYTPLRTNGSGDDSFTVSGRILTRPSQDFEFAFLIPP TVETKTTPFSVPGFSVQEMSNSRWPAAISAMVVRGNEPQVVQFQNGRAHLDGMLLGTT PVSPNYIASYRGISTGNSRSASSEADERAVGSFDVWVRLQEPDGQPYDIFGKQPAPIG TPDFKAVIVGFAARPLTSGSYANEAYVNTTASDYAPATGNMRFTVRNGGTGHISANKY WEFKSFGVEGKRHTSIQYQEYELPDYSGQVASNHNLAPPVAPRMPGESLLLFQSNMPV WDDGHGESTPKKIHCLLPQEFIGHFFDKQAPSLGDAALLRYVNQETNRVLFECKLYRD GYITVAASSGLLDFPLDGFFRFDSWVSSFYILSPVGSGQGRRGRVRFQ" gene 2470..3198 /gene="orf3" CDS 2470..3198 /gene="orf3" /codon_start=1 /product="minor structural protein" /protein_id="AAL13032.1" /translation="MASSIMAGIAGDVLGSVVGGLVGAGANAINQSVEFGYNQALQSN AFQHDKDMLALQVAATRQLQSDLINLREQVLRKGGFSDTDAARGAIGAPMSRLVDWNG TRLSAPGSMHTTSYSGRFVGTTRQQPHFIPSLQTNHVRVDDEASSVSSLPTTVTSVPS SRTVDWVHSQRQLSSWGSSASQHSQLEPFHPNALRVAWGSTPSSSSRASTVDGSVIDS WTPAFNLKHQPFFARFHPRGASNV" 3'UTR 3199..3276 ORIGIN 1 tatgatgcag attattcgcg gtgggattct acccagcaac gggaggttct cgccgccgca 61 cttggcatca tgacaaaatt caccgctgag ccacaactgg cctctgtcgt agcagaagac 121 ttgatttctc caagtatgct tgacgttggc gactatgtcg tccaggtcaa tgaagggctg 181 ccctctggtg ttccctgcac ttcacaatta aacagtattg cccattggat catcactctc 241 acatccatgg ctgaggccac tggcctggac cctgacatcg tccaggctaa cagttacttt 301 tctttctatg gtgatgatga gattgtgtca acagatataa aattcaaccc agaagtcctc 361 accctgaagc ttaaagcaat tggccttgtc ccaacccgcc cagacaagac tgagggccca 421 ctggtggtgt ctaacaagtt agaagggctg acttttctga ggcgcaccat aactagagac 481 aaggtgggct tctttggtcg gctggataag gattccattc ttaggcaaat gtactggacc 541 aagggcccga accatcaaga cccatctgaa agcatgttac cccaccagaa tcgcgctaca 601 caattgatgg ccctattggg cgagtcagca ctccacggcc aaaacttcta caaaaagatc 661 agtggcatgg taatcaaaga agtgaagaat ggtgggcatg agttttatgt gccaaagttt 721 gagtccatgt acaagtggat gcggttctca gatttgagca cttgggaggg ggatcgcgat 781 ctcgctcccg attttgtgaa tgaagatggc gtcgagtgac gctgctccat ctacggatgg 841 tgcgggcaac ctcgttccag agagtcaaca agaggtattg cccctcgccc cagttgcagg 901 cgctgcacta gcggcacctg tggtggggca gacaaatata attgacccct ggattaaaga 961 aaactttgtt caagcccctc agggtgagtt tactgtctca cctaaaaatt ctcctggtga 1021 aattttagtt aatttggaat tgggacccaa actcaaccct tatctagacc acctttcacg 1081 tatgtacaat tcatatgctg gtggcataga tgtcatggta gtgttggcgg gcaacgcctt 1141 cacagccggc aaggttttaa tagcagctat ccccccaaat tttccagtgg aaggagtgtc 1201 cgcttcacag gccactcaat ttccccatgt gattatagat gttaggacac ttgaccctgt 1261 gcggcttccc ctcccggatg tgcgatccac attcttccat tacaccaatg atactgaacc 1321 aaaaatgagg ttagttattt ggctttacac cccactcaga actaatggca gtggtgatga 1381 ttctttcacc gtctctgggc gcatactcac aaggccctcc caggattttg aatttgcttt 1441 ccttatccct ccaacagtgg aaacaaagac aacccccttt tcagtgccgg gcttctcagt 1501 gcaagaaatg tccaactcaa ggtggccagc tgccatctct gcaatggtcg tccgtgggaa 1561 tgagccccaa gttgttcagt tccagaatgg tagggcccat ctggatggta tgctgcttgg 1621 cacgacaccc gtgtcgccta actacatagc atcctaccga ggcatttcca ctggtaactc 1681 tcgctctgct tcctctgagg ctgacgagag ggccgttggt agttttgatg tgtgggtccg 1741 cttacaagaa cctgatggcc agccctatga catctttggt aagcagccag ccccaattgg 1801 cacccctgat ttcaaggccg tgatagttgg ctttgcagct aggcccctca catccgggtc 1861 ctacgcaaat gaagcgtatg tcaacaccac agccagtgac tacgccccag ccactggtaa 1921 tatgcgcttc acagtcagga acggcgggac cgggcacata tctgcaaata aatactggga 1981 gttcaaatca tttggcgttg agggaaaaag gcacactagt atccagtacc aggagtatga 2041 acttcccgat tattctggtc aagttgcttc caaccataat ctggcccccc ctgtagcccc 2101 acgcatgcct ggtgagtccc tattgctttt ccaatcaaat atgcctgtgt gggatgatgg 2161 gcatggagag tccacaccca agaagatcca ttgcctgttg ccacaggagt tcattggcca 2221 tttctttgac aagcaagccc cctccctagg tgatgctgca ctacttaggt atgtcaacca 2281 ggagacaaat agagtgttgt ttgagtgtaa actttataga gatggttaca tcacagttgc 2341 tgcatcatca ggattattgg atttcccctt ggatggattc tttaggtttg attcttgggt 2401 tagttctttt tatattttat cccccgtggg aagcggccaa ggccgtaggg gtagagtgag 2461 gtttcaataa tggcttctag cattatggca ggtatagcag gcgatgtgct aggatcagtt 2521 gtgggtggac tagtcggagc cggcgctaac gccataaatc agtctgttga atttgggtac 2581 aaccaagcac tgcaatctaa tgctttccaa catgataaag acatgcttgc cttgcaggtg 2641 gccgcgaccc gtcagctaca gtcggatttg atcaacttgc gcgagcaggt tcttcgcaag 2701 ggtggtttct ccgacactga tgcggcgcgt ggagccattg gtgcccccat gtcacgcctt 2761 gtggattgga atggcacaag gttgtccgcc ccgggttcca tgcacacaac atcatactcg 2821 ggtcggtttg ttggcactac cagacagcag ccccacttca ttccctccct acaaactaat 2881 catgttagag ttgatgatga agcttcttct gtttcttctt tgcctactac ggtgacttca 2941 gtccctagtt ctaggacagt tgattgggtt catagccaaa ggcaactgtc ctcctggggt 3001 tctagtgcat cccaacactc acagctggaa cccttccatc caaacgctct gagagtagcc 3061 tgggggtcta ctccgagttc ctcctccaga gcgtccactg tggatggctc agttattgat 3121 tcatggacac ccgctttcaa tctgaaacac cagcctttct ttgctcgttt tcacccgagg 3181 ggtgcttcta atgtttagtc aacaactcac taatgagtag ttgtgagttt tgtaatctgt 3241 gaaatgtaga ttctttgatt aactgaattg gcatgc // LOCUS AF414427 3244 bp ss-RNA linear VRL 26-JUL-2016 DEFINITION Norwalk-like virus NLV/Saint Cloud/624/1998/US RNA polymerase (orf1) gene, partial cds; and capsid protein (orf2) and minor structural protein (orf3) genes, complete cds. ACCESSION AF414427 VERSION AF414427.1 KEYWORDS . SOURCE Norwalk-like virus NLV/Saint Cloud/624/1998/US ORGANISM Norwalk-like virus NLV/Saint Cloud/624/1998/US Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3244) AUTHORS Fankhauser,R.L., Bartkus,J., Noel,J.S., Monroe,S.S., Glass,R.I. and Ando,T. TITLE Detection and identification of a strain belonging to the new genogroup of 'Norwalk-like viruses' in human, genogroup IV JOURNAL Unpublished REFERENCE 2 (bases 1 to 3244) AUTHORS Fankhauser,R.L., Bartkus,J., Noel,J.S., Monroe,S.S., Glass,R.I. and Ando,T. TITLE Direct Submission JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of Viral and Rickettsial Diseases/National Center for Infectious Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..3244 /organism="Norwalk-like virus NLV/Saint Cloud/624/1998/US" /mol_type="genomic RNA" /strain="Hu/NLV/Saint Cloud/624/1998/US" /db_xref="taxon:171859" /note="derived from human stool collected in outbreak No.624; NLV/624; group: GIV/1" gene <1..787 /gene="orf1" CDS <1..787 /gene="orf1" /note="nonstructural protein" /codon_start=2 /product="RNA polymerase" /protein_id="AAL13033.1" /translation="QQREVLAAALGIMTKFTAEPQLASVVAEDLISPSMLDVGDYVVQ VNEGLPSGVPCTSQLNSIAHWIITLTSMAEATGLDPDIVQANSYFSFYGDDEIVSTDI KFNPEVLTLKLKAIGLVPTRPDKTEGPLVVSNKLEGLTFLRRTITRDKVGFFGRLDKD SILRQMYWTKGPNHQDPSESMLPHQNRATQLMALLGESALHGQNFYKKISGMVIKEVK TGGHEFYVPKFESMYKWMRFSDLSTWEGDRDLAPDFVNEDGVE" gene 768..2438 /gene="orf2" CDS 768..2438 /gene="orf2" /note="major structural protein" /codon_start=1 /product="capsid protein" /protein_id="AAL13034.1" /translation="MKMASSDAAPSADGAGNLVPESQQEVLPLAPVAGAALAAPVVGQ TNIIDPWIKENFVQAPQGEFTVSPKNSPGEILVNLELGPKLNPYLDHLSRMYNSYAGG IDVMVVLAGNAFTAGKVLIAAIPPNFPVEGVSASQATQFPHVIIDVRTLDPVRLPLPD VRSTFFHYTNDTEPKMRLVIWLYTPLRTNGSGDDSFTVSGRILTRPSQDFEFAFLIPP TVETKTTPFSVPGFSVQEMSNSRWPAAISAMVVRGNEPQVVQFQNGRAHLDGMLLGTT PVSPNYIASYRGISTGNSRSASTEADERAVGSFDVWIRLQEPDGQPYDIFGKQPAPIG TPDFKAVIVGFAARPLTSGSYANEAYVNTTASDYAPATGNMRFTVRNGGSGHISANKY WEFKSFGVEGERHTDIQYQEYELPDYSGQVASNHNLAPPVAPRMPGESLLLFQSNMPV WDDGHGESTPKKIHCLLPQEFIGHFFDKQAPSLGDAALLRYVNQETNRVLFECKLYRD GYITVAASSGLLDFPLDGFFRFDSWVSSFYILSPVGSGQGRRGRVRFQ" gene 2438..3166 /gene="orf3" CDS 2438..3166 /gene="orf3" /codon_start=1 /product="minor structural protein" /protein_id="AAL13035.1" /translation="MASSIMAGIAGDVLGSVVGGLIGAGANAINQSVEFGYNQALQSN AFQHDKDMLAMQVAATRQLQSDLINLREQVLRKGGFSDTDAARGAIGAPMSRLVDWNG TRLSAPGSMHTTSYSGRFVGTTRQQPHFSPSPQVNHVRADDGVSSVSSLPTAVTSVPS SRTAEWVHNQRQLSSWGSSASQYSQLEPFHPNALRVAWGSTPSSSSKASTVDGSIIDS WTPAFNLKHQPFFARFHPRGASNV" 3'UTR 3167..3244 ORIGIN 1 ccaacaacga gaagtcctcg ccgctgcact cggcatcatg acaaaattca ccgctgagcc 61 acaattggcc tctgttgtgg ctgaagactt gatttcccct agcatgcttg atgttggcga 121 ctatgtcgtc caggtcaacg aggggttacc ctccggtgtt ccttgcacct cacagttaaa 181 cagcattgcc cattggatca tcactctcac atccatggcc gaggccactg gcttggaccc 241 tgacatcgtc caggctaata gctacttttc cttctatggt gatgatgaga ttgtgtcaac 301 agatataaag ttcaacccag aagtcctcac tctgaagctt aaagcaattg gcctcgtccc 361 aacacgccca gacaaaacag agggcccatt ggtggtgtct aataagctag aagggttgac 421 attcctgagg cgcaccataa ctagagataa agtgggcttc tttggtcggc tggataagga 481 ctccatcctc agacaaatgt actggaccaa gggcccgaat catcaagacc catctgaaag 541 tatgctgccc caccagaatc gcgccacaca attgatggcc ctattgggcg agtcagctct 601 ccatggtcag aatttctaca aaaagatcag tggcatggtt atcaaagaag tgaagactgg 661 tgggcatgag ttttatgtgc caaagtttga gtctatgtac aagtggatgc gattctcaga 721 cctgagcact tgggaggggg atcgcgatct cgctcccgat tttgtgaatg aagatggcgt 781 cgagtgacgc tgctccatct gcggatggtg cgggcaacct cgtcccagag agtcaacaag 841 aggtattgcc cctcgccccc gttgcgggcg ctgcactagc ggcacccgta gtggggcaga 901 caaacataat tgacccctgg attaaagaaa attttgttca agccccccaa ggtgagttta 961 cagtctcacc taaaaactct cctggtgaaa ttttagtcaa tttggaattg ggacccaaac 1021 tcaaccccta tctggatcac ctttcacgta tgtacaattc atatgctggt ggtatagatg 1081 ttatggtggt gttggcgggt aacgccttca cagccggtaa ggttctaata gcagccattc 1141 ccccaaattt tccagtagaa ggagtgtccg cctcccaggc cactcagttc ccccatgtga 1201 tcatagatgt tagaacactt gaccctgtgc gtcttccact cccagacgtg cgatctacat 1261 tcttccatta caccaatgac actgaaccaa aaatgaggtt ggttatttgg ctctataccc 1321 cacttagaac taatggcagt ggtgatgatt ctttcaccgt ctctgggcgc atactcacaa 1381 ggccctccca ggattttgag tttgcattcc ttattccccc aacagtggaa acaaagacaa 1441 cccccttttc agtgccaggc ttctcagtgc aggagatgtc caactctagg tggccggccg 1501 ccatctctgc gatggttgtc cgaggaaatg agcctcaggt tgtccagttc cagaatggta 1561 gggcccacct ggatggtatg ttacttggta cgacacccgt gtcgcccaac tacatagcat 1621 cctatcgagg tatttccacc ggcaactctc gctctgcctc cactgaggcc gacgagaggg 1681 ctgttggcag cttcgatgtg tggatccgct tacaagaacc tgatggacag ccctatgaca 1741 tctttggcaa gcagccagcc ccaattggca cccctgactt caaggccgtg atagttggtt 1801 ttgcagccag gccccttaca tccgggtcct acgcaaatga agcgtatgtt aacaccacag 1861 ccagtgacta tgccccagcc actggtaaca tgcgcttcac ggtcaggaat ggtggatccg 1921 ggcacatatc tgcaaacaaa tactgggagt tcaaatcatt tggtgttgaa ggagagaggc 1981 acactgatat ccagtatcag gagtacgagc ttcctgatta ctctggccag gttgcttcca 2041 accacaacct ggcccccccc gtggccccac gcatgcctgg tgagtctcta ttgcttttcc 2101 aatcaaatat gcctgtgtgg gacgatgggc atggtgagtc cacacccaag aagatccact 2161 gcctgctgcc acaagaattc attggccact tctttgataa acaggccccc tccctaggtg 2221 atgctgcatt gctcaggtat gtcaatcaag agacaaacag ggtgctgttt gagtgcaaac 2281 tttataggga tggttacatc actgttgctg catcatcagg gttgctagat ttccccttgg 2341 atggattctt taggtttgat tcttgggtta gttctttcta cattttatcc cctgtgggaa 2401 gcggccaagg ccgaaggggt agagtgaggt ttcaataatg gcttctagca tcatggcagg 2461 aatagctggc gatgtgctag gctcagttgt gggtgggttg atcggagctg gcgccaacgc 2521 cataaatcaa tctgttgaat ttggatacaa ccaagcacta caatctaatg ctttccaaca 2581 tgataaagac atgctcgcca tgcaggtggc cgcgacccgt cagctacagt cggacttgat 2641 caacttgcgc gagcaggttc ttcgcaaggg tggtttctcc gacactgacg cggcgcgtgg 2701 agctattggt gcccccatgt cgcgtcttgt ggactggaat ggcacaagac tgtccgcccc 2761 gggttccatg catacaacat catactcggg tcggttcgtc ggcactacca ggcaacaacc 2821 tcacttttcc ccctccccgc aggttaatca tgttagggct gatgatggag tctcctctgt 2881 ttcttctcta ccaactgcgg tgacctcagt tcccagctct aggacagccg agtgggttca 2941 caatcaaagg cagttgtctt cctggggatc tagtgcatct caatattctc aattagaacc 3001 ctttcaccca aacgctctga gggtagcttg ggggtctact ccgagttcct cttctaaagc 3061 gtccaccgta gatggctcaa ttattgattc atggacacct gcttttaatc tgaaacatca 3121 acccttcttt gctcgtttcc acccgagggg tgcttctaat gtttagtcaa ctgctcacta 3181 atgagtggtt gtaagttttg taatctgtga aatgtagatt ctttgattaa ttgaattggc 3241 atgc // LOCUS KX907728 7419 bp RNA linear VRL 18-NOV-2016 DEFINITION Norovirus Hu/USA/2016/GIV.3/WI7002, partial genome. ACCESSION KX907728 VERSION KX907728.1 KEYWORDS . SOURCE Norovirus Hu/USA/2016/GIV.3/WI7002 ORGANISM Norovirus Hu/USA/2016/GIV.3/WI7002 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7419) AUTHORS Collins,N., Aswath,K., Barclay,L. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (28-SEP-2016) NCIRD/DVD/GRVLB, CDC, 1600 Clifton Rd NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7419 /organism="Norovirus Hu/USA/2016/GIV.3/WI7002" /mol_type="genomic RNA" /strain="Hu/USA/2016/GIV.3/WI7002" /host="Homo sapiens" /db_xref="taxon:1914547" /country="USA" /collection_date="11-May-2016" /note="genotype: GIV" CDS 4..5061 /note="ORF1" /codon_start=1 /product="polyprotein" /protein_id="APA31972.1" /translation="MKMASNDASVASSSTTTATNNDKTPTNTGGVFSNLRVGIKKALN SKQGPLELRDGSNTRPPDIQHSEGQVRFNAKDETVQGIPDLTTAPIPTIRQAKCVPPM SEREVRVAQEPQTGSLLEMYDGSFYHYAIYIENGLVAGINRPSKALTTATVDVEPIGL WWRVVYTPPFSVSTSALYHLQGEKFPYNAFDNNCYNFCCQVLELDDCWMRRRYVQRTS GFFDPYQSWNPKPSQYTADSKLERVGDALLTALGALFSKPIKNIVGKLKPLNFLNLLS ACDWTFAGIVETAILIAELFDIYWDPPDVTNFLMPLLDDFELQGPEDVAAEIVPIILG GIGMVVGFTAEKAGRLLSSAAATLRATKELGNYGLEIVKLIMKWFFPKKESDMNSMVR NIEDAVLDLESVENNHITHLLKDKENMAIFLRTLDLEEEKARKLSTKAASPDIVSSVN ALLARIAAVRSLAFKAKEEMCARQRPVVVMISGRPGIGKTHYARDLASRISKLLTTDG RVGLVPRNGVDHWDAYRGEPVVVWDDYGMGNIVKDAMMLQELADTCPVTLNCDRIENK GKMFESDVIVLTTNSPNPTPMDYVNMEAVARRVDFLVYADSPEIEKAKRDFPGDPKAW KPHFKDDHSHLNLLLAPQGGFDRNGNTPHGKGQVKNITPNGLVARAVALAVERRDDFQ LQGGEPQTYNFDSSQVAAFRKLAADNKYGLAETLRVGNKLRSVTTIEGFKKAVGDVKF KKCRIIWKGVTYDLESDGKGSVKIDRVQSQMVQTTGEIHQAVLRLRQARVRYYVMTAQ NVVYGLLQAAGAAFVLNRIFRRAENPFSRMIKVEGEDDDPHAAPPVPTTPKVEIVQAD IEEEGKKKGKNKQGRGRKHTAFSSKGLSDEEYEEFKQIREERGGKYSIQEYLEDRDRF EEEVAYAQACGGDCDDIEIGRIRNSIFRPSRKQRKEERVKLGLVTGTEIRKRKPDDFQ PKGKLWADDDRTVDYHEKLDFEAPASIWARVVQLGTGWGFWVSPNLLITSTHVIPKGV EELFGVPIQQVQVHKCGEFTRLRFPKMIRPDVSGMILEDGAPEGVVCSILVKRPTGEC LPLAVRMGTQATMKIQGKVVSGQLGMLLTGSNAKNMDLGTTPGDCGCPYVYKRGNDYI VVGVHTAAGRGGNTVICAVQTSDGEAVLEGNSDNGTYCGAPIVSKGRAPQLSTKTKFW RSSVEPLPPGTYEPAYLGGRDPRVNDGPSLYQVMRDQLKHFTAPRGRPVKPHLLQAAV KTIENTLEQTIDPPQPWSYSQACQSLDKSTSSGWPHHVQKNTHWNGESFTGPLADQAS RANLMYEQAKSMTPQYTAALKDELVKPEKVYSKVKKRLLWGADLGTMVRCARAFGPFT DAIKKCCVSLPIKVGLNINEEGPIVFEKHSQYEFHYDADYSRWDSTQQREVLAAALGI MTKFTAEPHLAAVVAEDLLAPSMLDVGDYVVQVNEGLPSGVPCTSQLNSMAHWILTLT SLAEATGLDPDIIQANSYFSFYGDDEIVSTDVKFNPEVLTLKLKAVGLVPTRPDKTEG PLIVSRKLEGLTFLRRTITRDKAGLFGKLDKDSILRQLYWTKGPNHQDPSESMLPHQN RATQLMALLGESALHGQNFYKKVSGMVIKEIKNGGHEFYVPKFESMYKWMRFSDLSTW EGDRDLAPDYVNEDGVE" CDS 5042..6706 /note="ORF2" /codon_start=1 /product="major capsid protein VP1" /protein_id="APA31973.1" /translation="MKMASNDAPPSSDGAGNLVPESHQEVLPLAPVAGAELAAPVVGQ TNIIDPWIKENFVQAPQGEFTVSPKNAPGEILVNLELGPNLNPYLEHLSRMYNAYAGG IEVEIILAGNAFTAGKILIAAVPPNFPVESVSASQATQFPHAIVDVRTLEPVRLPLPD VRSNFFHYTTKDEPKMRLVIWLYTPLRTNGSGDDSFTVSGRLLTRPSMDFQFSFLVPP TVETKTVLFTVPGLTPQEMSNSRWPAQISGMVVRGNEPQVVQFQNGRCHTDGTLLGTT TVSEQCIAGFVGTSTNTRSATGSTTETRTGDTDLWLRLEEPNGQPYDIFGDQPAPLGT PDFRAVIVGFASRPQTQGSYMNEAYVNTVDSHFAPATGNTKIILRRGGTGHVGGGHLW KFRPFGVEGGEGRVSYQEYVLPNYSGATASNHNLAPPVAPRMPGELLLLFESDMPVWD DGHGAAPAQKIHCLLPQQFITHFFDSQAPALAEAALLRYVHPDSSRVLFETKLYREGF MVVSAPTGRFDFPLDGYFRFDSWVNSFYVLSPVGSGQGRRGRSKVV" CDS 6706..7419 /note="ORF3" /codon_start=1 /product="hypothetical protein" /protein_id="APA31974.1" /translation="MAANIFAGIAGDILGSTVSGLVNAGANAINQGVEFGFNQALQEN SFRHDRDMLERQVAATRQLQSDLIAVREQALRRGGFSDADAARGAVGGPMTKLVDWNG TRLAAPGAMHTTAYSGRFISAPQRTPHTYGTSKTQQTSTGTPLQSDTSSVVSQPTTST SLSRTRTQSWVSEQQRLQPFHPNALQLTWGSVPSSSGSSVRSASTVSGTVLDSWTPAF NLKHQPLFARFHPRGASNV" ORIGIN 1 tgaatgaaga tggcgtctaa cgacgcttcc gttgctagta gcagcactac aactgccaca 61 aacaacgaca aaacccccac caacactggg ggtgtcttct ccaacctgag ggttggaatt 121 aagaaggccc tcaattcaaa acaggggcca ctggagctta gggatggctc caataccaga 181 cctcccgata tccaacacag tgagggccag gttcggttta atgccaagga cgaaacagtc 241 caagggatcc cggacctaac aacggcgccg atacccacca tccggcaggc caagtgtgtc 301 cctcccatgt cagagagaga ggttcgtgtg gcccaagaac cacaaaccgg gtcactgctg 361 gagatgtacg atgggtcttt ctaccactac gccatttaca ttgaaaatgg attggtggct 421 ggtataaatc gaccctctaa ggccctaaca actgccactg ttgatgttga gcccatagga 481 ttgtggtggc gggtggtcta caccccgcca ttctctgtct ctacctcagc actgtaccac 541 ctccaagggg aaaagttccc ttataatgct tttgacaaca actgttacaa cttctgttgc 601 caagttttgg aactcgacga ctgctggatg agaaggcggt atgtacagag gacgtcgggt 661 ttcttcgacc cataccagag ctggaaccca aagccgtcgc agtacacagc tgactcaaaa 721 ctggagagag tgggcgacgc cctcctcacc gccttaggag ccttgttctc aaaacccatt 781 aagaacatag ttggtaaact caaaccattg aatttcttga acttattgtc ggcctgcgat 841 tggacattcg ctggcattgt ggagacggcg atcttaatag cagaactgtt tgatatctac 901 tgggatccgc ctgatgtcac taacttcttg atgcctctgc tagatgactt tgaactccaa 961 ggaccagaag acgtggcagc tgagatagtc ccgataatat taggtggcat aggaatggtg 1021 gtggggttca cagcagagaa agctggtcgc cttttgtcgt ctgcggctgc cactctgaga 1081 gccactaaag aactcggcaa ctatggactg gagattgtta aattaatcat gaagtggttc 1141 ttcccaaaga aggaaagtga catgaattcc atggtcagga atattgaaga tgctgtgctg 1201 gacctagagt ctgtagagaa caaccatatc acgcaccttc ttaaggacaa agaaaacatg 1261 gccatctttc tgcggacact agatctagag gaagagaaag ccagaaaact ctccaccaag 1321 gcggcttctc ctgacatagt ctcatctgtg aacgccctcc tggcgcggat agccgcagtt 1381 aggtcactgg cttttaaagc caaagaggag atgtgtgcca gacaaaggcc tgtggttgta 1441 atgatatcag ggaggccagg catagggaag actcactatg ccagagatct tgcttcccgc 1501 atctcaaaac tgctcaccac tgatggaagg gtcggtcttg tcccccgtaa cggggttgat 1561 cactgggacg cctatagagg agaaccagtg gtagtttggg atgattatgg tatgggtaac 1621 atcgtgaagg acgcaatgat gttacaagag ttggcggaca cttgcccggt caccctgaat 1681 tgtgaccgaa tagagaacaa gggcaagatg tttgagagcg atgtcatcgt tctcaccacc 1741 aattcaccaa acccaacacc catggattat gtcaacatgg aggctgttgc caggagagtt 1801 gacttcttgg tctatgcgga ttccccggag atcgagaaag ccaagaggga tttcccagga 1861 gatcccaagg cctggaaacc acacttcaag gatgatcact cacatctcaa cctcttgctg 1921 gccccccagg gaggctttga tcggaacggc aacacacccc atgggaaggg gcaggtcaag 1981 aacataacac caaatggtct cgttgcccgt gcagtcgcat tagcagtgga aaggagggac 2041 gacttccagc tccagggggg agagccgcag acctataatt ttgactcctc ccaagttgca 2101 gccttcagga aactggcagc agacaacaag tacggccttg ctgagactct tcgcgttggg 2161 aacaaactga ggagtgtaac caccattgaa ggttttaaga aggctgttgg agatgtcaaa 2221 tttaagaagt gcaggatcat ctggaagggc gtgacctacg atctagagtc agatgggaag 2281 ggctctgtta agatcgacag agtgcagtct cagatggtcc agacaaccgg cgagatacac 2341 caggcagtcc tgcggctgcg acaggccaga gtcagatact atgtcatgac cgcccagaat 2401 gtcgtctatg ggctacttca agccgcaggt gcggcgtttg tcctgaacag gatattcagg 2461 agagccgaga accccttttc tcgcatgatc aaggtcgaag gggaggatga tgacccccac 2521 gccgccccac ccgtgccaac aactcctaaa gttgagatag tccaggctga tattgaggag 2581 gagggcaaga agaaaggaaa gaataaacag gggcgcggtc gcaagcatac cgcgttctcg 2641 tctaaaggcc tcagtgatga agagtatgag gaattcaaac aaataagaga agaaaggggt 2701 ggcaaatatt ccatacagga gtatttggaa gaccgcgacc ggttcgaaga agaggtcgct 2761 tatgcccaag cttgtggtgg tgactgtgac gacatcgaga taggccgcat cagaaattcc 2821 atctttcgcc ccagcaggaa acagaggaaa gaggagagag ttaaacttgg tctggtgact 2881 ggaactgaga tcaggaaaag aaagccagat gacttccaac ctaaaggaaa actgtgggct 2941 gatgatgaca gaactgtgga ttaccatgaa aagctagact ttgaagcccc tgcatccatc 3001 tgggcacgag tggtgcagct tgggacagga tggggatttt gggtatcacc caatctcctc 3061 ataacatcga cacacgtcat ccccaaaggg gtcgaggaac ttttcggagt cccaatccag 3121 caagtccagg tgcacaaatg tggtgaattc acccgcttga ggtttccaaa aatgatcagg 3181 cctgatgttt ctggaatgat actggaagat ggcgccccag agggggtggt ttgcagtata 3241 ctggtcaaga ggccaacagg ggaatgcttg cccttggcag tcagaatggg cacccaagct 3301 acaatgaaaa ttcaaggtaa ggtggtttca ggccagttgg gcatgctact cacagggtcc 3361 aacgctaaga acatggacct aggaacaacc cctggagact gtggatgtcc ctatgtgtac 3421 aaaagaggca acgactacat agtcgttgga gtgcacaccg cggctggacg tggagggaac 3481 acagtcattt gcgccgttca gacgagtgat ggagaggcgg tgctggaagg gaattctgac 3541 aatggaacat actgtggggc acccattgtc tcaaaggggc gagcccctca actttcaact 3601 aaaacaaaat tctggaggag ctcagttgaa ccattaccac ctggtaccta tgagcctgct 3661 taccttggag gtcgcgaccc tagggttaac gacgggccat cactttacca ggttatgaga 3721 gaccaactta aacatttcac agctcctcgt gggcgccctg taaagccaca cttgctccag 3781 gctgctgtca agacaattga gaacacgctt gaacagacca tagatccgcc ccagccatgg 3841 agctattccc aagcatgcca gtcgctagac aagtcaacgt cgagtggctg gccccatcac 3901 gtccagaaga atacacactg gaatggtgag tcattcacag gccccctggc tgatcaggct 3961 agcagggcga accttatgta tgaacaggca aagtccatga cacctcagta cacagcagca 4021 ctcaaagatg aactagtaaa acctgagaaa gtgtatagca aggttaagaa acggctcctg 4081 tggggagctg atctaggcac tatggtgagg tgtgctagag cgtttggacc attcacagac 4141 gcgattaaga aatgctgtgt ctccctgcca attaaggtcg ggcttaacat caatgaggag 4201 ggaccaattg tgtttgagaa gcattcccag tatgagttcc actacgatgc agactactca 4261 cgctgggatt ccactcaaca gagagaggtt ttggccgcag cactggggat tatgacaaag 4321 ttcacagctg agccacactt ggccgcggtg gtggcagaag acctcctggc gcccagcatg 4381 ctggatgtgg gagattatgt ggttcaagtc aatgagggct taccatctgg ggttccctgt 4441 acatcacagt taaacagcat ggcacactgg atcctcacct taacatcgct ggcagaggcc 4501 acaggcttgg acccagatat cattcaagca aatagctact tctcatttta tggtgatgat 4561 gagatagtgt caactgatgt caaattcaac cccgaggtcc tgacgttgaa gctgaaggct 4621 gtcggcctgg tcccaacgag gccagacaaa acagaaggac cactcattgt ctccagaaaa 4681 ctggagggcc tcaccttttt gaggagaaca ataaccagag ataaggcggg actctttgga 4741 aagctggaca aggattccat cttgagacag ttgtactgga ccaagggacc caaccaccaa 4801 gacccgtcag agagcatgtt gccacaccag aaccgggcta cccagttgat ggctcttcta 4861 ggcgagtctg cattgcatgg ccaaaatttt tacaagaagg tgagtggcat ggtcatcaag 4921 gagataaaga acggaggaca tgagttctac gtgcccaagt ttgagtccat gtacaagtgg 4981 atgcgcttct cggacttgag cacttgggag ggcgatcgcg atcttgctcc cgattatgtg 5041 aatgaagatg gcgtcgaatg acgctcctcc atcatctgat ggagccggta acctcgttcc 5101 agagagtcat caagaggttt taccgcttgc tcccgtcgcg ggtgctgaac tagcagcgcc 5161 tgtggttggg caaactaata taattgaccc ctggattaaa gaaaactttg ttcaagctcc 5221 ccaaggtgaa tttactgttt ctccaaagaa tgcccctggt gaaattttgg tcaacctgga 5281 acttgggcca aatttgaatc cttacctaga acatttgtct agaatgtaca atgcttatgc 5341 tggtgggata gaggttgaga ttatccttgc aggcaatgcc ttcaccgctg gaaagattct 5401 aattgcggca gtccccccaa atttcccagt tgagagtgtg tcagcatcac aagccaccca 5461 attccctcat gcaattgtgg atgttaggac acttgaaccc gttcggctcc ctctcccaga 5521 tgtgcgatct aatttcttcc actatactac caaggatgaa cccaagatga gattagtgat 5581 ttggctgtat acccctttga gaacaaatgg tagcggagac gactctttca ccgtctctgg 5641 gagattgctg acccgcccgt caatggactt ccaattttct tttctggtcc cccctacagt 5701 ggaaaccaaa actgttctgt tcacagtccc tggtctcacc ccccaggaga tgagcaactc 5761 aagatggccc gcccagatat ctggtatggt ggtgcgcggt aatgagccac aagtggttca 5821 gttccagaat ggtcgctgcc ataccgatgg cacgctattg gggaccacca ctgtgagtga 5881 acagtgcatc gctggctttg ttggcacctc aacgaacact aggtcagcca ctggttccac 5941 tacagagact aggacaggtg atacagatct gtggctgcgg cttgaagagc cgaatgggca 6001 accctatgac atctttggag accaacctgc ccctctagga acacccgatt tccgggcagt 6061 gatagtaggg tttgcatcta gaccacagac acagggatca tatatgaatg aagcctatgt 6121 caacactgtg gactcccact tcgccccagc cacagggaat accaagatca tcctgagaag 6181 gggcggaaca ggacacgtgg gaggaggaca tctctggaaa ttcagacctt ttggagtgga 6241 gggaggcgaa ggcagagtca gttaccagga atatgtattg cccaactatt caggagccac 6301 tgcctccaat cataacctcg cccctcccgt tgccccaaga atgcctggtg agttactgct 6361 cctgtttgag tccgatatgc cggtgtggga cgatggacat ggagctgcac cggctcagaa 6421 gattcactgc ttattgccac aacaatttat cacccatttc tttgatagcc aggcaccagc 6481 actggcggag gccgcactcc tccggtacgt gcatcccgat agtagccgag tcttgtttga 6541 gacaaagctc tatagggagg gcttcatggt ggtgtcggcc ccaactggta ggtttgattt 6601 tccccttgat ggctatttta ggtttgattc ctgggttaat tctttctatg tgctttcccc 6661 cgtgggaagt ggccaaggcc gccggggtag atccaaggtg gtataatggc tgctaacatc 6721 tttgctggta ttgctgggga tattctgggc tctacggttt ccggcttagt caatgccggc 6781 gccaatgcaa taaatcaggg tgtggaattt ggttttaatc aggcccttca ggagaattct 6841 tttagacatg atagggatat gcttgaaaga caggttgcag ccacccggca gctacagagt 6901 gacctcattg ccgtgcgcga gcaggccttg cgccgcggag gcttctctga tgcagatgcc 6961 gctagaggag ctgtgggagg tcccatgaca aaattggttg actggaatgg gacgcgtctt 7021 gccgccccgg gggccatgca caccacagca tactccggga ggttcatcag cgcaccccaa 7081 aggacacccc atacttatgg aacatctaag acccaacaaa caagcactgg gactcccctc 7141 caaagtgaca cttcttcggt ggtgtcacaa cctacaactt ctacgtcctt gtctaggacg 7201 cgaacccaat catgggtctc ggaacaacag aggttgcagc ccttccaccc caacgctctg 7261 caactcacat ggggatctgt cccaagctcc agtggtagca gtgttagatc agcatccact 7321 gtcagtggca cagttcttga ttcttggacc cctgccttta atttgaaaca tcagccgttg 7381 tttgcccgat tccatccccg tggggcaagt aacgtgtaa // LOCUS MK726262 3687 bp RNA linear VRL 01-NOV-2019 DEFINITION Norovirus GIV isolate G19_023 nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds. ACCESSION MK726262 VERSION MK726262.1 KEYWORDS . SOURCE Norovirus GIV ORGANISM Norovirus GIV Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3687) AUTHORS Strubbia,S., Phan,M.V., Schaeffer,J., Koopmans,M., Cotten,M. and Le Guyader,S. TITLE Optimisation of agnostic metagenomic approaches to characterise human enteric viruses in sewage JOURNAL Unpublished REFERENCE 2 (bases 1 to 3687) AUTHORS Le Guyader,S. and Strubbia,S. TITLE Direct Submission JOURNAL Submitted (01-APR-2019) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES 44311, France COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.12.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3687 /organism="Norovirus GIV" /mol_type="genomic RNA" /isolate="G19_023" /isolation_source="sewage" /db_xref="taxon:262897" /country="France: Nantes" /collection_date="05-May-2014" /note="genotype: GIV.1-GIV.1" gene <1..1319 /gene="ORF1" CDS <1..1319 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="QBR53300.1" /translation="PRGRPVKPHLLQAAVKTIENVLEQTIDPPTPWTYAQACQSLDKT TSSGWPHHVQKNTHWNGEAFTGPLADQASKANLMYEQGKSMTPQYTAALKDELVKPDK VYKKVKKRLLWGADLGTMVRCARAFGPFTDALKKCCTQLPVKVGLNINEEGPIIFEKH AQYELHYDADYSRWDSTQQREVLAAALGIMTKFTAEPQLASVVAEDLISPSMLDVGDY VVQVNEGLPSGVPCTSQLNSIAHWIITLTSMAEATGLDPDIVQANSYFSFYGDDEIVS TDIKFNPEVLTLKLKAIGLVPTRPDKTEGPLVVSNKLEGLTFLRRTITRDKVGFFGRL DKDSILRQMYWTKGPNHQDPSESMLPHQNRATQLMALLGESALHGQNFYKKISGMVIK EVKNGGHEFYVPKFESMYKWMRFSDLSTWEGDRDLAPDFVNEDGVE" mat_peptide <1..1316 /gene="ORF1" /product="RdRp" gene 1300..2970 /gene="ORF2" CDS 1300..2970 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QBR53301.1" /translation="MKMASSDAAPSTDGAGNLVPESQQEVLPLAPVAGAALAAPVVGQ TNIIDPWIKENFVQAPQGEFTVSPKNSPGEILVNLELGPKLNPYLDHLSRMYNSYAGG IDVMVVLAGNAFTAGKVLIAAIPPNFPVEGVSASQATQFPHVIIDVRTLDPVRLPLPD VRSTFFHYTNDTEPKMRLVIWLYTPLRTNGSGDDSFTVSGRILTRPSQDFEFAFLIPP TVETKTTPFSVPGFSVQEMSNSRWPAAISAMVVRGNEPQVVQFQNGRAHLDGMLLGTT PVSPNYIASYRGISTGNSRSASPEADERAVGSFDVWVRLQEPDGQPYDIFGKQPAPIG TPDFKAVIVGFAARPLTSGSYANEAYVNTTASDYAPATGNMRFTVRNGGTGHISANKY WEFKSFGVEGERHTDIQYQEYELPDYSGQVASNHNLAPPVAPRMPGESLLLFQSNMPV WDDGHGESTPKKIHCLLPQEFIGHFFDKQAPSLGDAALLRYVNQETNRVLFECKLYRD GYITVAASSGLLDFPLDGFFRFDSWVSSFYILSPVGSGQGRRGRVRFQ" gene 2970..>3687 /gene="ORF3" CDS 2970..>3687 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QBR53302.1" /translation="MASSIMAGIAGDVLGSVVGGLVGAGANAINQSVEFGYNQALQSN AFQHDKDMLALQVAATRQLQSDLINLREQVLRKGGFSDTDAARGAIGAPMSRLVDWNG TRLSAPGSMHTTSYSGRFVGTTRQQPHFTPPPQTNHVRIDDEVSSVSSLPTAATSVPS SRTADWVHNQRQLSSWGSSASQHSQLEPFHPNALRVAWGSTPSSSSRASTVDGSVIDS WTPAFNLKHQPFFARFHPRGA" ORIGIN 1 ctcctcgtgg gagaccagtc aaaccccacc tcttgcaggc cgcagtcaag acaatcgaga 61 acgtgctgga acagaccatt gaccccccaa caccatggac atatgcccag gcttgccagt 121 cgcttgacaa gacaacgtcg agtggctggc cccaccatgt gcagaaaaac acccattgga 181 atggtgaagc atttacagga cccttggccg accaagccag caaggccaat ttgatgtatg 241 aacaagggaa gtccatgacc ccccagtaca ctgctgccct taaggatgaa ctagtgaaac 301 cagacaaggt gtacaaaaag gtcaagaaaa ggctgctgtg gggtgcagat ctcggaacca 361 tggtccggtg cgccagagca ttcggcccat tcactgacgc gcttaagaag tgctgcaccc 421 aacttccagt caaagttgga cttaacatta atgaagaggg acccatcatc tttgagaaac 481 acgcccaata tgagctccac tatgatgcag attattcgcg gtgggattcc acccagcaac 541 gggaggtcct cgccgccgca cttggcatca tgacaaaatt cactgctgag ccacaactgg 601 cctccgttgt ggcagaagac ttgatttccc caagtatgct tgatgttggc gactacgtcg 661 tccaagtcaa tgaagggcta ccctctggtg tcccctgcac ctcacagtta aacagtattg 721 cccattggat catcaccctt acatccatgg ctgaggccac tggcctggat cctgacatcg 781 tccaggctaa cagctacttc tccttctatg gtgatgatga aattgtgtca acagacataa 841 aattcaatcc agaggtcctc accctgaaac ttaaagcaat tggccttgtc ccaacccgcc 901 cagataagac agaaggccca ttggtggtgt caaacaaatt agaaggtctg acttttctga 961 ggcgcaccat aactagagac aaagtgggct tctttggtcg gttggataag gattccatcc 1021 tcaggcaaat gtactggacc aagggcccga accatcagga cccatctgaa agcatgttac 1081 cccaccagaa tcgcgccaca caattgatgg ccctgttggg cgagtcagca ctccatggtc 1141 aaaacttcta taaaaagatt agtggcatgg taatcaaaga agtgaagaat ggtgggcatg 1201 agttctatgt gccaaagttt gagtccatgt acaagtggat gcggttctca gacttgagca 1261 cttgggaggg ggatcgcgat ctcgctcccg attttgtgaa tgaagatggc gtcgagtgac 1321 gctgctccat ctacggatgg tgcgggcaac ctcgttccag agagtcaaca agaggtgttg 1381 cccctcgccc cagtcgcagg cgctgcgtta gcggcacctg tggtggggca aacaaatata 1441 attgacccct ggattaaaga aaattttgtt caagcccccc agggtgagtt tactgtctca 1501 cctaaaaatt ctcctggtga aattttagtt aatttggaat tgggacccaa gctcaacccc 1561 tatctagacc acctttcacg catgtacaat tcatatgctg gtggcataga tgtcatggtg 1621 gtgttggcgg gcaacgcctt cacagccggc aaggttttaa tagcagctat ccccccaaat 1681 ttcccagtgg aaggagtgtc cgcttcacag gccactcaat tcccccatgt gattatagat 1741 gttaggacac ttgaccctgt gcggctcccc ctcccggatg tgcgatccac gttcttccat 1801 tatactaatg atactgaacc aaagatgagg ttagtcattt ggctttacac cccacttaga 1861 actaatggca gtggtgatga ctctttcacc gtctctgggc gcatactcac aaggccctcc 1921 caggactttg agttcgcttt ccttattccc ccaacagtgg aaacaaagac aacccccttt 1981 tcagtgccag gcttctcggt gcaggaaatg tccaactcaa ggtggccagc tgccatctcc 2041 gcaatggtcg tccgtgggaa tgagccccaa gttgttcagt tccagaatgg cagggcccac 2101 ttggatggta tgctgcttgg tacgacacct gtgtcgccca attacatagc atcctaccga 2161 ggcatttcca ctggcaactc tcgttctgct tcccctgagg ccgacgagag ggccgttggt 2221 agctttgatg tgtgggtccg cttacaagaa cccgatggcc aaccctatga catctttggt 2281 aagcagccag ccccaattgg cacccctgat ttcaaggccg tgatagttgg ctttgcagct 2341 aggcccctca catccgggtc ctacgcaaat gaagcgtatg ttaacaccac agccagtgac 2401 tacgccccag ccactggtaa tatgcgcttc acagtcagga acggcgggac cgggcacata 2461 tctgcaaaca aatactggga gtttaaatca tttggtgttg aaggagaaag gcacactgac 2521 atccagtacc aggagtatga gcttcccgat tattctggtc aagttgcttc caaccataat 2581 ctggcccccc ctgtagcccc acgcatgcct ggtgagtcac tattgctttt ccaatcaaat 2641 atgcctgtgt gggacgatgg gcatggagag tccacaccca agaagattca ttgcctattg 2701 ccacaggagt ttattggcca cttctttgat aagcaagccc cctctctagg tgatgctgca 2761 ctacttaggt atgtcaacca ggagacaaat agagtgttgt ttgagtgtaa actttatagg 2821 gatggctaca tcacagttgc tgcatcatca ggattactag atttcccctt ggatggcttc 2881 tttaggtttg attcttgggt tagttctttt tacattttat cccccgtggg aagcggccaa 2941 ggccgcaggg gtagagtgag gtttcaataa tggcttctag cattatggca ggtatagcag 3001 gcgatgtact aggctcagtt gtgggtgggt tagttggagc cggtgctaac gccataaacc 3061 aatctgttga atttgggtac aaccaagcac tgcaatctaa tgctttccaa catgacaaag 3121 acatgcttgc cttacaggtg gccgcgaccc gtcagctaca gtcggatttg atcaacttgc 3181 gcgagcaggt tcttcgcaag ggtggtttct ccgacactga tgcggcgcgt ggagctattg 3241 gtgcccccat gtcacgcctt gtggattgga acggcacaag gttgtccgcc ccgggttcca 3301 tgcacacaac atcatactcg ggccggtttg ttggcacaac cagacagcaa ccccacttca 3361 cccctcctcc acagaccaat catgttagaa ttgatgatga agtttcttct gtctcttcct 3421 tgcccacagc ggcgacctca gttcctagtt ctaggacagc tgattgggtt cataatcaaa 3481 ggcagctatc ctcctggggt tctagtgcat cccaacattc acagctggaa ccctttcacc 3541 caaacgctct gagagtggct tgggggtcta ctccaagttc ctcctccaga gcgtccactg 3601 tggatggttc agtcattgat tcatggaccc ccgcttttaa tttgaagcat cagcctttct 3661 ttgctcgctt tcacccgagg ggtgctt // LOCUS NC_044855 7419 bp RNA linear VRL 15-OCT-2019 DEFINITION Norovirus GIV strain Hu/US/2016/GIV.NA1[PNA1]/WI7002, complete genome. ACCESSION NC_044855 VERSION NC_044855.1 DBLINK BioProject: PRJNA485481 KEYWORDS RefSeq. SOURCE Norovirus GIV ORGANISM Norovirus GIV Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7419) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-SEP-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 7419) AUTHORS Collins,N., Aswath,K., Barclay,L. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (28-SEP-2016) NCIRD/DVD/GRVLB, CDC, 1600 Clifton Rd NE, Atlanta, GA 30329, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to KX907728. ##Assembly-Data-START## Assembly Method :: Geneious v. 8 Sequencing Technology :: Illumina ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7419 /organism="Norovirus GIV" /mol_type="genomic RNA" /strain="Hu/US/2016/GIV.NA1[PNA1]/WI7002" /host="Homo sapiens" /db_xref="taxon:262897" /country="USA" /collection_date="11-May-2016" /genotype="GIV.NA1[PNA1]" /note="Genotype was updated by PMID: 31483239" 5'UTR 1..3 gene 4..5061 /gene="ORF1" /locus_tag="F7P59_gp1" /db_xref="GeneID:41854845" CDS 4..5061 /gene="ORF1" /locus_tag="F7P59_gp1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="YP_009700099.1" /db_xref="GeneID:41854845" /translation="MKMASNDASVASSSTTTATNNDKTPTNTGGVFSNLRVGIKKALN SKQGPLELRDGSNTRPPDIQHSEGQVRFNAKDETVQGIPDLTTAPIPTIRQAKCVPPM SEREVRVAQEPQTGSLLEMYDGSFYHYAIYIENGLVAGINRPSKALTTATVDVEPIGL WWRVVYTPPFSVSTSALYHLQGEKFPYNAFDNNCYNFCCQVLELDDCWMRRRYVQRTS GFFDPYQSWNPKPSQYTADSKLERVGDALLTALGALFSKPIKNIVGKLKPLNFLNLLS ACDWTFAGIVETAILIAELFDIYWDPPDVTNFLMPLLDDFELQGPEDVAAEIVPIILG GIGMVVGFTAEKAGRLLSSAAATLRATKELGNYGLEIVKLIMKWFFPKKESDMNSMVR NIEDAVLDLESVENNHITHLLKDKENMAIFLRTLDLEEEKARKLSTKAASPDIVSSVN ALLARIAAVRSLAFKAKEEMCARQRPVVVMISGRPGIGKTHYARDLASRISKLLTTDG RVGLVPRNGVDHWDAYRGEPVVVWDDYGMGNIVKDAMMLQELADTCPVTLNCDRIENK GKMFESDVIVLTTNSPNPTPMDYVNMEAVARRVDFLVYADSPEIEKAKRDFPGDPKAW KPHFKDDHSHLNLLLAPQGGFDRNGNTPHGKGQVKNITPNGLVARAVALAVERRDDFQ LQGGEPQTYNFDSSQVAAFRKLAADNKYGLAETLRVGNKLRSVTTIEGFKKAVGDVKF KKCRIIWKGVTYDLESDGKGSVKIDRVQSQMVQTTGEIHQAVLRLRQARVRYYVMTAQ NVVYGLLQAAGAAFVLNRIFRRAENPFSRMIKVEGEDDDPHAAPPVPTTPKVEIVQAD IEEEGKKKGKNKQGRGRKHTAFSSKGLSDEEYEEFKQIREERGGKYSIQEYLEDRDRF EEEVAYAQACGGDCDDIEIGRIRNSIFRPSRKQRKEERVKLGLVTGTEIRKRKPDDFQ PKGKLWADDDRTVDYHEKLDFEAPASIWARVVQLGTGWGFWVSPNLLITSTHVIPKGV EELFGVPIQQVQVHKCGEFTRLRFPKMIRPDVSGMILEDGAPEGVVCSILVKRPTGEC LPLAVRMGTQATMKIQGKVVSGQLGMLLTGSNAKNMDLGTTPGDCGCPYVYKRGNDYI VVGVHTAAGRGGNTVICAVQTSDGEAVLEGNSDNGTYCGAPIVSKGRAPQLSTKTKFW RSSVEPLPPGTYEPAYLGGRDPRVNDGPSLYQVMRDQLKHFTAPRGRPVKPHLLQAAV KTIENTLEQTIDPPQPWSYSQACQSLDKSTSSGWPHHVQKNTHWNGESFTGPLADQAS RANLMYEQAKSMTPQYTAALKDELVKPEKVYSKVKKRLLWGADLGTMVRCARAFGPFT DAIKKCCVSLPIKVGLNINEEGPIVFEKHSQYEFHYDADYSRWDSTQQREVLAAALGI MTKFTAEPHLAAVVAEDLLAPSMLDVGDYVVQVNEGLPSGVPCTSQLNSMAHWILTLT SLAEATGLDPDIIQANSYFSFYGDDEIVSTDVKFNPEVLTLKLKAVGLVPTRPDKTEG PLIVSRKLEGLTFLRRTITRDKAGLFGKLDKDSILRQLYWTKGPNHQDPSESMLPHQN RATQLMALLGESALHGQNFYKKVSGMVIKEIKNGGHEFYVPKFESMYKWMRFSDLSTW EGDRDLAPDYVNEDGVE" mat_peptide 4..960 /gene="ORF1" /locus_tag="F7P59_gp1" /product="p48" /protein_id="YP_009701454.1" mat_peptide 961..2055 /gene="ORF1" /locus_tag="F7P59_gp1" /product="NTPase" /protein_id="YP_009701455.1" mat_peptide 2056..2583 /gene="ORF1" /locus_tag="F7P59_gp1" /product="p22" /protein_id="YP_009701456.1" mat_peptide 2584..2985 /gene="ORF1" /locus_tag="F7P59_gp1" /product="VPg" /protein_id="YP_009701457.1" mat_peptide 2986..3528 /gene="ORF1" /locus_tag="F7P59_gp1" /product="Pro" /protein_id="YP_009701458.1" mat_peptide 3529..5058 /gene="ORF1" /locus_tag="F7P59_gp1" /product="RdRp" /protein_id="YP_009701459.1" gene 5042..6706 /gene="ORF2" /locus_tag="F7P59_gp2" /db_xref="GeneID:41854843" CDS 5042..6706 /gene="ORF2" /locus_tag="F7P59_gp2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="YP_009700100.1" /db_xref="GeneID:41854843" /translation="MKMASNDAPPSSDGAGNLVPESHQEVLPLAPVAGAELAAPVVGQ TNIIDPWIKENFVQAPQGEFTVSPKNAPGEILVNLELGPNLNPYLEHLSRMYNAYAGG IEVEIILAGNAFTAGKILIAAVPPNFPVESVSASQATQFPHAIVDVRTLEPVRLPLPD VRSNFFHYTTKDEPKMRLVIWLYTPLRTNGSGDDSFTVSGRLLTRPSMDFQFSFLVPP TVETKTVLFTVPGLTPQEMSNSRWPAQISGMVVRGNEPQVVQFQNGRCHTDGTLLGTT TVSEQCIAGFVGTSTNTRSATGSTTETRTGDTDLWLRLEEPNGQPYDIFGDQPAPLGT PDFRAVIVGFASRPQTQGSYMNEAYVNTVDSHFAPATGNTKIILRRGGTGHVGGGHLW KFRPFGVEGGEGRVSYQEYVLPNYSGATASNHNLAPPVAPRMPGELLLLFESDMPVWD DGHGAAPAQKIHCLLPQQFITHFFDSQAPALAEAALLRYVHPDSSRVLFETKLYREGF MVVSAPTGRFDFPLDGYFRFDSWVNSFYVLSPVGSGQGRRGRSKVV" gene 6706..7419 /gene="ORF3" /locus_tag="F7P59_gp3" /db_xref="GeneID:41854844" CDS 6706..7419 /gene="ORF3" /locus_tag="F7P59_gp3" /codon_start=1 /product="VP2" /protein_id="YP_009700101.1" /db_xref="GeneID:41854844" /translation="MAANIFAGIAGDILGSTVSGLVNAGANAINQGVEFGFNQALQEN SFRHDRDMLERQVAATRQLQSDLIAVREQALRRGGFSDADAARGAVGGPMTKLVDWNG TRLAAPGAMHTTAYSGRFISAPQRTPHTYGTSKTQQTSTGTPLQSDTSSVVSQPTTST SLSRTRTQSWVSEQQRLQPFHPNALQLTWGSVPSSSGSSVRSASTVSGTVLDSWTPAF NLKHQPLFARFHPRGASNV" ORIGIN 1 tgaatgaaga tggcgtctaa cgacgcttcc gttgctagta gcagcactac aactgccaca 61 aacaacgaca aaacccccac caacactggg ggtgtcttct ccaacctgag ggttggaatt 121 aagaaggccc tcaattcaaa acaggggcca ctggagctta gggatggctc caataccaga 181 cctcccgata tccaacacag tgagggccag gttcggttta atgccaagga cgaaacagtc 241 caagggatcc cggacctaac aacggcgccg atacccacca tccggcaggc caagtgtgtc 301 cctcccatgt cagagagaga ggttcgtgtg gcccaagaac cacaaaccgg gtcactgctg 361 gagatgtacg atgggtcttt ctaccactac gccatttaca ttgaaaatgg attggtggct 421 ggtataaatc gaccctctaa ggccctaaca actgccactg ttgatgttga gcccatagga 481 ttgtggtggc gggtggtcta caccccgcca ttctctgtct ctacctcagc actgtaccac 541 ctccaagggg aaaagttccc ttataatgct tttgacaaca actgttacaa cttctgttgc 601 caagttttgg aactcgacga ctgctggatg agaaggcggt atgtacagag gacgtcgggt 661 ttcttcgacc cataccagag ctggaaccca aagccgtcgc agtacacagc tgactcaaaa 721 ctggagagag tgggcgacgc cctcctcacc gccttaggag ccttgttctc aaaacccatt 781 aagaacatag ttggtaaact caaaccattg aatttcttga acttattgtc ggcctgcgat 841 tggacattcg ctggcattgt ggagacggcg atcttaatag cagaactgtt tgatatctac 901 tgggatccgc ctgatgtcac taacttcttg atgcctctgc tagatgactt tgaactccaa 961 ggaccagaag acgtggcagc tgagatagtc ccgataatat taggtggcat aggaatggtg 1021 gtggggttca cagcagagaa agctggtcgc cttttgtcgt ctgcggctgc cactctgaga 1081 gccactaaag aactcggcaa ctatggactg gagattgtta aattaatcat gaagtggttc 1141 ttcccaaaga aggaaagtga catgaattcc atggtcagga atattgaaga tgctgtgctg 1201 gacctagagt ctgtagagaa caaccatatc acgcaccttc ttaaggacaa agaaaacatg 1261 gccatctttc tgcggacact agatctagag gaagagaaag ccagaaaact ctccaccaag 1321 gcggcttctc ctgacatagt ctcatctgtg aacgccctcc tggcgcggat agccgcagtt 1381 aggtcactgg cttttaaagc caaagaggag atgtgtgcca gacaaaggcc tgtggttgta 1441 atgatatcag ggaggccagg catagggaag actcactatg ccagagatct tgcttcccgc 1501 atctcaaaac tgctcaccac tgatggaagg gtcggtcttg tcccccgtaa cggggttgat 1561 cactgggacg cctatagagg agaaccagtg gtagtttggg atgattatgg tatgggtaac 1621 atcgtgaagg acgcaatgat gttacaagag ttggcggaca cttgcccggt caccctgaat 1681 tgtgaccgaa tagagaacaa gggcaagatg tttgagagcg atgtcatcgt tctcaccacc 1741 aattcaccaa acccaacacc catggattat gtcaacatgg aggctgttgc caggagagtt 1801 gacttcttgg tctatgcgga ttccccggag atcgagaaag ccaagaggga tttcccagga 1861 gatcccaagg cctggaaacc acacttcaag gatgatcact cacatctcaa cctcttgctg 1921 gccccccagg gaggctttga tcggaacggc aacacacccc atgggaaggg gcaggtcaag 1981 aacataacac caaatggtct cgttgcccgt gcagtcgcat tagcagtgga aaggagggac 2041 gacttccagc tccagggggg agagccgcag acctataatt ttgactcctc ccaagttgca 2101 gccttcagga aactggcagc agacaacaag tacggccttg ctgagactct tcgcgttggg 2161 aacaaactga ggagtgtaac caccattgaa ggttttaaga aggctgttgg agatgtcaaa 2221 tttaagaagt gcaggatcat ctggaagggc gtgacctacg atctagagtc agatgggaag 2281 ggctctgtta agatcgacag agtgcagtct cagatggtcc agacaaccgg cgagatacac 2341 caggcagtcc tgcggctgcg acaggccaga gtcagatact atgtcatgac cgcccagaat 2401 gtcgtctatg ggctacttca agccgcaggt gcggcgtttg tcctgaacag gatattcagg 2461 agagccgaga accccttttc tcgcatgatc aaggtcgaag gggaggatga tgacccccac 2521 gccgccccac ccgtgccaac aactcctaaa gttgagatag tccaggctga tattgaggag 2581 gagggcaaga agaaaggaaa gaataaacag gggcgcggtc gcaagcatac cgcgttctcg 2641 tctaaaggcc tcagtgatga agagtatgag gaattcaaac aaataagaga agaaaggggt 2701 ggcaaatatt ccatacagga gtatttggaa gaccgcgacc ggttcgaaga agaggtcgct 2761 tatgcccaag cttgtggtgg tgactgtgac gacatcgaga taggccgcat cagaaattcc 2821 atctttcgcc ccagcaggaa acagaggaaa gaggagagag ttaaacttgg tctggtgact 2881 ggaactgaga tcaggaaaag aaagccagat gacttccaac ctaaaggaaa actgtgggct 2941 gatgatgaca gaactgtgga ttaccatgaa aagctagact ttgaagcccc tgcatccatc 3001 tgggcacgag tggtgcagct tgggacagga tggggatttt gggtatcacc caatctcctc 3061 ataacatcga cacacgtcat ccccaaaggg gtcgaggaac ttttcggagt cccaatccag 3121 caagtccagg tgcacaaatg tggtgaattc acccgcttga ggtttccaaa aatgatcagg 3181 cctgatgttt ctggaatgat actggaagat ggcgccccag agggggtggt ttgcagtata 3241 ctggtcaaga ggccaacagg ggaatgcttg cccttggcag tcagaatggg cacccaagct 3301 acaatgaaaa ttcaaggtaa ggtggtttca ggccagttgg gcatgctact cacagggtcc 3361 aacgctaaga acatggacct aggaacaacc cctggagact gtggatgtcc ctatgtgtac 3421 aaaagaggca acgactacat agtcgttgga gtgcacaccg cggctggacg tggagggaac 3481 acagtcattt gcgccgttca gacgagtgat ggagaggcgg tgctggaagg gaattctgac 3541 aatggaacat actgtggggc acccattgtc tcaaaggggc gagcccctca actttcaact 3601 aaaacaaaat tctggaggag ctcagttgaa ccattaccac ctggtaccta tgagcctgct 3661 taccttggag gtcgcgaccc tagggttaac gacgggccat cactttacca ggttatgaga 3721 gaccaactta aacatttcac agctcctcgt gggcgccctg taaagccaca cttgctccag 3781 gctgctgtca agacaattga gaacacgctt gaacagacca tagatccgcc ccagccatgg 3841 agctattccc aagcatgcca gtcgctagac aagtcaacgt cgagtggctg gccccatcac 3901 gtccagaaga atacacactg gaatggtgag tcattcacag gccccctggc tgatcaggct 3961 agcagggcga accttatgta tgaacaggca aagtccatga cacctcagta cacagcagca 4021 ctcaaagatg aactagtaaa acctgagaaa gtgtatagca aggttaagaa acggctcctg 4081 tggggagctg atctaggcac tatggtgagg tgtgctagag cgtttggacc attcacagac 4141 gcgattaaga aatgctgtgt ctccctgcca attaaggtcg ggcttaacat caatgaggag 4201 ggaccaattg tgtttgagaa gcattcccag tatgagttcc actacgatgc agactactca 4261 cgctgggatt ccactcaaca gagagaggtt ttggccgcag cactggggat tatgacaaag 4321 ttcacagctg agccacactt ggccgcggtg gtggcagaag acctcctggc gcccagcatg 4381 ctggatgtgg gagattatgt ggttcaagtc aatgagggct taccatctgg ggttccctgt 4441 acatcacagt taaacagcat ggcacactgg atcctcacct taacatcgct ggcagaggcc 4501 acaggcttgg acccagatat cattcaagca aatagctact tctcatttta tggtgatgat 4561 gagatagtgt caactgatgt caaattcaac cccgaggtcc tgacgttgaa gctgaaggct 4621 gtcggcctgg tcccaacgag gccagacaaa acagaaggac cactcattgt ctccagaaaa 4681 ctggagggcc tcaccttttt gaggagaaca ataaccagag ataaggcggg actctttgga 4741 aagctggaca aggattccat cttgagacag ttgtactgga ccaagggacc caaccaccaa 4801 gacccgtcag agagcatgtt gccacaccag aaccgggcta cccagttgat ggctcttcta 4861 ggcgagtctg cattgcatgg ccaaaatttt tacaagaagg tgagtggcat ggtcatcaag 4921 gagataaaga acggaggaca tgagttctac gtgcccaagt ttgagtccat gtacaagtgg 4981 atgcgcttct cggacttgag cacttgggag ggcgatcgcg atcttgctcc cgattatgtg 5041 aatgaagatg gcgtcgaatg acgctcctcc atcatctgat ggagccggta acctcgttcc 5101 agagagtcat caagaggttt taccgcttgc tcccgtcgcg ggtgctgaac tagcagcgcc 5161 tgtggttggg caaactaata taattgaccc ctggattaaa gaaaactttg ttcaagctcc 5221 ccaaggtgaa tttactgttt ctccaaagaa tgcccctggt gaaattttgg tcaacctgga 5281 acttgggcca aatttgaatc cttacctaga acatttgtct agaatgtaca atgcttatgc 5341 tggtgggata gaggttgaga ttatccttgc aggcaatgcc ttcaccgctg gaaagattct 5401 aattgcggca gtccccccaa atttcccagt tgagagtgtg tcagcatcac aagccaccca 5461 attccctcat gcaattgtgg atgttaggac acttgaaccc gttcggctcc ctctcccaga 5521 tgtgcgatct aatttcttcc actatactac caaggatgaa cccaagatga gattagtgat 5581 ttggctgtat acccctttga gaacaaatgg tagcggagac gactctttca ccgtctctgg 5641 gagattgctg acccgcccgt caatggactt ccaattttct tttctggtcc cccctacagt 5701 ggaaaccaaa actgttctgt tcacagtccc tggtctcacc ccccaggaga tgagcaactc 5761 aagatggccc gcccagatat ctggtatggt ggtgcgcggt aatgagccac aagtggttca 5821 gttccagaat ggtcgctgcc ataccgatgg cacgctattg gggaccacca ctgtgagtga 5881 acagtgcatc gctggctttg ttggcacctc aacgaacact aggtcagcca ctggttccac 5941 tacagagact aggacaggtg atacagatct gtggctgcgg cttgaagagc cgaatgggca 6001 accctatgac atctttggag accaacctgc ccctctagga acacccgatt tccgggcagt 6061 gatagtaggg tttgcatcta gaccacagac acagggatca tatatgaatg aagcctatgt 6121 caacactgtg gactcccact tcgccccagc cacagggaat accaagatca tcctgagaag 6181 gggcggaaca ggacacgtgg gaggaggaca tctctggaaa ttcagacctt ttggagtgga 6241 gggaggcgaa ggcagagtca gttaccagga atatgtattg cccaactatt caggagccac 6301 tgcctccaat cataacctcg cccctcccgt tgccccaaga atgcctggtg agttactgct 6361 cctgtttgag tccgatatgc cggtgtggga cgatggacat ggagctgcac cggctcagaa 6421 gattcactgc ttattgccac aacaatttat cacccatttc tttgatagcc aggcaccagc 6481 actggcggag gccgcactcc tccggtacgt gcatcccgat agtagccgag tcttgtttga 6541 gacaaagctc tatagggagg gcttcatggt ggtgtcggcc ccaactggta ggtttgattt 6601 tccccttgat ggctatttta ggtttgattc ctgggttaat tctttctatg tgctttcccc 6661 cgtgggaagt ggccaaggcc gccggggtag atccaaggtg gtataatggc tgctaacatc 6721 tttgctggta ttgctgggga tattctgggc tctacggttt ccggcttagt caatgccggc 6781 gccaatgcaa taaatcaggg tgtggaattt ggttttaatc aggcccttca ggagaattct 6841 tttagacatg atagggatat gcttgaaaga caggttgcag ccacccggca gctacagagt 6901 gacctcattg ccgtgcgcga gcaggccttg cgccgcggag gcttctctga tgcagatgcc 6961 gctagaggag ctgtgggagg tcccatgaca aaattggttg actggaatgg gacgcgtctt 7021 gccgccccgg gggccatgca caccacagca tactccggga ggttcatcag cgcaccccaa 7081 aggacacccc atacttatgg aacatctaag acccaacaaa caagcactgg gactcccctc 7141 caaagtgaca cttcttcggt ggtgtcacaa cctacaactt ctacgtcctt gtctaggacg 7201 cgaacccaat catgggtctc ggaacaacag aggttgcagc ccttccaccc caacgctctg 7261 caactcacat ggggatctgt cccaagctcc agtggtagca gtgttagatc agcatccact 7321 gtcagtggca cagttcttga ttcttggacc cctgccttta atttgaaaca tcagccgttg 7381 tttgcccgat tccatccccg tggggcaagt aacgtgtaa // LOCUS NC_029647 7527 bp RNA linear VRL 09-AUG-2019 DEFINITION Norovirus GIV, complete sequence. ACCESSION NC_029647 VERSION NC_029647.1 DBLINK BioProject: PRJNA485481 KEYWORDS RefSeq. SOURCE Norovirus GIV ORGANISM Norovirus GIV Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7527) AUTHORS Eden,J.S., Hewitt,J., Lim,K.L., Boni,M.F., Merif,J., Greening,G., Ratcliff,R.M., Holmes,E.C., Tanaka,M.M., Rawlinson,W.D. and White,P.A. TITLE The emergence and evolution of the novel epidemic norovirus GII.4 variant Sydney 2012 JOURNAL Virology 450-451, 106-113 (2014) PUBMED 24503072 REFERENCE 2 (bases 1 to 7527) AUTHORS Eden,J.S., Lim,K.L. and White,P.A. TITLE Complete Genome of the Human Norovirus GIV.1 Strain Lake Macquarie Virus JOURNAL J. Virol. 86 (18), 10251-10252 (2012) PUBMED 22923808 REFERENCE 3 (bases 1 to 7527) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-MAR-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 7527) AUTHORS Eden,J.-S., Lim,K.-L. and White,P.A. TITLE Direct Submission JOURNAL Submitted (01-FEB-2012) School of Biotechnology and Biomolecular Sciences, University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to JQ613567. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7527 /organism="Norovirus GIV" /mol_type="genomic RNA" /strain="Hu/GIV.1/LakeMacquarie/NSW268O/2010/AU" /host="Homo sapiens" /db_xref="taxon:262897" /country="Australia" /collection_date="Dec-2010" /genotype="GIV.1" 5'UTR 1..4 gene 5..5068 /gene="ORF1" /locus_tag="NoVGIV_gp1" /db_xref="GeneID:27042438" CDS 5..5068 /gene="ORF1" /locus_tag="NoVGIV_gp1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="YP_009237903.1" /db_xref="GeneID:27042438" /translation="MKMASNDASVANSNSKTIAANNTTTPKQGGVFANMKIGLKKVLE PKSETPTVRPKDVGKPGGTSPPDDPPGVTIKYDAQSDTIEGLPNLSTVPQPEARQVKC VPPMAEREVKNAAEPQTGSLLEMYDGSFYHYAIYIENGLVAGINRPSKALTTATVDVE PIGLWWRVVYTPPFSVSTSALYHLQGEKFPYNAFDNNCYNFCCQVLELDDCWMRRKFV QRTTGFFDPYQRWNPKPSQYVADSKLERVGDALLTALGALFSKPIKNIIGKLKPLNFL NLLSSCDWTFPSIVETIILIAELFDVYWEPPDVTGFLMPLLDDYEFQGPEDLAAEIVP LILGGIGMVVGFTAEKAGKLLSSAAATLRATRELGNYGLEIVKLVMKWFFPKKESDMN AMVRNIEDAVLDLEAVESNHITHLLKDKENMAVFLRTLDLEEEKARKLSTKAASPNII ASVNALLARIAAVRSLAFKAKEEMCARQRPVVVMLSGRPGIGKTHYARELASRISKLL SSDGRVGLVPRNGVDHWDSYRGEPVVVWDDYGMGNIIKDAMMLQELADTCPLTLNCDR IENRGKMFESDVIVLTTNSPNPSPMDYVNMEAVARRVDFLVYAESPDVEKAKRDFPGD PKAWKPFFKDDHSHLVLTLAPQGGFDKSGNTPHGKGMTRNITPNGLVARAVALAVERK DEFQLQGPDPITYNFDSSQVAAFRKLAADNKYGLAETLRVGNKLRNVTTIEGFKKAVG DVRFKKCRIIWKGVTYDLESDGKGSVTIDRVQSQMVQTTGEIHQAVLRLRQARVRYYV MTAQNVTYGLLQAAGAAFVLNRIFRRAENPFSRLVKVEEDKDEDARMAIIPKKVEIVE SNLEEEGKKKGKNKQGRGRKHTAFSSKGLSDEEYEEFKQLREEKGGKYSIQEYLEDRD RFEEEVAYAQACGGDCDDIEISRIRNSIFRPSRKQRKEERVKLGLVTGSEIRKRKPDD FQPKGKLWADDERTVDYNEKLDFEAPASIWARIVQLGTGWGFWVSPNLLITSTHVIPK GVEELFGVPIKQVQIHRCGEFTRLRFSKMIRPDVTGMILEDGAPEGVVCSILVKRPTG ECLPLAVRMGTQATMKIQGKVVSGQLGMLLTGSNAKNMDLGTTPGDCGCPYVYKRGND YVVVGVHTAAGRGGNTVICAVQTGDGEAVLEGNTDNGTYCGAPIVSKGNAPQLSSKTK FWRSSVEPLPPGTFEPAYLGGRDPRVDGGPSLYQVMRDQLKHFTAPRGRPVKPHLLQA AVKTIENVLEQTIDPPTPWTYAQACQSLDKTTSSGWPHHVQKNTHWNGEAFTGPLADQ ASKANLMYEQGKSMTPQYTAALKDELVKPDKVYKKVKKRLLWGADLGTMVRCARAFGP FTDALKKCCTQLPVKVGLNINEEGPIIFEKHAQYELHYDADYSRWDSTQQREVLAAAL GIMTKFTAEPQLASVVAEDLISPSMLDVGDYVVQVNEGLPSGVPCTSQLNSIAHWIIT LTSMAEATGLDPDIVQANSYFSFYGDDEIVSTDIKFNPEVLTLKLKAIGLVPTRPDKT EGPLVVSNKLEGLTFLRRTITRDKVGFFGRLDKDSILRQMYWTKGPNHQDPSESMLPH QNRATQLMALLGESALHGQNFYKKISGMVIKEVKNGGHEFYVPKFESMYKWMRFSDLS TWEGDRDLAPDFVNEDGVE" mat_peptide 5..973 /gene="ORF1" /locus_tag="NoVGIV_gp1" /product="p48" /note="N-terminal leader p48; 2A2-2B-like membrane protein; distant homolog of H-rev107-like parechovirus 2a2, a putative regulator of cell proliferation; the c-terminal membrane-binding portion contributes to the Golgi disassembly and, therefore, functionally similar to the picornavirus 2B protein" /protein_id="YP_009238493.1" mat_peptide 974..2068 /gene="ORF1" /locus_tag="NoVGIV_gp1" /product="NTPase" /note="2C-L; probable ortholog of the 2C protein of picornaviruses; the calicivirus NTPase was found in membranous replication complexes" /protein_id="YP_009238494.1" mat_peptide 2069..2590 /gene="ORF1" /locus_tag="NoVGIV_gp1" /product="p22" /note="3A-L; located in the polyprotein between NTPase and VPg; second most variable region of the calicivirus polyprotein; the FCV ortholog was detected in membranous replication complexes" /protein_id="YP_009238495.1" mat_peptide 2591..2992 /gene="ORF1" /locus_tag="NoVGIV_gp1" /product="VPg" /note="For Southampton calicivirus, both N-terminal and C-terminal cleavage sites have been confirmed by direct sequencing. In caliciviruses, VPg can also exist in the form of precursor with the upstream protein which is thought to function as a membrane anchor" /protein_id="YP_009238496.1" mat_peptide 2993..3535 /gene="ORF1" /locus_tag="NoVGIV_gp1" /product="Pro" /note="Chymotrypsin-like cysteine proteinase; For Southampton calicivirus, both N-terminal and C-terminal cleavage sites have been confirmed by direct sequencing. The FCV proteinase (Pro) can exist in the form of a stable Pro-Pol precursor" /protein_id="YP_009238497.1" mat_peptide 3536..5065 /gene="ORF1" /locus_tag="NoVGIV_gp1" /product="RdRp" /note="The FCV polymerase (Pol) can exist in the form of a stable Pro-Pol precursor; RNA-dependent RNA polymerase" /protein_id="YP_009238498.1" gene 5049..6719 /gene="ORF2" /locus_tag="NoVGIV_gp2" /db_xref="GeneID:27042436" CDS 5049..6719 /gene="ORF2" /locus_tag="NoVGIV_gp2" /note="ORF2; major capsid protein" /codon_start=1 /product="VP1" /protein_id="YP_009237904.1" /db_xref="GeneID:27042436" /translation="MKMASSDAAPSTDGAGNLVPESQQEVLPLAPVAGAALAAPVVGQ TNIIDPWIKENFVQAPQGEFTVSPKNSPGEILVNLELGPKLNPYLDHLSRMYNSYAGG IDVMVVLAGNAFTAGKVLIAAIPPNFPVEGVSASQATQFPHVIIDVRTLDPVRLPLPD VRSTFFHYTNDTEPKMRLVIWLYTPLRTNGSGDDSFTVSGRILTRPSQDFEFAFLIPP TVETKTTPFSVPGFSVQEMSNSRWPAAISAMVVRGNEPQVVQFQNGRAHLDGMLLGTT PVSPNYIASYRGISTGNSRSASSEADERAVGSFDVWVRLQEPDGQPYDIFGKQPAPIG TPDFKAVIVGFAARPLTSGSYANEAYVNTTASDYAPATGNMRFTVRNGGTGHISANKY WEFKSFGVEGERHTDIQYQEYELPDYSGQVASNHNLAPPVAPRMPGESLLLFQSNMPV WDDGHGESTPKKIHCLLPQEFIGHFFDRQAPSLGDAALLRYVNQETNRVLFECKLYRD GYITVAASSGLLDFPLDGFFRFDSWVSSFYILSPVGSGQGRRGRVRFQ" gene 6719..7447 /gene="ORF3" /locus_tag="NoVGIV_gp3" /db_xref="GeneID:27042437" CDS 6719..7447 /gene="ORF3" /locus_tag="NoVGIV_gp3" /note="ORF3; minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="YP_009237905.1" /db_xref="GeneID:27042437" /translation="MASSIMAGIAGDVLGSVVGGLVGAGANAINQSVEFGYNQALQSN AFQHDKDMLALQVAATRQLQSDLINLREQVLRKGGFSDTDAARGAIGAPMSRLVDWNG TRLSAPGSMHTTSYSGRFVGTTRQQPHFTPPPQTNHVRIDDEVSSVSSLPTAVTSVPS SRTADWVHSQRQLSSWGSSASQHSQLEPFHPNALRVAWGSTPSSSSRASTVDGSVIDS WTPAFNLKHQPFFARFHPRGASNV" 3'UTR 7448..7527 ORIGIN 1 gtgaatgaag atggcgtcta acgacgctag tgttgccaac agcaacagca aaaccattgc 61 tgccaacaac accacgaccc ctaaacaagg gggcgtgttt gcaaacatga agattgggct 121 caagaaagtt cttgaaccca aatctgagac acccacggta agaccaaaag acgtgggtaa 181 accggggggc accagtccac cggatgaccc cccaggtgtc acgatcaagt acgatgctca 241 gagtgacacc attgaagggc tccctaacct gtccactgtt ccacaaccag aggcgcgcca 301 ggttaagtgt gttccaccca tggcggagag ggaggtcaag aatgcggcgg aaccacaaac 361 cggctccctg ctagaaatgt atgatgggtc attctatcat tatgccatct acattgagaa 421 tggcctagtc gctgggataa atcgcccttc taaggctctc acaaccgcca cagtcgacgt 481 tgaaccgatt gggttgtggt ggagagtggt ctacactcca ccattctcag tctccacgtc 541 ggccctctac catctacaag gtgagaaatt cccatataac gcctttgaca acaactgtta 601 taacttctgc tgtcaggtgt tggaactgga tgattgctgg atgcgcagga agttcgtcca 661 gcgaaccact ggtttctttg acccatacca aaggtggaac ccaaaaccct cacagtatgt 721 ggctgattca aagttggaga gagtagggga cgctcttctc actgcgctgg gggcactctt 781 ctccaagcca ataaagaaca taattgggaa gctcaaacct ttgaatttct tgaatttact 841 atcgtcctgt gattggacgt tccccagcat tgttgaaacc ataatcctga ttgcagagct 901 ctttgacgtc tattgggaac caccagacgt cacagggttc ttaatgccac tcctggatga 961 ctacgaattc caggggcctg aggatttggc tgcagaaata gtcccattga tcctaggggg 1021 tatagggatg gtagtgggtt tcaccgcaga gaaggcagga aagctgttgt cctccgctgc 1081 agcaacactg agggcgacaa gggagcttgg caattatggc ctagagatcg tgaaactagt 1141 gatgaagtgg tttttcccta agaaggagag tgacatgaat gcaatggtca gaaacataga 1201 ggatgctgta ctagatctgg aagcagttga gagcaaccat atcactcacc tactcaaaga 1261 taaggaaaac atggcagtct tccttcgcac cttggacctt gaggaagaaa aggccaggaa 1321 actatccact aaggctgctt cccccaacat aattgcatct gtcaatgcct tgctcgcccg 1381 catcgctgcc gtcaggtccc ttgcgtttaa agcgaaagag gagatgtgcg cccggcagcg 1441 gccagtggtg gttatgctgt caggtcgacc aggcattggc aagacacact atgccagaga 1501 gcttgcttct aggatctcca agctgctcag ttcagatggt cgcgttgggc tcgtgccaag 1561 aaatggagtt gaccattggg actcctatag gggggaacca gtggtcgttt gggacgacta 1621 tggcatggga aacatcatta aggatgccat gatgcttcaa gaattggctg acacctgccc 1681 ccttacactc aattgcgacc gtatagagaa taggggtaaa atgtttgaaa gcgatgtcat 1741 cgtcttgacc accaattcgc ccaacccaag cccgatggat tatgtcaaca tggaggccgt 1801 cgctagaagg gtggatttct tggtgtatgc tgagtccccg gatgttgaga aggcaaaaag 1861 ggactttcca ggcgatccca aagcctggaa gcctttcttc aaagatgatc actcccacct 1921 cgttctcaca ttagctccac aaggtgggtt tgacaagagt ggtaacaccc cccacggaaa 1981 aggtatgact agaaacatca caccaaatgg actagtcgcc agagcggttg cgttggctgt 2041 ggaacgtaag gatgagttcc agctccaggg cccagatcca atcacctaca actttgattc 2101 ctcacaggtg gctgcatttc gaaagcttgc agctgacaac aagtacggcc ttgctgaaac 2161 tctccgcgtg ggcaacaaac tgaggaatgt gacaactata gagggcttca agaaggccgt 2221 gggggatgtc agatttaaaa agtgcaggat catctggaaa ggcgtaactt acgaccttga 2281 gtcagatggt aagggatcag tcaccattga cagggtgcag tcacagatgg tacagacaac 2341 tggggagatt caccaggctg tcctgcgctt acgccaagct cgggtgcggt attacgtcat 2401 gactgctcag aatgtcacct acgggctcct tcaggccgcc ggcgcagcat tcgtccttaa 2461 caggatattc aggcgtgcag agaacccatt ctcacgccta gtcaaagtgg aggaggacaa 2521 ggacgaagat gcacgcatgg ctatcatccc caaaaaggta gagattgttg aatccaatct 2581 agaggaagaa gggaaaaaga aagggaagaa caagcaaggc agaggccgta agcacacagc 2641 tttctcctcc aaaggactga gtgacgagga gtacgaagag ttcaagcagc tcagagagga 2701 gaagggagga aagtactcaa tccaagaata cctcgaagac cgtgaccgtt tcgaggaaga 2761 ggtcgcgtat gcacaggcct gtggaggtga ctgtgatgac atcgaaatca gccgcatacg 2821 caactccatt ttccgcccaa gtaggaaaca gagaaaggag gagagagtta agcttggcct 2881 ggtcaccggt tctgagatca gaaaacggaa gcctgatgac ttccagccaa aagggaaact 2941 gtgggcagat gacgagagaa ccgttgatta caacgaaaag ctggactttg aagcacccgc 3001 ttccatctgg gcgcgtatag ttcagcttgg tacaggttgg ggcttttggg tctcacccaa 3061 tctcctcatc acatcaaccc atgtcatacc aaagggtgtt gaagagttat ttggggttcc 3121 aatcaagcaa gtacaaatac acaggtgtgg cgagttcacc agacttaggt tctcgaagat 3181 gatcaggcca gatgtgactg gtatgatact tgaagatggg gcacccgaag gtgtcgtttg 3241 tagcatactg gtcaagagac caacaggtga gtgcctgcca ctagcagtca ggatgggaac 3301 ccaagctacc atgaagatac aagggaaagt ggtctcgggc caactgggga tgttgctgac 3361 tggctccaat gcaaagaaca tggacctggg gaccacccct ggtgactgtg gatgccctta 3421 cgtgtacaaa cgtggtaacg actatgtggt tgtgggtgtg cacactgccg cgggcagagg 3481 cgggaataca gtcatctgcg cggtgcaaac aggtgatggt gaagccgtac tagaaggaaa 3541 cactgataac ggcacatact gcggcgcccc aatagtgtca aaaggtaatg caccccagct 3601 atcctcaaag acaaaattct ggaggagctc tgtcgagcct ctcccgcctg gcacgtttga 3661 gcccgcctac ctcgggggtc gcgaccccag agtcgacggt gggccctcac tttaccaggt 3721 gatgagggac caacttaaac atttcacagc tcctcgtggg agaccagtca aaccccacct 3781 cttgcaggct gcagtcaaga caatcgagaa cgtgctggaa cagaccattg accccccaac 3841 accatggaca tatgcccagg cttgccagtc gcttgacaag acaacgtcga gtggctggcc 3901 ccaccatgtg cagaaaaaca cccattggaa tggtgaagca tttacaggac ccttggccga 3961 ccaagccagc aaggccaatc taatgtatga acaagggaag tccatgaccc cccagtacac 4021 tgctgccctt aaggatgaac tagtgaaacc agacaaagtg tacaaaaagg tcaagaaaag 4081 gctgctgtgg ggtgcagatc tcggaaccat ggtccggtgc gccagagcat tcggcccgtt 4141 cactgacgca cttaagaagt gctgcaccca acttccagtc aaagttggac tcaacattaa 4201 tgaagaggga cccatcatct ttgagaaaca cgcccaatat gagctccact atgatgcaga 4261 ttattcgcgg tgggattcca cccagcaacg ggaggtcctc gccgccgcac ttggcatcat 4321 gacaaaattc actgctgagc cacagctggc ctccgttgtg gcagaagact tgatttcccc 4381 aagtatgctt gatgttggcg actatgtcgt ccaggtcaat gaagggctac cctctggtgt 4441 cccctgcacc tcacagttaa acagtattgc ccattggatc atcaccctta catccatggc 4501 tgaggccact ggcctggatc ctgacatcgt ccaggctaac agctacttct ccttctatgg 4561 tgatgatgaa attgtgtcaa cagacataaa attcaatcca gaggtcctca ccctgaaact 4621 taaagcaatt ggccttgtcc caacccgccc agacaagaca gaaggcccat tggtggtgtc 4681 aaacaaatta gaaggtctga cttttctgag gcgcaccata actagagaca aagtgggctt 4741 ctttggtcgg ttggataagg attccattct caggcaaatg tactggacca agggcccgaa 4801 ccatcaagac ccatctgaaa gcatgttacc ccaccagaat cgcgccacac aattgatggc 4861 cctgttgggc gagtcagcac tccatggtca aaacttctac aaaaagatta gtggcatggt 4921 aatcaaagaa gtgaagaatg gtgggcatga gttctatgtg ccaaagtttg agtccatgta 4981 caagtggatg cggttctcag acttgagcac ttgggagggg gatcgcgatc tcgctcccga 5041 ttttgtgaat gaagatggcg tcgagtgacg ctgctccatc tacggatggt gcgggcaacc 5101 tcgttccaga gagtcaacaa gaggtgttgc ccctcgcccc agttgcaggc gctgcgttag 5161 cggcacctgt ggtgggacaa acaaatataa ttgacccctg gattaaagaa aattttgttc 5221 aagcccccca gggtgagttt actgtctcac ctaaaaattc tcctggtgaa attttagtta 5281 atttggaatt gggacccaaa ctcaacccct atctagacca cctttcacgc atgtataatt 5341 catatgctgg tggtatagat gtcatggtgg tgttggcggg caacgccttc acagccggca 5401 aggttttaat agcagctatc cccccaaatt tcccagtgga aggagtgtcc gcttcacagg 5461 ccactcaatt cccccatgtg attatagatg ttaggacact tgaccctgtg cggctccccc 5521 tcccggatgt gcgatccacg ttcttccatt atactaatga tactgaacca aagatgaggt 5581 tagttatttg gctttacacc ccacttagaa ctaatggcag tggtgatgat tctttcactg 5641 tctctgggcg catactcaca aggccctccc aggactttga gtttgctttc cttatccccc 5701 caacagtgga aacaaagaca accccctttt cagtgccagg cttctcagtg caggaaatgt 5761 ccaactcaag gtggccagct gccatctctg caatggtcgt ccgtgggaat gagccccaag 5821 tcgttcagtt ccagaatggc agggcccatc tggatggtat gctgcttggt acgacacctg 5881 tgtcgcccaa ttacatagca tcctaccgag gcatttccac tggcaactct cgttctgctt 5941 cctctgaggc cgacgagagg gccgttggta gctttgatgt gtgggtccgc ttacaagaac 6001 ctgatggcca gccctatgac atctttggta agcagccagc cccaattggc acccctgatt 6061 tcaaggccgt gatagttggc tttgcagcca ggcccctcac atccggatcc tacgcaaatg 6121 aagcgtatgt taacaccaca gccagtgact acgccccagc cactggtaat atgcgcttca 6181 cagtcaggaa cggcgggacc gggcacatat ctgcaaacaa atactgggag ttcaaatcat 6241 ttggtgttga aggagaaagg cacactgaca tccagtacca ggagtatgag cttcccgatt 6301 attctggtca agttgcttcc aaccataatc tggccccccc tgtagcccca cgcatgcctg 6361 gtgagtcact attgcttttc caatcaaata tgcctgtgtg ggatgatggg catggagagt 6421 ccacacccaa gaagattcat tgcctcttgc cacaggagtt tattggccat ttctttgaca 6481 ggcaagcccc ctctctaggt gatgctgcac tacttaggta tgtcaaccag gagacaaata 6541 gagtgttgtt tgagtgtaaa ctttataggg atggctacat cacagttgca gcatcatcag 6601 gattattaga tttccccttg gatggcttct ttaggtttga ttcttgggtt agttcttttt 6661 acattttatc ccccgtggga agcggccaag gccgcagggg tagagtgagg tttcaataat 6721 ggcttctagc attatggcag gcatagcagg cgatgtgcta ggctcagttg tgggtggatt 6781 agttggagcc ggtgctaacg ccataaacca atctgttgaa tttgggtaca accaagcact 6841 gcaatctaat gctttccaac atgataaaga catgcttgcc ttacaggtgg ccgcgacccg 6901 ccagctacag tcggatttga tcaacttgcg cgagcaggtt cttcgcaagg gtggtttctc 6961 cgacactgat gcggcgcgtg gagccattgg tgcccccatg tcacgccttg tggattggaa 7021 cggcacaagg ttgtccgccc cgggttccat gcacacaaca tcatactcgg gccggtttgt 7081 tggcacaacc agacaacaac cccacttcac ccctcctccg caaactaatc atgttagaat 7141 tgatgatgaa gtttcttctg tctcttcctt gcccacagcg gtgacctcag tccctagttc 7201 taggacagct gattgggttc atagtcaaag acagctatcc tcctggggtt ctagtgcatc 7261 ccaacattca cagctggaac cctttcatcc aaacgctctg agagtggctt gggggtctac 7321 tccgagttcc tcctccagag cgtccactgt ggatggttca gtcattgatt catggacccc 7381 cgcttttaat ttgaagcatc agcctttctt tgctcgcttt cacccgaggg gtgcttctaa 7441 tgtttagtca acaactcact aatgagtagt tgtgagtttt tgtaatctgt gaaatgtaga 7501 ttctttaatt aattgaaatt ggcattt // LOCUS KC894731 7525 bp RNA linear VRL 25-AUG-2015 DEFINITION Norovirus Hu/GIV.1/CCDC GR1113-59/CHN/2011, complete genome. ACCESSION KC894731 VERSION KC894731.1 KEYWORDS . SOURCE Norovirus Hu/GIV.1/CCDC GR1113-59/CHN/2011 ORGANISM Norovirus Hu/GIV.1/CCDC GR1113-59/CHN/2011 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7525) AUTHORS Ao,Y.Y., Yu,J.M., Li,L.L., Jin,M. and Duan,Z.J. TITLE Detection of human norovirus GIV.1 in China: a case report JOURNAL J. Clin. Virol. 61 (2), 298-301 (2014) PUBMED 25151627 REFERENCE 2 (bases 1 to 7525) AUTHORS Duan,Z., Ao,Y., Yu,J. and Li,L. TITLE Direct Submission JOURNAL Submitted (11-APR-2013) Viral Diarrhea, Institute for Viral Disease Control and Prevention, 100 Ying-Xin Street, Xuan-Wu District, Beijing 100052, China COMMENT ##Assembly-Data-START## Assembly Method :: MEGA v. 3.1 Sequencing Technology :: 454; Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7525 /organism="Norovirus Hu/GIV.1/CCDC GR1113-59/CHN/2011" /mol_type="genomic RNA" /strain="Hu/GIV.1/CCDC GR1113-59/CHN/2011" /isolate="CCDC GR1113-59" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1338688" /country="China" /collection_date="20-Jul-2011" /collected_by="Tianli Li" /PCR_primers="fwd_seq: acgatgctcagagtgacacca, rev_seq: caagtatcataccagtcacatctg" /PCR_primers="fwd_seq: ctgtggaggtgactgtgatgacat, rev_seq: catgacatctatgccaccagca" /PCR_primers="fwd_seq: cattctcaggcaaatgtactggac, rev_seq: ctcacaactactcattagtgagt" /PCR_primers="fwd_seq: gcaaacatgaagattgggct, rev_seq: ttgaatcagccacatactgtgagg" /note="genotype: GIV" 5'UTR 1..4 CDS 5..5068 /note="ORF1" /codon_start=1 /product="non-structural polyprotein" /protein_id="AGN11429.1" /translation="MKMASNDASVANSNSKTIAANNTTTPKQGGVFANMKIGLKKVLE PKSETPTVRPKDVGKPGGTSPPDDPPGVTIKYDAQSDTIEGLPNLSTVPQPEARQVKC VPPMAEREVKNAAEPQTGSLLEMYDGSFYHYAIYIENGLVAGINRPSKALTTATVDVE PIGLWWRVVYTPPFSVSTSALYHLQGEKFPYNAFDNNCYNFCCQVLELDDCWMRRKFV QRTTGFFDPYQKWNPKPSQYVADSKLERVGDALLTALGALFSKPIKNIIGKLKPLNFL NLLSSCDWTFPSIVETIILIAELFDVYWEPPDVTGFLMPLLDDYEFQGPEDLAAEIVP LILGGIGMVVGFTAEKAGKLLSSAAATLRATRELGNYGLEIVKLVMKWFFPKKESDMN AMVRNIEDAVLDLEAVESNHITHLLKDKENMAVFLRTLDLEEEKARKLSTKAASPDII ASVNALLARIAAVRSLAFKAKEEMCARQRPVVVMLSGRPGIGKTHYARELASRISKLL SSDGRVGLVPRNGVDHWDSYRGEPVVVWDDYGMGNIIKDAMMLQELADTCPLTLNCDR IENKGKMFESDVIVLTTNSPNPSPMDYVNMEAVARRVDFLVYAESPDVEKAKRDFPGD PKAWKPFFKDDHSHLVLTLAPQGGFDKNGNTPHGKGMTRNITPNGLVARAVALAVERK DEFQLQGPDPITYNFDSSQVAAFRKLAADNKYGLAETLRVGNKLRNVTTIEGFKKAVG DVRFKKCRIIWKGVTYDLESDGKGSVTIDRVQSQMVQTTGEIHQAVLRLRQARVRYYV MTAQNVTYGLLQAAGAAFVLNRIFRRAENPFSRLVKVEEDKDEDARMAIIPKKVEIVE SNLEEEGKKKGKNKQGRGRKHTAFSSKGLSDEEYEEFKQLREEKGGKYSIQEYLEDRD RFEEEVAYAQACGGDCDDIEISRIRNSIFRPSRKQRKEERVKLGLVTGSEIRKRKPDD FQPKGKLWADDERTVDYNEKLDFEAPASIWARIVQLGTGWGFWVSPNLLITSTHVIPK GVEELFGVPIKQVQIHRCGEFTRLRFSKMIRPDVTGMILEDGAPEGVVCSILVKRPTG ECLPLAVRMGTQATMKIQGKVVSGQLGMLLTGSNAKNMDLGTTPGDCGCPYVYKRGND YVVVGVHTAAGRGGNTVICAVQTGDGEAVLEGNTDNGTYCGAPIVSKGNAPQLSSKTK FWRSSVEPLPPGTFEPAYLGGRDPRVDGGPSLYQVMRDQLKHFTAPRGRPVKPHLLQA AVKTIENVLEQTIDPPTPWTYAQACQSLDKTTSSGWPHHVQKNTHWNGEAFTGPLADQ ASKANLMYEQGKSMTPQYTAALKDELVKPDKVYKKVKKRLLWGADLGTMVRCARAFGP FTDALKKCCTQLPVKVGLNINEEGPIIFEKHAQYELHYDADYSRWDSTQQREVLAAAL GIMTKFTAEPQLASVVAEDLISPSMLDVGDYVVQVNEGLPSGVPCTSQLNSIAHWIIT LTSMAEATGLDPDIVQANSYFSFYGDDEIVSTDIKFNPEVLTLKLKAIGLVPTRPDKT EGPLVVSNKLEGLTFLRRTITRDKVGFFGRLDKDSILRQMYWTKGPNHQDPSESMLPH QNRATQLMALLGESALHGQNFYKKISGMVIKEVKNGGHEFYVPKFESMYKWMRFSDLS TWEGDRDLAPDFVNEDGVE" CDS 5049..6719 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AGN11430.1" /translation="MKMASSDAAPSTDGAGNLVPESQQEVLPLAPVAGAALAAPVVGQ TNIIDPWIKENFVQAPQGEFTVSPKNSPGEILVNLELGPKLNPYLDHLSRMYNSYAGG IDVMVVLAGNAFTAGKVLIAAIPPNFPVEVVSASQATQFPHVIIDVRTLDPVRLPLPD VRSTFFHYTNDTEPKMRLVIWLYTPLRTNGSGDDSFTVSGRILTRPSQDFEFAFLIPP TVETKTTPFSVPGFSVQEMSNSRWPAAISAMVVRGNEPQVVQFQNGRAHLDGMLLGTT PVSPNYIASYRGISTGNSRSASPEADERAVGSFDVWVRLQEPDGQPYDIFGKQPAPIG TPDFKAVIVGFAARPLTSGSYANEAYVNTTASNYAPATGNMRFTVRNGGTGHTSANKY WEFKSFGVEGERHTGIQYQEYELPDYSGQVASNHNLAPPVAPRMPGESLLLFQSNMPV WDDGHGESTPKKIHCLLPQEFIGHFFDKQAPSLGDAALLRYVNQETNRVLFECKLYRD GYITVAASSGLLDFPLDGFFRFDSWVSSFYILSPVGSGQGRRGRVRFQ" CDS 6719..7447 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="AGN11431.1" /translation="MASSIMAGIAGDVLGSVVGGLVGAGANAINQSVEFGYNQVLQSN AFQHDKDMLASQVAATRQLQSDLINLREQVLRKGGFSDTDAARGAIGAPMSRLVDWNG TRLSAPGSMHTTSYSGRFVGTTRQQPHFTPPPQANHVRIDDEASSVSSLPTAVTSVPS SRTADWVHSQRQLSSWGSSASQHSQLEPFHPNALRVAWGSTPSSSSRASTVDGSVIDS WTPAFNLKHQPFFARFHPRGASNV" 3'UTR 7448..7525 ORIGIN 1 gtgaatgaag atggcgtcta acgacgctag tgttgccaac agcaacagca aaactattgc 61 tgccaacaac accacgaccc ctaaacaagg gggcgtgttt gcaaacatga agattgggct 121 caagaaagtt cttgaaccca aatctgagac acccacggta agaccaaaag acgtgggtaa 181 accggggggc accagtccac cggatgaccc cccaggtgtc acgatcaagt acgatgctca 241 gagtgacacc attgaagggc tccctaacct gtctactgtt ccacaaccag aggcgcgcca 301 ggttaagtgt gttccaccca tggcggagag ggaggtcaag aatgcggcgg aaccacaaac 361 cggctccctg ctagaaatgt atgatggatc attctatcat tatgccatct acattgagaa 421 tggcctggtt gctgggataa accgcccttc taaagctctc acaaccgcca cagtcgacgt 481 tgaaccgatt gggttgtggt ggagagtggt ctacactcca ccattctcag tctccacgtc 541 ggccctctac catctacaag gtgagaaatt cccatataac gcctttgaca ataactgtta 601 taacttctgc tgtcaggtgc tggaactgga tgattgctgg atgcgcagga agttcgtcca 661 gcgaaccact ggtttctttg acccatacca aaaatggaac ccaaaaccct cacagtatgt 721 ggctgattca aagttggaga gagtggggga cgctctcctc actgcgctgg gggcactctt 781 ctccaagcca ataaagaaca taattgggaa gctcaaacct ttgaatttct tgaatttact 841 atcgtcctgt gattggacgt tccccagcat tgtcgaaacc ataattctga ttgcagagct 901 ctttgacgtc tattgggaac caccagacgt cacagggttc ttaatgccac tcctggatga 961 ctacgaattc caggggcctg aggatttggc tgcagaaata gtcccattga tcctaggggg 1021 tatagggatg gtagtgggtt tcaccgcaga gaaggcagga aagctgttgt cctccgctgc 1081 agcaacactg agggcgacaa gggagcttgg caattatggc ctagagattg tgaaactagt 1141 gatgaagtgg tttttcccta agaaggagag tgacatgaat gcaatggtca gaaacataga 1201 ggatgctgta ctagatctgg aagcggttga gagcaaccat atcactcacc tactcaaaga 1261 caaggaaaac atggcagtct tccttcgcac cttggacctt gaggaagaaa aggccaggaa 1321 actatccact aaggctgctt cccccgacat aattgcatct gtcaacgcct tgctcgcccg 1381 cattgctgcc gtcaggtccc tcgcgtttaa agcgaaagag gagatgtgcg cccggcagcg 1441 gccagtggtg gttatgctgt caggtcgacc aggcattggc aagacacact atgccagaga 1501 gcttgcttct aggatctcca agctgctcag ttcagatggt cgcgttgggc tcgtgccaag 1561 aaatggagtt gaccattggg actcctatag gggggaacca gtggtcgttt gggacgacta 1621 tggcatggga aacatcatta aggatgccat gatgcttcaa gaattggctg acacctgccc 1681 ccttacactc aattgtgacc gtatagagaa taagggcaaa atgtttgaaa gcgatgtcat 1741 cgtcttgacc accaattcgc ccaacccaag cccgatggat tatgtcaaca tggaggccgt 1801 cgctagaagg gtggatttct tggtgtatgc tgagtccccg gatgttgaga aggcaaaaag 1861 ggactttcca ggcgatccca aagcctggaa acctttcttc aaggatgacc actcccacct 1921 cgttctcaca ttagctccac aaggtgggtt tgacaagaat ggtaacaccc cccacggaaa 1981 aggcatgact agaaacatca caccaaatgg actagtcgcc agagcggttg cgttggctgt 2041 ggaacgtaag gatgagttcc aactccaggg cccagaccca atcacctaca actttgattc 2101 ctcacaggtg gctgcatttc gaaagcttgc agctgacaac aagtacggcc ttgctgaaac 2161 tctccgcgtg ggcaacaaac tgaggaatgt gacaactata gagggcttca agaaggccgt 2221 gggggatgtc agatttaaaa agtgcaggat catctggaaa ggtgtaactt acgaccttga 2281 gtcagatggt aagggatcag tcaccattga cagggtgcag tcacagatgg tacagacaac 2341 tggggagatt caccaggctg tcctgcgctt acgccaagct cgggtgcggt actacgttat 2401 gactgctcag aatgtcacct acgggctcct tcaggccgcc ggcgcagcat tcgtccttaa 2461 caggatattc aggcgtgcag agaacccatt ctcacgccta gtcaaagtgg aggaggacaa 2521 ggacgaagat gcacgcatgg ctatcatccc caaaaaggta gagattgttg aatctaacct 2581 agaggaagaa gggaaaaaga aagggaagaa caagcaaggc agaggccgta agcacacagc 2641 tttctcctcc aaaggactga gtgacgagga gtacgaagag ttcaagcagc tcagagagga 2701 aaagggagga aagtactcaa tccaagaata cctcgaagac cgtgaccgct tcgaggaaga 2761 ggtcgcgtat gcacaggcct gtggaggtga ctgtgatgac atcgaaatca gccgcatacg 2821 caactccatt ttccgcccaa gtaggaaaca gagaaaggag gagagagtca agcttggtct 2881 ggttaccggt tctgagatca gaaaacggaa gcctgatgac ttccagccaa aagggaaact 2941 gtgggcagat gacgagagaa ccgttgatta caacgaaaag ctggactttg aagcacccgc 3001 ttccatctgg gcgcgcatag ttcagcttgg tacaggttgg ggcttttggg tctcacccaa 3061 tctcctcatc acatcaaccc atgtcatacc aaagggtgtt gaagagttat ttggggttcc 3121 aatcaagcaa gtgcaaatac acaggtgtgg tgagttcacc agacttaggt tctcgaagat 3181 gatcaggcca gatgtgactg gtatgatact tgaagatggg gcacccgaag gtgtcgtttg 3241 tagcatactg gtcaagagac caacaggtga gtgcctgcca ctagcagtca ggatgggaac 3301 ccaagctacc atgaagatac aagggaaagt ggtctcgggc caactgggga tgttgctgac 3361 tggctctaat gcaaagaaca tggacctggg gaccacccct ggtgactgtg gatgccctta 3421 cgtgtacaaa cgtggtaacg actatgtggt tgtgggtgtg cacactgccg cgggtagagg 3481 cgggaataca gtcatctgcg cagtgcaaac aggtgatggt gaagccgtac tagaaggaaa 3541 cactgataac ggcacgtact gcggcgcccc aatagtgtca aaaggtaatg caccccagct 3601 atcctcaaag acaaaattct ggaggagctc tgtcgagcct ctcccgcctg gcacgtttga 3661 gcccgcctac ctcgggggtc gcgaccccag agtcgacggt gggccctcac tttaccaggt 3721 gatgagggac caacttaaac atttcacagc tcctcgtggg agaccagtca aaccccacct 3781 cttgcaggcc gcagtcaaga caatcgagaa cgtgctggaa cagaccattg atcccccaac 3841 accatggaca tatgcacagg cttgccagtc gcttgacaag acaacgtcga gtggctggcc 3901 ccaccatgtg cagaaaaaca cccattggaa tggtgaagca tttacaggac ccttggctga 3961 ccaagccagc aaggccaatt taatgtatga acaagggaag tccatgaccc cccagtacac 4021 tgctgccctt aaggatgaac tagtgaaacc agacaaggtg tacaaaaagg tcaagaaaag 4081 gctgctgtgg ggtgcagatc tcggaaccat ggtccggtgc gccagagcat tcggcccgtt 4141 cactgacgca cttaagaagt gctgcaccca acttccagtc aaagttggac tcaacattaa 4201 tgaagaggga cccatcatct ttgagaaaca cgcccaatat gagctccact atgatgcgga 4261 ttattcgcgg tgggattcca cccagcaacg ggaggtcctt gccgccgcac ttggcatcat 4321 gacaaaattc actgctgagc cacagctggc ctccgttgtg gcagaagact tgatttcccc 4381 aagtatgctt gatgttggcg actacgtcgt ccaggtcaat gaagggctac cctctggtgt 4441 cccctgcacc tcacagttaa acagtattgc ccattggatc atcaccctca catccatggc 4501 tgaggccact ggcctggatc ctgacatcgt ccaggctaac agctacttct ccttctatgg 4561 tgatgatgaa attgtgtcaa cagacataaa attcaatcca gaggtcctca ccctgaaact 4621 taaagcaatt ggccttgtcc caacccgccc agacaagaca gaaggcccat tggtggtgtc 4681 aaacaaatta gaaggtctga cttttctgag gcgcaccata actagagaca aagtgggctt 4741 ctttggtcgg ttggataagg attccattct caggcaaatg tactggacca agggcccgaa 4801 ccatcaagac ccatctgaaa gcatgttacc ccaccagaat cgcgccacac aattgatggc 4861 cctgttgggc gagtcagcac tccatggtca aaacttctac aaaaagatta gtggcatggt 4921 aatcaaagaa gtgaagaatg gtgggcatga gttctatgtg ccaaagtttg agtccatgta 4981 caagtggatg cggttctcag acttgagcac ttgggagggg gatcgcgatc tcgctcccga 5041 ttttgtgaat gaagatggcg tcgagtgacg ctgctccatc tacggatggt gcgggcaacc 5101 tcgttccaga gagtcaacaa gaggtgttgc ccctcgcccc agttgcaggc gctgcgttag 5161 cggcacctgt ggtggggcaa acaaatataa ttgacccctg gattaaagaa aattttgtcc 5221 aagcccccca gggtgagttt actgtctcac ctaaaaattc tcctggtgaa attttagtca 5281 atttggaatt gggacccaaa ctcaacccct atctagacca cctttcacgc atgtacaatt 5341 catatgctgg tggcatagat gtcatggtgg tgttggcggg caacgccttc acagccggca 5401 aggttttaat agcagctatc cccccaaatt tcccagtgga agtggtgtcc gcttcacaag 5461 ccactcaatt cccccatgtg attatagatg ttaggacact tgaccctgtg cggctccccc 5521 tcccggatgt gcgatccacg ttcttccatt acactaatga tactgaacca aagatgaggt 5581 tagtcatttg gctttacacc ccacttagaa ctaatggcag tggtgatgat tctttcaccg 5641 tctctgggcg catactcaca aggccctccc aggactttga gtttgctttc cttatccccc 5701 caacagtgga aacaaagaca accccctttt cagtgccagg cttctcggtg caggaaatgt 5761 ccaactcaag gtggccagct gccatctctg caatggtcgt ccgtgggaat gagccccaag 5821 tcgttcagtt ccagaatggt agggcccact tggatggtat gttgcttggt acgacacctg 5881 tgtcgcccaa ttacatagca tcctaccgag gcatctccac tggcaactct cgttctgctt 5941 cccctgaggc cgacgagagg gccgttggta gctttgatgt gtgggtccgc ctacaagaac 6001 ctgatggcca gccctatgac atctttggta agcagccagc cccaattggc acccctgatt 6061 tcaaggccgt gatagttggc tttgcagcta ggcccctcac atccgggtcc tacgcaaatg 6121 aagcgtatgt taacaccaca gccagtaact acgccccagc cactggtaat atgcgcttca 6181 cagtcaggaa cggcgggacc gggcacacat ctgcaaacaa atattgggag ttcaaatcat 6241 ttggtgttga aggagaaagg cacactggca tccagtacca ggagtatgag cttcccgatt 6301 attctggtca agttgcttcc aaccataatc tggccccccc tgtagcccca cgcatgcctg 6361 gtgagtcact attgcttttc caatcaaata tgcctgtgtg ggacgatggg catggagagt 6421 ccacacccaa gaagattcat tgcctattgc cacaggagtt tattggccat ttctttgaca 6481 agcaagcccc ctctctaggt gatgctgcac tacttaggta tgtcaaccag gagacaaata 6541 gagtgttgtt tgagtgtaaa ctttataggg atggctacat cacagttgct gcatcatcag 6601 gattattaga tttccccttg gatggcttct ttaggtttga ttcttgggtt agttctttct 6661 acattttatc ccccgtggga agcggccaag gccgcagggg tagagtgagg tttcaataat 6721 ggcttctagc attatggcag gtatagcagg cgatgtgcta ggctcagttg tgggtggatt 6781 agttggagcc ggtgctaacg ccataaacca atctgttgaa tttgggtaca accaagtact 6841 gcaatctaat gctttccaac atgataaaga tatgcttgcc tcacaggtgg ccgcaacccg 6901 tcagctacag tcggatttga tcaacttgcg cgagcaggtt cttcgcaagg gtggtttctc 6961 cgacactgat gcggcgcgtg gagccattgg tgcccccatg tcacgtcttg tggattggaa 7021 cggcacaagg ttgtccgccc cgggttccat gcacacaaca tcatactcgg gtcggtttgt 7081 tggcacaacc agacaacaac cccacttcac ccctcctcca caagctaatc atgttagaat 7141 tgatgatgaa gcttcttctg tctcttcctt gcccacagcg gtgacctcag ttcctagttc 7201 taggacagct gattgggttc atagtcaaag gcagctatcc tcctggggtt ctagtgcatc 7261 ccaacattca cagttggaac cctttcatcc aaacgctctg agagtggctt gggggtctac 7321 tccgagttcc tcctccagag cgtccactgt ggatggttca gtcattgatt catggacccc 7381 cgcttttaat ttgaagcatc agcctttctt tgctcgcttt cacccgaggg gtgcttctaa 7441 tgtttagtca acaactcact aatgagtagt tgtgagtttt gtaatctgtg aaatgtagat 7501 tctttaatta attgaattgg cattt // LOCUS FM865412 2966 bp RNA linear VRL 26-JUL-2016 DEFINITION Norovirus Hu/GIV.1/Italy/980/2007/ITA partial RNA polymerase (ORF1), capsid protein (0RF2) and partial minor structural protein (ORF3), genomic RNA. ACCESSION FM865412 VERSION FM865412.1 KEYWORDS . SOURCE Norovirus Hu/GIV.1/Italy/980/2007/ITA ORGANISM Norovirus Hu/GIV.1/Italy/980/2007/ITA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS La Rosa,G., Pourshaban,M., Iaconelli,M. and Muscillo,M. TITLE Detection of genogroup IV noroviruses in environmental and clinical samples and partial sequencing through rapid amplification of cDNA ends JOURNAL Arch. Virol. 153 (11), 2077-2083 (2008) PUBMED 18985275 REFERENCE 2 (bases 1 to 2966) AUTHORS La Rosa,G. TITLE Direct Submission JOURNAL Submitted (26-OCT-2008) La Rosa G., Environment and Primary Prevention, Istituto Superiore Sanita', Viale Regina Elena 299, Rome, 00161, ITALY FEATURES Location/Qualifiers source 1..2966 /organism="Norovirus Hu/GIV.1/Italy/980/2007/ITA" /mol_type="genomic RNA" /strain="Italy/980/2008" /isolation_source="sewage sample" /db_xref="taxon:572388" /country="Italy" /collection_date="23-May-2007" /note="genogroup: GIV/1" CDS <1..685 /function="nonstructural protein" /note="ORF1" /codon_start=2 /product="RNA polymerase" /protein_id="CAR95869.1" /db_xref="GOA:B6VPX9" /db_xref="InterPro:IPR001205" /db_xref="InterPro:IPR004004" /db_xref="InterPro:IPR007094" /db_xref="UniProtKB/TrEMBL:B6VPX9" /translation="LISPSMLDVGDYVVQVNEGLPSGVPCTSQLNSIAHWIITLTSMA EATGLDPDIVQANSYFSFYGDDEIVSTDIKFNPEVLTLKLKAIGLVPTRPDKTEGPLV EGLTFLRRTITRDKVVFFGRLDKDSILRQMYWTKGPNHQDPSESMLPHQNRATQLMAL LGESALHGQNFYKKISGMVIKEVKNGGHEFYVPKFESMYKWMRFSDLSTWEGDRDLAP DFVNEDGVE" CDS 666..2336 /function="major structural protein" /note="ORF2" /codon_start=1 /product="capsid protein" /protein_id="CAR95870.1" /db_xref="InterPro:IPR004005" /db_xref="InterPro:IPR013643" /db_xref="UniProtKB/TrEMBL:B6VPY0" /translation="MKMASSDAAPSTDGAGNLVPESQQEVLPLAPVAGAALAAPVVGQ TNIIDPWIKENFVQAPQGEFTVSPKNSPGEILVNLELGPKLNPYLDHLSRMYNSYAGG IDVMVVLAGNAFTAGKVLIAAIPPNFPVEGVSASQATQFPHVIIDVRTLDPVRLPLPD VRSTFFHYTNDTEPKMRLVIWLYTPLRTNGSGDDSFTVSGRILTRPSQDFEFAFLIPP TVETKTTPFSVPGFSVQEMSNSRWPAAISAMVVRGNEPQVVQFQNGRAHLDGMLLGTT PVSPNYIASYRGISTGNSRSASSEADERAVGSFDVWVRLQEPDGQPYDIFGKQPAPIG TPDFKAVIVGFAARPLTSGSYANEAYVNTTASDYAPATGNMRFTVRNGGTGHISANKY WEFKSFGVEGERHTNIQYQEYELPDYSGQVASNHNLAPPVAPRMPGESLLLFQSNMPV WDDGHGESTPKKIHCLLPQEFIGHFFDKQAPSLGDAALLRYVNQETNRVLFECKLYRD GYITVAASSGLLDFPLDGFFRFDSWVSSFYILSPVGSGQGRRGRVRFQ" CDS 2336..>2965 /note="ORF3" /codon_start=1 /product="minor structural protein" /protein_id="CAR95871.1" /db_xref="InterPro:IPR004278" /db_xref="UniProtKB/TrEMBL:B6VPY1" /translation="MASSIMAGIAGGVLGSVVGGLVGAGANAINQSVEFGYNQALQSN AFQHDKDMLALQVAATRQLQSDLINLREQVLRKGGFSDTDAARGAIGAPMSRLVDWNG TRLSAPGSMHTTSYSGRFVGTTRQQPHFTPPPQTNYVRVDDEVSSVSSLPTTVTSVPS SRTVDWVHSQRQLSSWGSSASQHSQLEPFHPNALRVAWGSTPSSSSRAST" ORIGIN 1 cttgatttcc ccaagtatgc ttgatgttgg cgactatgtc gtccaggtca atgaagggtt 61 accctctggt gtcccctgca cctcacaatt aaacagtatt gcccattgga tcatcactct 121 cacatccatg gctgaggcca ctggcctgga ccctgacatc gtccaggcta acagctactt 181 ctccttctat ggtgatgatg aaattgtgtc aacagacata aaattcaatc cagaggtcct 241 taccctgaaa cttaaagcaa ttggccttgt tccaacccgc ccagacaaga cagaaggccc 301 actggtggaa gggctgactt tcctgaggcg caccataact agagacaaag tggtcttctt 361 tggtcggttg gataaggatt ccattctcag gcaaatgtac tggaccaagg gcccgaacca 421 tcaagaccca tctgaaagca tgttacctca ccagaatcgc gccacacaat tgatggccct 481 gttgggcgag tcagcactcc atggtcaaaa cttctacaaa aagattagtg gcatggtaat 541 caaagaagtg aagaatggtg ggcatgagtt ctatgtgcca aagtttgagt ccatgtataa 601 gtggatgcgg ttctcagact tgagcacttg ggagggggat cgcgatctcg ctcccgattt 661 tgtgaatgaa gatggcgtcg agtgacgctg ctccatctac ggatggtgcg ggcaacctcg 721 ttccagagag tcaacaagag gtgttgcccc tcgccccagt tgcaggcgct gcgttagcgg 781 cacctgtggt ggggcaaaca aatataattg acccctggat taaagaaaat tttgttcaag 841 ccccccaggg tgagtttact gtctcaccta aaaattctcc tggtgaaatt ttagttaatt 901 tggaattggg acccaaactc aacccctatc tggaccacct ttcgcgcatg tacaactcat 961 atgctggtgg catagatgtc atggtggtgt tggcgggcaa cgccttcaca gccggcaagg 1021 ttttaatagc agctatcccc ccaaatttcc cagtggaagg agtgtccgct tcacaggcca 1081 ctcaatttcc ccatgtgatt atagatgtta ggacacttga ccctgtgcgg ctccccctcc 1141 cggatgtgcg atccacattc ttccactaca ctaatgatac tgaaccaaaa atgaggttag 1201 ttatttggct ttacacccca ctcagaacta atggcagtgg tgatgattct ttcaccgtct 1261 ctgggcgcat actcacaagg ccctcccagg actttgaatt cgctttcctt atccccccaa 1321 cagtggaaac aaagacaacc cccttctcag tgccaggctt ctcggtgcag gaaatgtcca 1381 actcaaggtg gccagctgcc atctctgcaa tggtcgtccg tgggaatgaa ccccaagttg 1441 ttcagttcca gaacggcagg gcccatctgg atggtatgct gcttggtacg acacctgtgt 1501 cgcccaatta catagcatcc taccgaggca tttccactgg caactctcgt tctgcttcct 1561 ctgaggctga cgagagggct gttggtagct ttgatgtgtg ggtccgctta caagaacctg 1621 atggccagcc ctatgacatc tttggtaagc agccagcccc aattggcacc cctgatttca 1681 aggctgtgat agttggcttt gcagctaggc ccctcacatc cgggtcctat gcaaatgaag 1741 cgtatgttaa caccacagcc agtgactacg ccccagccac tggtaatatg cgcttcacag 1801 tcaggaacgg tgggaccggg cacatatctg caaacaaata ctgggagttc aaatcatttg 1861 gtgttgaagg agaaaggcac actaacatcc agtaccagga gtatgagctt cccgattatt 1921 ctggccaagt tgcttccaac cataatctgg ccccccctgt agccccacgc atgcctggtg 1981 agtcattatt gcttttccaa tcaaatatgc ctgtgtggga tgatgggcat ggagagtcca 2041 cacccaagaa gattcattgc ctattgccac aggagtttat tggccatttc tttgataaac 2101 aagccccctc cctaggtgat gctgcactac ttaggtatgt caaccaggag acaaatagag 2161 tgttgtttga gtgtaaactt tatagggatg gttacatcac agtcgctgca tcatcaggat 2221 tattagattt ccctttggat ggattcttta ggtttgattc ttgggttagt tctttttaca 2281 ttttatcccc cgtgggaagc ggccaaggcc gcaggggtag agtgaggttt caataatggc 2341 ttctagcatt atggcaggta tagcaggcgg tgtgctgggc tcagttgtgg gtggactagt 2401 tggagccggt gctaacgcca taaaccaatc tgttgaattt gggtacaacc aagcactgca 2461 atctaatgct ttccaacatg ataaagatat gcttgcctta caggtggccg cgacccgtca 2521 gctacagtcg gatttgatca acttgcgcga gcaggttctt cgcaagggtg gtttctccga 2581 cactgacgcg gcgcgtggag ccattggtgc ccccatgtca cgccttgtgg attggaacgg 2641 cacaaggttg tccgccccgg gttccatgca cacaacatca tactcgggcc ggtttgttgg 2701 cacaaccaga caacaacccc acttcactcc tcccccacaa actaattatg ttagagttga 2761 tgatgaagtt tcttctgtct cttccttgcc cacaacggtg acctcagttc ctagttctag 2821 gacagttgat tgggtccata gtcaaaggca gctatcctcc tggggttcta gtgcatccca 2881 acactcacag ctggaaccct ttcatccaaa cgctctgaga gtggcttggg ggtctactcc 2941 gagttcctcc tccagagcgt ccactt //